Experiment set2IT093 for Sphingomonas koreensis DSMZ 15582

Compare to:

LB with Tetracycline hydrochloride 0.001 mg/ml

200 most important genes:

  gene name fitness t score description  
Ga0059261_3519 -2.5 -18.0 The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family compare
Ga0059261_0171 -2.5 -2.6 Thiol-disulfide isomerase and thioredoxins compare
Ga0059261_0197 -2.3 -1.9 hypothetical protein compare
Ga0059261_2490 -2.2 -6.5 Small protein A (tmRNA-binding) compare
Ga0059261_2707 -2.1 -7.5 fructose-1,6-bisphosphatase, class II compare
Ga0059261_3160 -2.0 -4.5 TolQ protein compare
Ga0059261_0349 -2.0 -5.3 MarR family compare
Ga0059261_1382 -1.9 -7.7 periplasmic serine protease, Do/DeqQ family compare
Ga0059261_3518 -1.9 -12.1 RND family efflux transporter, MFP subunit compare
Ga0059261_3488 -1.8 -2.1 Histidine kinase/HAMP domain compare
Ga0059261_3159 -1.8 -5.2 TolR protein compare
Ga0059261_3211 -1.7 -9.4 hypothetical protein compare
Ga0059261_1830 -1.7 -2.6 hypothetical protein compare
Ga0059261_4188 -1.6 -6.6 pyridoxal-dependent decarboxylase, exosortase A system-associated compare
Ga0059261_2005 -1.5 -5.4 protoheme IX farnesyltransferase compare
Ga0059261_3520 -1.5 -9.1 efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family compare
Ga0059261_3156 -1.5 -5.8 peptidoglycan-associated lipoprotein compare
Ga0059261_3157 -1.4 -9.9 tol-pal system beta propeller repeat protein TolB compare
Ga0059261_4186 -1.4 -2.1 Phosphopantetheine attachment site compare
Ga0059261_4224 -1.4 -2.6 hypothetical protein compare
Ga0059261_0255 -1.3 -3.2 SurA N-terminal domain/PPIC-type PPIASE domain compare
Ga0059261_2714 -1.3 -8.4 drug resistance transporter, Bcr/CflA subfamily conserved
Ga0059261_3502 -1.3 -3.2 Fatty acid desaturase compare
Ga0059261_0170 -1.3 -3.8 Uncharacterized protein involved in biosynthesis of c-type cytochromes compare
Ga0059261_2700 -1.2 -8.7 Putative Zn-dependent protease, contains TPR repeats compare
Ga0059261_0175 -1.2 -6.3 heme exporter protein CcmC compare
Ga0059261_0037 -1.2 -6.8 hypothetical protein compare
Ga0059261_2295 -1.2 -2.8 DUF218 domain compare
Ga0059261_0613 -1.2 -3.5 FecR family protein compare
Ga0059261_4187 -1.2 -7.3 acyl-CoA ligase (AMP-forming), exosortase A-associated compare
Ga0059261_0172 -1.2 -6.4 Cytochrome c biogenesis factor compare
Ga0059261_1911 -1.2 -1.9 Thioredoxin-like proteins and domains compare
Ga0059261_3191 -1.1 -5.4 Glycosyltransferases involved in cell wall biogenesis compare
Ga0059261_2181 -1.1 -8.0 penicillin-binding protein, 1A family compare
Ga0059261_1292 -1.0 -1.8 hypothetical protein compare
Ga0059261_3671 -1.0 -1.7 Citrate lyase beta subunit compare
Ga0059261_2417 -1.0 -3.0 phytoene desaturase compare
Ga0059261_1369 -1.0 -6.4 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Ga0059261_0069 -1.0 -4.2 tRNA dimethylallyltransferase compare
Ga0059261_2314 -1.0 -3.3 Protein-disulfide isomerase compare
Ga0059261_2189 -1.0 -5.4 uncharacterized domain 1 compare
Ga0059261_3615 -1.0 -1.3 hypothetical protein compare
Ga0059261_1600 -1.0 -2.3 Domain of unknown function (DUF4167) compare
Ga0059261_0627 -0.9 -1.3 cobalamin-5'-phosphate synthase (EC 2.7.8.26) compare
Ga0059261_2266 -0.9 -4.8 Uncharacterized protein conserved in bacteria compare
Ga0059261_3695 -0.9 -5.5 Predicted metal-dependent hydrolase with the TIM-barrel fold compare
Ga0059261_0136 -0.9 -3.2 Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation compare
Ga0059261_3359 -0.9 -1.7 Zn-dependent hydrolases, including glyoxylases compare
Ga0059261_1869 -0.9 -3.6 ABC-type transport system involved in resistance to organic solvents, periplasmic component compare
Ga0059261_2547 -0.9 -1.4 tRNA compare
Ga0059261_1386 -0.9 -4.4 7-cyano-7-deazaguanine reductase compare
Ga0059261_3207 -0.8 -3.8 Disulfide bond chaperones of the HSP33 family compare
Ga0059261_3490 -0.8 -3.7 Response regulator receiver domain/Sigma-70, region 4 compare
Ga0059261_2213 -0.8 -3.6 Domain of unknown function (DUF3576) compare
Ga0059261_1871 -0.8 -5.1 ABC transport permease subunit compare
Ga0059261_1370 -0.8 -3.5 Signal transduction histidine kinase compare
Ga0059261_1612 -0.8 -1.4 hypothetical protein compare
Ga0059261_2350 -0.8 -2.3 hypothetical protein compare
Ga0059261_3255 -0.8 -4.5 hypothetical protein compare
Ga0059261_4209 -0.7 -6.3 Transglycosylase SLT domain compare
Ga0059261_0827 -0.7 -1.6 hypothetical protein compare
Ga0059261_1312 -0.7 -2.9 amino acid/peptide transporter (Peptide:H+ symporter), bacterial compare
Ga0059261_0664 -0.7 -1.5 pseudouridine synthase, RluA family compare
Ga0059261_2754 -0.7 -5.8 ABC-type branched-chain amino acid transport systems, periplasmic component compare
Ga0059261_1563 -0.7 -1.5 cytochrome bo3 quinol oxidase subunit 4 (EC 1.10.3.-) compare
Ga0059261_0038 -0.7 -2.0 Transcriptional regulators compare
Ga0059261_0204 -0.7 -2.7 protein RecA compare
Ga0059261_2034 -0.7 -4.8 Uncharacterized protein conserved in bacteria compare
Ga0059261_3430 -0.7 -2.0 NADH:ubiquinone oxidoreductase 17.2 kD subunit compare
Ga0059261_0757 -0.7 -2.1 Predicted transcriptional regulators compare
Ga0059261_0227 -0.7 -2.4 hypothetical protein compare
Ga0059261_0889 -0.7 -1.6 Cold shock proteins compare
Ga0059261_2663 -0.7 -1.0 Domain of unknown function (DUF718) compare
Ga0059261_1408 -0.7 -1.5 Domain of unknown function (DUF4168) compare
Ga0059261_1021 -0.7 -2.1 hypothetical protein compare
Ga0059261_4120 -0.7 -1.2 Stress responsive A/B Barrel Domain compare
Ga0059261_1768 -0.7 -1.1 Sigma-70 region 2 compare
Ga0059261_0290 -0.7 -2.7 3-dehydroquinate dehydratase (EC 4.2.1.10) compare
Ga0059261_0354 -0.7 -2.4 6-phosphogluconate dehydratase (EC 4.2.1.12) compare
Ga0059261_4204 -0.6 -2.3 transcriptional regulator, TetR family compare
Ga0059261_1878 -0.6 -3.3 RND family efflux transporter, MFP subunit compare
Ga0059261_2243 -0.6 -1.7 Membrane protein involved in the export of O-antigen and teichoic acid compare
Ga0059261_3748 -0.6 -2.1 ribosomal protein L15, bacterial/organelle compare
Ga0059261_1870 -0.6 -3.0 ABC-type transport system involved in resistance to organic solvents, ATPase component compare
Ga0059261_0626 -0.6 -1.7 Fructose-2,6-bisphosphatase compare
Ga0059261_2498 -0.6 -2.2 hypothetical protein compare
Ga0059261_0141 -0.6 -2.2 transcriptional regulator, LysR family compare
Ga0059261_2697 -0.6 -5.3 Membrane carboxypeptidase/penicillin-binding protein compare
Ga0059261_0638 -0.6 -4.9 type I secretion outer membrane protein, TolC family compare
Ga0059261_2120 -0.6 -2.3 hypothetical protein compare
Ga0059261_0725 -0.6 -1.1 Fructose-1,6-bisphosphate aldolase compare
Ga0059261_2448 -0.6 -1.0 DNA protecting protein DprA compare
Ga0059261_2247 -0.6 -4.3 Beta-lactamase class A compare
Ga0059261_0964 -0.6 -2.1 Superfamily II DNA and RNA helicases compare
Ga0059261_0214 -0.6 -4.7 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) compare
Ga0059261_3995 -0.6 -3.3 succinylarginine dihydrolase (EC 3.5.3.23) compare
Ga0059261_2742 -0.6 -1.8 non-canonical purine NTP pyrophosphatase, RdgB/HAM1 family compare
Ga0059261_1868 -0.5 -1.5 ABC-type uncharacterized transport system, auxiliary component compare
Ga0059261_1287 -0.5 -3.6 poly(R)-hydroxyalkanoic acid synthase, class I compare
Ga0059261_1146 -0.5 -2.0 Flagellar basal body L-ring protein compare
Ga0059261_3190 -0.5 -4.2 3-isopropylmalate dehydrogenase compare
Ga0059261_1912 -0.5 -1.9 Nitroreductase compare
Ga0059261_2021 -0.5 -4.3 Protein of unknown function (DUF2029) compare
Ga0059261_0159 -0.5 -3.2 Transcriptional regulator compare
Ga0059261_1564 -0.5 -2.1 cytochrome bo3 quinol oxidase subunit 3 (EC 1.10.3.-) compare
Ga0059261_2009 -0.5 -4.0 cytochrome c oxidase, subunit II compare
Ga0059261_1772 -0.5 -1.6 MobA/MobL family compare
Ga0059261_2179 -0.5 -3.8 Phospholipid N-methyltransferase compare
Ga0059261_3472 -0.5 -3.0 Sporulation related domain compare
Ga0059261_1909 -0.5 -3.0 MAF protein compare
Ga0059261_1008 -0.5 -1.9 Geranylgeranyl pyrophosphate synthase compare
Ga0059261_0089 -0.5 -2.3 trigger factor compare
Ga0059261_0473 -0.5 -2.4 Predicted Fe-S protein compare
Ga0059261_1443 -0.5 -3.5 Hemolysins and related proteins containing CBS domains compare
Ga0059261_2701 -0.5 -3.7 Protein-disulfide isomerase compare
Ga0059261_0622 -0.5 -3.0 ABC-type Fe3+-hydroxamate transport system, periplasmic component compare
Ga0059261_0834 -0.5 -1.9 hypothetical protein compare
Ga0059261_0126 -0.5 -3.5 hydrolase, TatD family compare
Ga0059261_2481 -0.5 -2.5 Ppx/GppA phosphatase family compare
Ga0059261_2013 -0.5 -3.9 signal peptidase I, bacterial type compare
Ga0059261_1026 -0.5 -1.4 DNA repair protein RecN compare
Ga0059261_2735 -0.5 -1.3 Glyoxalase-like domain compare
Ga0059261_0856 -0.5 -2.3 Uncharacterized conserved protein compare
Ga0059261_0321 -0.5 -0.8 hypothetical protein compare
Ga0059261_1311 -0.5 -1.9 Nitroreductase compare
Ga0059261_1513 -0.5 -2.2 hypothetical protein compare
Ga0059261_1908 -0.5 -1.7 Ribonuclease E/G family compare
Ga0059261_3483 -0.5 -1.9 segregation and condensation protein B compare
Ga0059261_0645 -0.5 -1.9 DNA replication and repair protein RecR compare
Ga0059261_1549 -0.5 -1.8 hypothetical protein compare
Ga0059261_3979 -0.5 -1.5 elongation factor 4 compare
Ga0059261_4046 -0.5 -1.5 Response regulator receiver domain compare
Ga0059261_0790 -0.5 -1.0 putative membrane protein insertion efficiency factor compare
Ga0059261_3808 -0.5 -1.2 Pyrroline-5-carboxylate reductase compare
Ga0059261_2371 -0.5 -2.1 hypothetical protein compare
Ga0059261_3835 -0.4 -1.9 Universal stress protein UspA and related nucleotide-binding proteins compare
Ga0059261_3595 -0.4 -2.0 Site-specific recombinase XerD compare
Ga0059261_3341 -0.4 -2.4 ATP-dependent protease HslVU, peptidase subunit compare
Ga0059261_0879 -0.4 -2.8 ribosomal RNA small subunit methyltransferase A compare
Ga0059261_2137 -0.4 -3.5 ABC-type multidrug transport system, ATPase and permease components compare
Ga0059261_0246 -0.4 -0.9 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD compare
Ga0059261_2191 -0.4 -2.8 ribosomal subunit interface protein compare
Ga0059261_0390 -0.4 -0.9 Ribbon-helix-helix protein, copG family compare
Ga0059261_0623 -0.4 -1.8 ABC-type Fe3+-siderophore transport system, permease component compare
Ga0059261_2355 -0.4 -2.5 Ogr/Delta-like zinc finger compare
Ga0059261_3200 -0.4 -3.5 Opacity protein and related surface antigens compare
Ga0059261_2267 -0.4 -3.4 Predicted Rossmann fold nucleotide-binding protein compare
Ga0059261_3617 -0.4 -2.8 hypothetical protein compare
Ga0059261_1368 -0.4 -1.2 hypothetical protein compare
Ga0059261_3345 -0.4 -0.8 TlyA family rRNA methyltransferase/putative hemolysin compare
Ga0059261_2050 -0.4 -1.3 hypothetical protein compare
Ga0059261_0369 -0.4 -0.6 ribosomal protein L9 compare
Ga0059261_0266 -0.4 -0.5 hypothetical protein compare
Ga0059261_4228 -0.4 -2.0 hypothetical protein compare
Ga0059261_3285 -0.4 -1.3 Acyl dehydratase compare
Ga0059261_0133 -0.4 -1.5 GTP-binding protein HflX compare
Ga0059261_3492 -0.4 -1.9 RNA polymerase sigma factor, sigma-70 family compare
Ga0059261_0357 -0.4 -1.3 hypothetical protein compare
Ga0059261_1957 -0.4 -2.2 hypothetical protein compare
Ga0059261_2847 -0.4 -2.4 Enoyl-CoA hydratase/carnithine racemase compare
Ga0059261_0620 -0.4 -3.4 Outer membrane cobalamin receptor protein compare
Ga0059261_1914 -0.4 -1.1 Acetyltransferases compare
Ga0059261_2145 -0.4 -1.7 ribosome-binding factor A compare
Ga0059261_3594 -0.4 -2.8 hypothetical protein compare
Ga0059261_3431 -0.4 -2.5 Uncharacterized protein conserved in bacteria compare
Ga0059261_2326 -0.4 -2.0 Phosphohistidine phosphatase SixA compare
Ga0059261_3506 -0.4 -0.7 Predicted permeases compare
Ga0059261_0494 -0.4 -0.8 ABC-type antimicrobial peptide transport system, ATPase component compare
Ga0059261_0931 -0.4 -1.0 molybdenum cofactor biosynthesis protein MoaC compare
Ga0059261_3220 -0.4 -3.3 Cytochrome b subunit of the bc complex compare
Ga0059261_0248 -0.4 -1.6 hypothetical protein compare
Ga0059261_3305 -0.4 -2.3 Uncharacterized conserved protein compare
Ga0059261_4122 -0.4 -1.4 Gluconate 2-dehydrogenase subunit 3 compare
Ga0059261_1185 -0.4 -1.3 Thiolase, C-terminal domain compare
Ga0059261_1451 -0.4 -1.4 3-oxoacyl-[acyl-carrier-protein] reductase (EC 1.1.1.100) compare
Ga0059261_2084 -0.4 -1.7 FlgN protein compare
Ga0059261_3276 -0.4 -2.3 ABC-type multidrug transport system, ATPase and permease components compare
Ga0059261_0606 -0.4 -2.1 Glycosyltransferases involved in cell wall biogenesis compare
Ga0059261_2965 -0.4 -2.5 Sugar kinases, ribokinase family compare
Ga0059261_1932 -0.4 -3.0 Peptidase family M23 compare
Ga0059261_3094 -0.4 -2.3 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase/FKBP-type peptidyl-prolyl cis-trans isomerase compare
Ga0059261_2540 -0.4 -0.8 Uncharacterized protein conserved in bacteria compare
Ga0059261_3625 -0.4 -1.7 Short-chain dehydrogenases of various substrate specificities compare
Ga0059261_1419 -0.4 -1.5 fructose-6-phosphate aldolase, TalC/MipB family compare
Ga0059261_1339 -0.4 -0.6 hypothetical protein compare
Ga0059261_2691 -0.4 -1.1 Zn-dependent dipeptidase, microsomal dipeptidase homolog compare
Ga0059261_1010 -0.4 -2.7 Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family compare
Ga0059261_1316 -0.4 -0.5 hypothetical protein compare
Ga0059261_2461 -0.4 -2.1 hypothetical protein compare
Ga0059261_1438 -0.4 -2.1 Membrane proteins related to metalloendopeptidases compare
Ga0059261_1547 -0.4 -2.3 Uncharacterized protein required for cytochrome oxidase assembly compare
Ga0059261_2462 -0.4 -1.6 Predicted transcriptional regulators compare
Ga0059261_0951 -0.4 -1.6 hypothetical protein compare
Ga0059261_3096 -0.4 -2.5 PDZ domain compare
Ga0059261_2444 -0.4 -1.9 5-aminolevulinic acid synthase compare
Ga0059261_0990 -0.4 -3.1 methionine synthase (B12-dependent) (EC 2.1.1.13) compare
Ga0059261_0662 -0.4 -1.8 Truncated hemoglobins compare
Ga0059261_1397 -0.3 -2.9 Cyclopropane fatty acid synthase and related methyltransferases compare
Ga0059261_1799 -0.3 -1.1 Uncharacterized protein conserved in bacteria (DUF2059) compare
Ga0059261_2214 -0.3 -2.3 hypothetical protein compare


Specific Phenotypes

For 1 genes in this experiment

For stress Tetracycline hydrochloride in Sphingomonas koreensis DSMZ 15582

For stress Tetracycline hydrochloride across organisms