Experiment set2IT093 for Sphingomonas koreensis DSMZ 15582

Compare to:

LB with Tetracycline hydrochloride 0.001 mg/ml

200 most detrimental genes:

  gene name fitness t score description  
Ga0059261_3939 +1.3 8.3 transcriptional regulator, TetR family compare
Ga0059261_3440 +1.1 2.5 hypothetical protein compare
Ga0059261_1381 +1.1 5.4 Membrane protease subunits, stomatin/prohibitin homologs compare
Ga0059261_3938 +1.1 8.1 Imidazolonepropionase and related amidohydrolases compare
Ga0059261_0650 +1.0 2.5 Negative regulator of beta-lactamase expression compare
Ga0059261_1545 +1.0 5.1 Fe2+/Zn2+ uptake regulation proteins compare
Ga0059261_3759 +1.0 2.3 hypothetical protein compare
Ga0059261_3937 +1.0 8.4 Imidazolonepropionase and related amidohydrolases compare
Ga0059261_1351 +1.0 8.6 signal peptide peptidase SppA, 67K type compare
Ga0059261_1860 +0.9 1.2 Transposase compare
Ga0059261_3783 +0.9 3.7 hypothetical protein compare
Ga0059261_4013 +0.9 2.9 hypothetical protein compare
Ga0059261_2020 +0.9 7.1 Glycosyltransferase compare
Ga0059261_1257 +0.9 6.1 Uncharacterized iron-regulated protein compare
Ga0059261_2285 +0.8 2.1 Fe2+ transport system protein A compare
Ga0059261_2713 +0.8 1.2 hypothetical protein compare
Ga0059261_2239 +0.8 6.1 tRNA and rRNA cytosine-C5-methylases compare
Ga0059261_2746 +0.8 4.4 Predicted sugar nucleotidyltransferases compare
Ga0059261_1831 +0.7 1.9 hypothetical protein compare
Ga0059261_1050 +0.7 2.0 hypothetical protein compare
Ga0059261_0252 +0.7 2.6 SpoIIAA-like compare
Ga0059261_2413 +0.7 1.9 hypothetical protein compare
Ga0059261_3784 +0.7 5.2 DNA mismatch repair protein MutS compare
Ga0059261_1569 +0.7 2.9 Response regulator receiver domain compare
Ga0059261_4192 +0.7 2.9 ATPases involved in chromosome partitioning compare
Ga0059261_3969 +0.6 2.6 Serine hydrolase compare
Ga0059261_1380 +0.6 4.9 Membrane protease subunits, stomatin/prohibitin homologs compare
Ga0059261_3569 +0.6 2.0 chaperone protein DnaJ compare
Ga0059261_0344 +0.6 1.3 Molecular chaperone (small heat shock protein) compare
Ga0059261_1774 +0.6 0.9 hypothetical protein compare
Ga0059261_2981 +0.6 5.3 Uncharacterized protein conserved in bacteria compare
Ga0059261_2745 +0.6 5.1 Myo-inositol-1-phosphate synthase compare
Ga0059261_0685 +0.6 1.5 pyruvate kinase compare
Ga0059261_3227 +0.6 1.5 GTP-binding protein YchF compare
Ga0059261_3125 +0.6 1.6 Imidazoleglycerol-phosphate synthase compare
Ga0059261_3129 +0.6 4.2 SLBB domain/Polysaccharide biosynthesis/export protein compare
Ga0059261_1310 +0.6 2.5 Predicted transcriptional regulators compare
Ga0059261_3124 +0.5 2.0 imidazole glycerol phosphate synthase, glutamine amidotransferase subunit compare
Ga0059261_0305 +0.5 2.5 bacterioferritin compare
Ga0059261_2680 +0.5 1.2 hypothetical protein compare
Ga0059261_1196 +0.5 1.2 hypothetical protein compare
Ga0059261_0393 +0.5 1.8 hypothetical protein compare
Ga0059261_1519 +0.5 2.5 NUDIX domain compare
Ga0059261_0657 +0.5 1.0 Uncharacterized protein conserved in bacteria compare
Ga0059261_1258 +0.5 4.8 TonB-dependent siderophore receptor compare
Ga0059261_0811 +0.5 1.6 Archaeal fructose-1,6-bisphosphatase and related enzymes of inositol monophosphatase family compare
Ga0059261_3289 +0.5 0.9 Predicted membrane protein compare
Ga0059261_1762 +0.5 1.2 hypothetical protein compare
Ga0059261_4054 +0.5 1.6 Uncharacterized protein conserved in bacteria compare
Ga0059261_1064 +0.5 1.7 Uncharacterized conserved protein compare
Ga0059261_2980 +0.5 4.5 Outer membrane protein compare
Ga0059261_2019 +0.5 2.6 Uncharacterized protein conserved in bacteria compare
Ga0059261_3904 +0.5 1.5 Predicted membrane protein compare
Ga0059261_1929 +0.5 2.5 Putative transmembrane protein (Alph_Pro_TM) compare
Ga0059261_0155 +0.5 3.3 peroxiredoxin compare
Ga0059261_1197 +0.5 2.2 hypothetical protein compare
Ga0059261_0723 +0.5 1.3 hypothetical protein compare
Ga0059261_0272 +0.5 2.0 Uncharacterized small protein compare
Ga0059261_1517 +0.5 3.1 Predicted acetyltransferase compare
Ga0059261_1261 +0.4 1.9 hypothetical protein compare
Ga0059261_2966 +0.4 2.1 2-deoxy-D-gluconate 3-dehydrogenase compare
Ga0059261_3566 +0.4 2.0 hypothetical protein compare
Ga0059261_0403 +0.4 2.4 Micrococcal nuclease (thermonuclease) homologs compare
Ga0059261_2471 +0.4 1.2 hypothetical protein compare
Ga0059261_4196 +0.4 3.1 FemAB-related protein, PEP-CTERM system-associated compare
Ga0059261_3839 +0.4 1.8 hypothetical protein compare
Ga0059261_3437 +0.4 0.9 hypothetical protein compare
Ga0059261_1263 +0.4 1.8 hypothetical protein compare
Ga0059261_1070 +0.4 2.3 pseudouridine synthase compare
Ga0059261_2744 +0.4 3.1 CDP-alcohol phosphatidyltransferase compare
Ga0059261_0738 +0.4 2.1 Predicted transcriptional regulators compare
Ga0059261_4140 +0.4 1.7 hypothetical protein compare
Ga0059261_4217 +0.4 0.9 hypothetical protein compare
Ga0059261_0864 +0.4 1.4 hypothetical protein compare
Ga0059261_1652 +0.4 0.8 L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily compare
Ga0059261_0169 +0.4 2.0 hypothetical protein compare
Ga0059261_2570 +0.4 1.6 Type IV secretory pathway, TrbD component compare
Ga0059261_0814 +0.4 2.2 hypothetical protein compare
Ga0059261_4190 +0.4 2.7 Periplasmic protein involved in polysaccharide export compare
Ga0059261_1016 +0.4 1.0 Cupin domain compare
Ga0059261_2445 +0.4 1.5 hypothetical protein compare
Ga0059261_3685 +0.4 2.1 Enoyl-CoA hydratase/carnithine racemase compare
Ga0059261_2648 +0.4 1.5 Transcriptional regulators compare
Ga0059261_3127 +0.4 2.3 hypothetical protein compare
Ga0059261_4197 +0.4 2.8 sugar transferase, PEP-CTERM/EpsH1 system associated compare
Ga0059261_1833 +0.4 2.1 hypothetical protein compare
Ga0059261_3994 +0.4 1.9 hypothetical protein compare
Ga0059261_0917 +0.4 2.9 Predicted P-loop-containing kinase compare
Ga0059261_2892 +0.4 1.0 hypothetical protein compare
Ga0059261_0264 +0.4 2.6 HAD superfamily, subfamily IIIB (Acid phosphatase) compare
Ga0059261_1214 +0.4 0.8 hypothetical protein compare
Ga0059261_0087 +0.4 0.9 hypothetical protein compare
Ga0059261_1560 +0.4 1.4 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain compare
Ga0059261_3545 +0.4 0.7 hypothetical protein compare
Ga0059261_3966 +0.4 1.3 Transcriptional regulators compare
Ga0059261_0073 +0.4 2.0 hypothetical protein compare
Ga0059261_1115 +0.4 0.6 Chemotaxis protein; stimulates methylation of MCP proteins compare
Ga0059261_2978 +0.4 1.4 Transcriptional regulators compare
Ga0059261_3210 +0.3 1.1 Organic radical activating enzymes compare
Ga0059261_3512 +0.3 1.0 glutamate 5-kinase (EC 2.7.2.11) (from data) compare
Ga0059261_3327 +0.3 1.8 hypothetical protein compare
Ga0059261_1335 +0.3 1.5 Predicted ATPase compare
Ga0059261_3083 +0.3 1.1 hypothetical protein compare
Ga0059261_3990 +0.3 2.2 hypothetical protein compare
Ga0059261_0156 +0.3 2.4 alkyl hydroperoxide reductase subunit F compare
Ga0059261_2858 +0.3 2.1 Enoyl-CoA hydratase/carnithine racemase compare
Ga0059261_1169 +0.3 1.1 hypothetical protein compare
Ga0059261_3128 +0.3 2.6 capsular exopolysaccharide family compare
Ga0059261_0039 +0.3 1.5 His Kinase A (phospho-acceptor) domain compare
Ga0059261_2897 +0.3 1.1 hypothetical protein compare
Ga0059261_3693 +0.3 2.4 Putative arginyl-tRNA:protein arginylyltransferase compare
Ga0059261_4214 +0.3 0.8 Enoyl-CoA hydratase/carnithine racemase compare
Ga0059261_3164 +0.3 1.4 Protein of unknown function (DUF3297) compare
Ga0059261_1985 +0.3 0.8 transcriptional regulator NrdR compare
Ga0059261_3216 +0.3 1.0 Acetyltransferases compare
Ga0059261_1301 +0.3 1.3 Methyltransferase domain compare
Ga0059261_0267 +0.3 0.8 Predicted membrane protein compare
Ga0059261_4029 +0.3 1.9 hypothetical protein compare
Ga0059261_1334 +0.3 1.5 Uncharacterized protein, possibly involved in aromatic compounds catabolism compare
Ga0059261_1195 +0.3 1.1 Co/Zn/Cd efflux system component compare
Ga0059261_3752 +0.3 1.3 Uncharacterized protein conserved in bacteria compare
Ga0059261_2400 +0.3 1.6 Uncharacterized conserved protein compare
Ga0059261_2086 +0.3 0.6 SAF-like compare
Ga0059261_1795 +0.3 1.8 Predicted nucleoside-diphosphate-sugar epimerases compare
Ga0059261_1994 +0.3 1.9 Uncharacterized protein conserved in bacteria compare
Ga0059261_0420 +0.3 1.7 FecR family protein compare
Ga0059261_4199 +0.3 2.6 asparagine synthase (glutamine-hydrolyzing) compare
Ga0059261_0935 +0.3 1.5 Uncharacterized conserved protein compare
Ga0059261_3637 +0.3 0.9 Uncharacterized protein conserved in bacteria compare
Ga0059261_3877 +0.3 0.8 hypothetical protein compare
Ga0059261_3261 +0.3 2.1 Protein of unknown function (DUF938) compare
Ga0059261_2708 +0.3 1.1 hypothetical protein compare
Ga0059261_0992 +0.3 1.6 5,10-methylenetetrahydrofolate reductase, prokaryotic form compare
Ga0059261_2524 +0.3 2.2 Uracil-DNA glycosylase (EC 3.2.2.-) compare
Ga0059261_2438 +0.3 2.0 Putative lumazine-binding compare
Ga0059261_3646 +0.3 1.1 Uncharacterized stress protein (general stress protein 26) compare
Ga0059261_1573 +0.3 1.3 hypothetical protein compare
Ga0059261_0853 +0.3 1.3 peroxiredoxin, Ohr subfamily compare
Ga0059261_1415 +0.3 1.2 UDP-N-acetylmuramate-alanine ligase compare
Ga0059261_0896 +0.3 1.6 Citrate lyase beta subunit compare
Ga0059261_2731 +0.3 1.3 transcriptional regulator, AraC family compare
Ga0059261_2939 +0.3 1.8 Uncharacterized protein conserved in bacteria compare
Ga0059261_3622 +0.3 1.5 hypothetical protein compare
Ga0059261_3702 +0.3 1.7 NAD(P)H:quinone oxidoreductase, type IV compare
Ga0059261_1361 +0.3 2.3 sugar transferase, PEP-CTERM system associated/exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase compare
Ga0059261_2558 +0.3 1.4 DoxX-like family compare
Ga0059261_3598 +0.3 1.0 Flp pilus assembly protein, pilin Flp compare
Ga0059261_3097 +0.3 1.6 Calcineurin-like phosphoesterase compare
Ga0059261_3050 +0.3 2.0 N-acyl-L-homoserine lactone synthetase compare
Ga0059261_2109 +0.3 1.1 hypothetical protein compare
Ga0059261_0447 +0.3 1.3 SnoaL-like domain compare
Ga0059261_1595 +0.3 2.5 Membrane protein involved in the export of O-antigen and teichoic acid compare
Ga0059261_3362 +0.3 2.6 Lipid A core - O-antigen ligase and related enzymes compare
Ga0059261_3139 +0.3 1.5 Predicted membrane protein compare
Ga0059261_3321 +0.3 1.0 pyrroline-5-carboxylate reductase compare
Ga0059261_4080 +0.3 1.4 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
Ga0059261_2222 +0.3 1.9 Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family compare
Ga0059261_1962 +0.3 0.6 RNase HII (EC 3.1.26.4) compare
Ga0059261_0625 +0.3 0.9 nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21) compare
Ga0059261_1490 +0.3 2.3 Glycosyltransferase compare
Ga0059261_0946 +0.3 1.2 Uncharacterized protein conserved in bacteria compare
Ga0059261_3438 +0.3 1.7 Nucleotidyltransferase/DNA polymerase involved in DNA repair compare
Ga0059261_2466 +0.3 2.0 DnaJ domain/DnaJ C terminal domain compare
Ga0059261_4185 +0.3 0.6 hypothetical protein compare
Ga0059261_3107 +0.3 1.7 EPS-associated transcriptional regulator, MarR family compare
Ga0059261_0268 +0.3 1.0 Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily compare
Ga0059261_0525 +0.3 0.8 Transcriptional regulator compare
Ga0059261_0532 +0.3 1.9 RNA polymerase sigma factor, sigma-70 family compare
Ga0059261_2933 +0.3 1.6 hypothetical protein compare
Ga0059261_0659 +0.3 0.7 transcriptional regulator, HxlR family compare
Ga0059261_1952 +0.3 1.8 Cupin domain compare
Ga0059261_0898 +0.3 0.9 Membrane protein implicated in regulation of membrane protease activity compare
Ga0059261_2076 +0.3 0.5 hypothetical protein compare
Ga0059261_2420 +0.3 0.9 transcriptional regulator, TetR family compare
Ga0059261_1181 +0.3 1.1 hypothetical protein compare
Ga0059261_3383 +0.3 1.5 transcriptional regulator, TetR family compare
Ga0059261_1896 +0.3 1.7 Ketoglutarate semialdehyde dehydrogenase (EC 1.2.1.26) (from data) compare
Ga0059261_0412 +0.3 0.8 DNA-binding HTH domain-containing proteins compare
Ga0059261_3700 +0.3 0.8 Transcriptional regulator compare
Ga0059261_0379 +0.3 0.8 DNA binding domain, excisionase family compare
Ga0059261_0973 +0.3 1.1 hypothetical protein compare
Ga0059261_1022 +0.3 0.9 hypothetical protein compare
Ga0059261_3573 +0.2 1.6 Bacterial PH domain compare
Ga0059261_2613 +0.2 1.7 AraC-type DNA-binding domain-containing proteins compare
Ga0059261_3364 +0.2 2.2 PEP-CTERM/exosortase A-associated glycosyltransferase, Daro_2409 family compare
Ga0059261_1803 +0.2 1.6 Domain of unknown function (DUF4136) compare
Ga0059261_3073 +0.2 1.2 Type IV secretory pathway, VirB2 components (pilins) compare
Ga0059261_0773 +0.2 1.0 Esterase/lipase compare
Ga0059261_3121 +0.2 1.5 asparagine synthase (glutamine-hydrolyzing) compare
Ga0059261_3948 +0.2 0.8 type II secretion system protein H compare
Ga0059261_4193 +0.2 2.2 hypothetical protein compare
Ga0059261_1122 +0.2 0.6 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) compare
Ga0059261_2675 +0.2 1.6 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
Ga0059261_3810 +0.2 1.3 Transcriptional regulators compare
Ga0059261_0191 +0.2 1.6 hypothetical protein compare
Ga0059261_0980 +0.2 1.5 polyhydroxyalkanoate synthesis repressor PhaR compare
Ga0059261_0428 +0.2 1.7 Copper chaperone compare
Ga0059261_0433 +0.2 0.6 Uncharacterized protein conserved in bacteria compare
Ga0059261_0735 +0.2 1.4 5,10-methenyltetrahydrofolate synthetase compare
Ga0059261_0548 +0.2 1.7 Gluconate 2-dehydrogenase subunit 3 compare


Specific Phenotypes

For 1 genes in this experiment

For stress Tetracycline hydrochloride in Sphingomonas koreensis DSMZ 15582

For stress Tetracycline hydrochloride across organisms