Experiment set2IT093 for Cupriavidus basilensis FW507-4G11

Compare to:

L-Tryptophan nitrogen source

200 most detrimental genes:

  gene name fitness t score description  
RR42_RS24550 +1.4 1.8 hypothetical protein compare
RR42_RS05085 +1.4 3.1 2-aminomuconate deaminase compare
RR42_RS08770 +1.4 1.7 2-nitropropane dioxygenase compare
RR42_RS21470 +1.3 1.5 hypothetical protein compare
RR42_RS08220 +1.3 1.8 hypothetical protein compare
RR42_RS17805 +1.2 1.5 hypothetical protein compare
RR42_RS08185 +1.2 1.9 hypothetical protein compare
RR42_RS18725 +1.2 3.4 hypothetical protein compare
RR42_RS26080 +1.2 1.4 hypothetical protein compare
RR42_RS05755 +1.1 2.5 enoyl-CoA hydratase compare
RR42_RS25650 +1.1 1.7 hypothetical protein compare
RR42_RS23305 +1.1 1.0 hypothetical protein compare
RR42_RS12240 +1.1 1.9 hypothetical protein compare
RR42_RS04735 +1.1 1.9 hypothetical protein compare
RR42_RS03020 +1.0 1.6 MarR family transcriptional regulator compare
RR42_RS35725 +1.0 2.1 flagellar biosynthesis protein FlgB compare
RR42_RS04850 +1.0 1.0 hypothetical protein compare
RR42_RS23595 +1.0 2.7 dTDP-4-dehydrorhamnose 3,5-epimerase compare
RR42_RS16565 +1.0 3.5 hypothetical protein compare
RR42_RS05080 +1.0 3.4 3-hydroxyanthranilate 3,4-dioxygenase compare
RR42_RS27320 +1.0 1.2 ferredoxin compare
RR42_RS12880 +1.0 3.6 membrane protein compare
RR42_RS28005 +1.0 1.8 phosphonate/organophosphate ester transporter subunit compare
RR42_RS21455 +1.0 2.5 transposase compare
RR42_RS31435 +0.9 1.7 hypothetical protein compare
RR42_RS16360 +0.9 1.8 transposase compare
RR42_RS36835 +0.9 2.3 cytochrome P450 compare
RR42_RS13130 +0.9 1.7 membrane protein compare
RR42_RS22030 +0.9 2.0 hypothetical protein compare
RR42_RS10855 +0.9 1.1 diguanylate phosphodiesterase compare
RR42_RS02960 +0.9 2.2 triphosphoribosyl-dephospho-CoA synthase compare
RR42_RS29505 +0.9 1.7 hypothetical protein compare
RR42_RS04125 +0.9 3.5 lipoprotein compare
RR42_RS26875 +0.9 2.7 LysR family transcriptional regulator compare
RR42_RS04810 +0.9 2.0 glycine/betaine ABC transporter permease compare
RR42_RS18310 +0.8 1.3 indole-3-glycerol-phosphate synthase compare
RR42_RS26455 +0.8 1.2 amino acid ABC transporter ATP-binding protein compare
RR42_RS07130 +0.8 1.8 hypothetical protein compare
RR42_RS32960 +0.8 2.2 2-dehydropantoate 2-reductase compare
RR42_RS30735 +0.8 1.8 tRNA-Met compare
RR42_RS05075 +0.8 2.4 aminocarboxymuconate-semialdehyde decarboxylase compare
RR42_RS33505 +0.8 3.2 AsnC family transcriptional regulator compare
RR42_RS30765 +0.8 1.1 tRNA-Arg compare
RR42_RS17970 +0.8 1.3 hypothetical protein compare
RR42_RS07380 +0.8 2.6 dihydrolipoamide dehydrogenase compare
RR42_RS10280 +0.8 3.1 hypothetical protein compare
RR42_RS12155 +0.8 1.9 molecular chaperone compare
RR42_RS01330 +0.8 3.2 Fis family transcriptional regulator compare
RR42_RS15060 +0.8 2.2 membrane protein compare
RR42_RS03670 +0.8 1.2 isochorismatase compare
RR42_RS05895 +0.8 2.1 rhombosortase compare
RR42_RS05425 +0.8 3.4 membrane protein compare
RR42_RS34570 +0.8 1.7 hypothetical protein compare
RR42_RS00360 +0.8 1.8 Asp/Glu/hydantoin racemase compare
RR42_RS35110 +0.8 1.8 hypothetical protein compare
RR42_RS26085 +0.8 2.2 acetoacetyl-CoA reductase compare
RR42_RS20360 +0.7 1.2 AsnC family transcriptional regulator compare
RR42_RS22940 +0.7 1.2 TetR family transcriptional regulator compare
RR42_RS00655 +0.7 2.6 membrane protein compare
RR42_RS15800 +0.7 1.8 aldo/keto reductase compare
RR42_RS27215 +0.7 1.8 LysR family transcriptional regulator compare
RR42_RS03910 +0.7 2.0 (2Fe-2S)-binding protein compare
RR42_RS12485 +0.7 2.2 ABC transporter ATP-binding protein compare
RR42_RS27095 +0.7 1.9 hypothetical protein compare
RR42_RS33500 +0.7 4.4 4-hydroxyphenylpyruvate dioxygenase compare
RR42_RS03980 +0.7 2.2 Fis family transcriptional regulator compare
RR42_RS37110 +0.7 2.2 hypothetical protein compare
RR42_RS32670 +0.7 1.3 phenol hydroxylase compare
RR42_RS30980 +0.7 1.5 hypothetical protein compare
RR42_RS29630 +0.7 2.8 hypothetical protein compare
RR42_RS22275 +0.7 1.7 hypothetical protein compare
RR42_RS21690 +0.7 0.8 acetyltransferase compare
RR42_RS06405 +0.7 1.8 membrane protein compare
RR42_RS30310 +0.7 1.3 signal transduction protein compare
RR42_RS32710 +0.7 1.6 hypothetical protein compare
RR42_RS07150 +0.7 0.9 hypothetical protein compare
RR42_RS19485 +0.7 0.9 general secretion pathway protein GspH compare
RR42_RS10565 +0.7 1.7 alpha/beta hydrolase compare
RR42_RS19465 +0.7 5.1 AsnC family transcriptional regulator compare
RR42_RS03635 +0.7 1.4 trypsin-like serine protease compare
RR42_RS24520 +0.7 1.4 hypothetical protein compare
RR42_RS03370 +0.7 1.8 fructose ABC transporter, substrate-binding component (FrcB) (from data) compare
RR42_RS08480 +0.7 1.7 hypothetical protein compare
RR42_RS05975 +0.7 2.9 ferredoxin compare
RR42_RS08505 +0.7 2.1 DNA-binding protein compare
RR42_RS15185 +0.6 2.7 LysR family transcriptional regulator compare
RR42_RS32645 +0.6 0.9 2-keto-4-pentenoate hydratase compare
RR42_RS13420 +0.6 1.7 phosphohistidine phosphatase compare
RR42_RS22400 +0.6 2.3 FMN reductase compare
RR42_RS34680 +0.6 1.0 short-chain dehydrogenase compare
RR42_RS15120 +0.6 1.2 4-oxalocrotonate tautomerase compare
RR42_RS07310 +0.6 2.1 hypothetical protein compare
RR42_RS19690 +0.6 1.3 Tat pathway signal protein compare
RR42_RS27910 +0.6 2.2 Crp/Fnr family transcriptional regulator compare
RR42_RS07200 +0.6 1.4 hypothetical protein compare
RR42_RS01485 +0.6 1.7 phosphonate transporter compare
RR42_RS20370 +0.6 0.9 pterin-4-alpha-carbinolamine dehydratase compare
RR42_RS11635 +0.6 2.5 signal transduction protein compare
RR42_RS22010 +0.6 3.3 histidine kinase compare
RR42_RS23230 +0.6 1.4 glycerate kinase compare
RR42_RS16495 +0.6 1.9 branched-chain amino acid aminotransferase compare
RR42_RS35705 +0.6 2.4 flagellar basal body rod protein FlgF compare
RR42_RS15695 +0.6 2.9 glycosyl transferase compare
RR42_RS20855 +0.6 2.4 cold-shock protein compare
RR42_RS35240 +0.6 1.8 acyl-CoA dehydrogenase compare
RR42_RS07920 +0.6 1.1 cyclophilin-like superfamily protein compare
RR42_RS04100 +0.6 1.8 pilus assembly protein CpaF compare
RR42_RS34450 +0.6 2.5 glycosyl transferase compare
RR42_RS07450 +0.6 2.2 ABC transporter permease compare
RR42_RS29610 +0.6 0.8 cytochrome C2 compare
RR42_RS25945 +0.6 2.2 MFS transporter compare
RR42_RS01045 +0.6 1.0 Fur family transcriptional regulator compare
RR42_RS33970 +0.6 2.7 LysR family transcriptional regulator compare
RR42_RS26535 +0.6 1.5 diguanylate cyclase compare
RR42_RS25510 +0.6 0.9 short-chain dehydrogenase compare
RR42_RS20260 +0.6 1.7 hypothetical protein compare
RR42_RS25720 +0.6 1.7 hypothetical protein compare
RR42_RS20965 +0.6 1.1 transferase compare
RR42_RS34525 +0.6 1.8 type VI secretion protein VasK compare
RR42_RS02225 +0.6 2.1 ABC transporter substrate-binding protein compare
RR42_RS11605 +0.6 1.3 OsmY domain-containing protein compare
RR42_RS16335 +0.6 1.2 hypothetical protein compare
RR42_RS06255 +0.6 1.3 lipoprotein compare
RR42_RS30195 +0.6 2.1 MarR family transcriptional regulator compare
RR42_RS31920 +0.6 1.0 acetyl-CoA acetyltransferase compare
RR42_RS31580 +0.6 2.7 3-hydroxybutyryl-CoA dehydratase compare
RR42_RS13860 +0.6 2.5 hypothetical protein compare
RR42_RS01535 +0.6 1.4 3-isopropylmalate dehydratase compare
RR42_RS14335 +0.6 1.6 sporulation protein compare
RR42_RS35900 +0.6 3.1 hypothetical protein compare
RR42_RS37320 +0.6 1.2 hypothetical protein compare
RR42_RS36335 +0.6 1.4 enoyl-CoA hydratase compare
RR42_RS12090 +0.6 2.5 monooxygenase compare
RR42_RS19685 +0.6 1.1 thiosulfate oxidation carrier complex protein SoxZ compare
RR42_RS33495 +0.6 4.7 L-phenylalanine:H+ symporter AroP (from data) compare
RR42_RS31830 +0.6 0.7 short-chain dehydrogenase compare
RR42_RS21450 +0.5 2.0 hypothetical protein compare
RR42_RS35235 +0.5 1.0 glutathione ABC transporter permease compare
RR42_RS21055 +0.5 1.4 excisionase compare
RR42_RS03085 +0.5 0.7 RecX family transcriptional regulator compare
RR42_RS23250 +0.5 1.4 glyoxalase compare
RR42_RS05865 +0.5 2.3 hypothetical protein compare
RR42_RS30445 +0.5 2.2 cation:proton antiporter compare
RR42_RS34435 +0.5 2.7 transferase compare
RR42_RS28235 +0.5 2.3 hydrolase compare
RR42_RS00720 +0.5 2.4 patatin compare
RR42_RS34425 +0.5 2.2 hypothetical protein compare
RR42_RS27065 +0.5 1.0 hypothetical protein compare
RR42_RS35295 +0.5 1.3 diguanylate cyclase compare
RR42_RS06925 +0.5 1.0 hypothetical protein compare
RR42_RS37055 +0.5 1.5 hypothetical protein compare
RR42_RS35085 +0.5 2.0 MarR family transcriptional regulator compare
RR42_RS16615 +0.5 2.6 hypothetical protein compare
RR42_RS13830 +0.5 0.8 hypothetical protein compare
RR42_RS23870 +0.5 0.8 hypothetical protein compare
RR42_RS07255 +0.5 1.0 hypothetical protein compare
RR42_RS01320 +0.5 1.7 ATPase AAA compare
RR42_RS16640 +0.5 0.9 LysR family transcriptional regulator compare
RR42_RS08615 +0.5 0.8 membrane protein compare
RR42_RS08860 +0.5 1.3 radical SAM protein compare
RR42_RS29060 +0.5 2.3 LacI family transcriptional regulator compare
RR42_RS06850 +0.5 1.2 hypothetical protein compare
RR42_RS35755 +0.5 2.7 flagellar biosynthesis protein FlhG compare
RR42_RS34565 +0.5 1.2 GDP-mannose mannosyl hydrolase compare
RR42_RS34350 +0.5 2.2 blue light sensor protein compare
RR42_RS30105 +0.5 2.2 taurine dioxygenase compare
RR42_RS33690 +0.5 1.0 phosphate acetyltransferase compare
RR42_RS26205 +0.5 2.3 LysR family transcriptional regulator compare
RR42_RS16760 +0.5 1.4 FAD-dependent oxidoreductase compare
RR42_RS09370 +0.5 2.1 transposase compare
RR42_RS27210 +0.5 1.7 hypothetical protein compare
RR42_RS27645 +0.5 1.9 hypothetical protein compare
RR42_RS29190 +0.5 1.9 isomerase compare
RR42_RS02470 +0.5 0.9 dihydroneopterin triphosphate pyrophosphatase compare
RR42_RS14860 +0.5 1.1 hypothetical protein compare
RR42_RS26050 +0.5 1.4 hypothetical protein compare
RR42_RS32655 +0.5 1.6 catechol 2,3-dioxygenase compare
RR42_RS16575 +0.5 1.0 acyl-CoA dehydrogenase compare
RR42_RS02115 +0.5 2.0 arylsulfate sulfotransferase compare
RR42_RS28960 +0.5 2.5 acyl-CoA hydrolase compare
RR42_RS05780 +0.5 1.6 hypothetical protein compare
RR42_RS12870 +0.5 1.9 membrane protein compare
RR42_RS19460 +0.5 2.5 GCN5 family acetyltransferase compare
RR42_RS22680 +0.5 0.9 enoyl-CoA hydratase compare
RR42_RS21020 +0.5 1.7 hypothetical protein compare
RR42_RS14285 +0.5 1.6 lysine transporter LysE compare
RR42_RS07760 +0.5 2.0 thiamine biosynthesis protein ApbE compare
RR42_RS32040 +0.5 2.7 esterase compare
RR42_RS06470 +0.5 1.8 hypothetical protein compare
RR42_RS14520 +0.5 0.5 mobilization protein compare
RR42_RS03630 +0.5 0.7 cold-shock protein compare
RR42_RS03015 +0.5 2.5 enoyl-CoA hydratase compare
RR42_RS36920 +0.5 0.8 TetR family transcriptional regulator compare
RR42_RS27625 +0.5 1.4 TetR family transcriptional regulator compare
RR42_RS23360 +0.5 1.8 flagellar biosynthesis protein flip compare
RR42_RS13595 +0.5 1.1 hypothetical protein compare
RR42_RS33695 +0.5 1.0 membrane protein compare
RR42_RS16185 +0.5 2.1 malonyl-CoA decarboxylase compare
RR42_RS26500 +0.5 2.0 carbon monoxide dehydrogenase compare
RR42_RS03990 +0.5 2.9 aspartate:proton symporter Glt (from data) compare


Specific Phenotypes

For 5 genes in this experiment

For nitrogen source L-Tryptophan in Cupriavidus basilensis FW507-4G11

For nitrogen source L-Tryptophan across organisms