Experiment set2IT092 for Xanthomonas campestris pv. campestris strain 8004

Compare to:

Xantho_MME_glucose_casamino

200 most important genes:

  gene name fitness t score description  
Xcc-8004.5192.1 -5.8 -7.9 hypothetical protein compare
Xcc-8004.271.1 -4.8 -4.7 Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94) compare
Xcc-8004.5193.1 -4.8 -23.5 Outer membrane protein assembly factor YaeT precursor compare
Xcc-8004.2011.1 -4.6 -4.4 Phosphoribosylaminoimidazole carboxylase catalytic subunit (EC 4.1.1.21) compare
Xcc-8004.2012.1 -4.4 -9.3 Phosphoribosylaminoimidazole carboxylase ATPase subunit (EC 4.1.1.21) compare
Xcc-8004.1615.1 -4.1 -3.9 3-dehydroquinate synthase (EC 4.2.3.4) compare
Xcc-8004.601.1 -3.8 -9.9 Phosphoribosylaminoimidazole-succinocarboxamide synthase (EC 6.3.2.6) compare
Xcc-8004.1676.1 -3.8 -9.4 Phosphoribosylformylglycinamidine cyclo-ligase (EC 6.3.3.1) compare
Xcc-8004.4439.1 -3.8 -14.2 Phosphoribosylformylglycinamidine synthase, synthetase subunit (EC 6.3.5.3) / Phosphoribosylformylglycinamidine synthase, glutamine amidotransferase subunit (EC 6.3.5.3) compare
Xcc-8004.4073.1 -3.8 -13.5 Amidophosphoribosyltransferase (EC 2.4.2.14) compare
Xcc-8004.2922.1 -3.5 -3.3 Methylglutaconyl-CoA hydratase (EC 4.2.1.18) compare
Xcc-8004.657.1 -3.5 -8.7 Phosphoribosylamine--glycine ligase (EC 6.3.4.13) compare
Xcc-8004.659.1 -3.3 -4.4 IMP cyclohydrolase (EC 3.5.4.10) / Phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3) compare
Xcc-8004.1372.1 -2.7 -4.7 Trehalose-6-phosphate phosphatase (EC 3.1.3.12) compare
Xcc-8004.3324.1 -2.6 -4.3 Carbonic anhydrase (EC 4.2.1.1) compare
Xcc-8004.2406.1 -2.6 -9.9 Manganese transport protein MntH compare
Xcc-8004.2079.1 -2.4 -4.5 Outer membrane protein GumB, involved in the export of xanthan compare
Xcc-8004.3346.1 -2.4 -4.6 hypothetical protein compare
Xcc-8004.3395.1 -2.3 -3.8 Transcriptional regulator, GntR family compare
Xcc-8004.505.1 -2.3 -9.0 Biotin synthase (EC 2.8.1.6) compare
Xcc-8004.4112.1 -2.1 -4.7 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
Xcc-8004.130.1 -2.1 -8.1 hypothetical protein compare
Xcc-8004.2450.1 -2.1 -13.5 Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) compare
Xcc-8004.2217.1 -2.1 -4.7 FIG01209779: hypothetical protein compare
Xcc-8004.4510.1 -2.1 -1.9 ATP binding component of ABC-transporter compare
Xcc-8004.623.1 -2.1 -3.1 Phosphoserine phosphatase compare
Xcc-8004.2337.1 -1.9 -5.3 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Xcc-8004.4398.1 -1.9 -7.2 Serine hydroxymethyltransferase (EC 2.1.2.1) compare
Xcc-8004.1685.1 -1.8 -1.8 hypothetical protein compare
Xcc-8004.2449.1 -1.8 -5.7 Glucokinase (EC 2.7.1.2) compare
Xcc-8004.1568.1 -1.7 -2.0 Glycine cleavage system H protein compare
Xcc-8004.3976.1 -1.7 -4.5 2-methylaconitate cis-trans isomerase compare
Xcc-8004.3576.1 -1.7 -7.8 Intracellular PHB depolymerase (EC 3.1.1.-) compare
Xcc-8004.4948.1 -1.7 -2.8 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain compare
Xcc-8004.3054.1 -1.7 -1.9 Poly(A) polymerase (EC 2.7.7.19) compare
Xcc-8004.1673.1 -1.6 -5.6 Phosphoribosylglycinamide formyltransferase (EC 2.1.2.2) compare
Xcc-8004.2259.1 -1.6 -4.6 PhbF compare
Xcc-8004.3979.1 -1.5 -7.1 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79) compare
Xcc-8004.2447.1 -1.5 -9.1 Phosphogluconate dehydratase (EC 4.2.1.12) compare
Xcc-8004.797.1 -1.4 -2.5 Cyclohexadienyl dehydratase (EC 4.2.1.51)(EC 4.2.1.91) compare
Xcc-8004.1359.1 -1.4 -5.3 NAD synthetase (EC 6.3.1.5) / Glutamine amidotransferase chain of NAD synthetase compare
Xcc-8004.4824.1 -1.4 -8.5 Beta-glucosidase (EC 3.2.1.21) compare
Xcc-8004.3715.1 -1.4 -2.9 FIG01212258: hypothetical protein compare
Xcc-8004.1567.1 -1.4 -4.5 Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10) compare
Xcc-8004.4200.1 -1.3 -2.5 probably aromatic ring hydroxylating enzyme, evidenced by COGnitor; PaaD-like protein (DUF59) involved in Fe-S cluster assembly compare
Xcc-8004.3433.1 -1.3 -5.2 Outer membrane lipoprotein SmpA, a component of the essential YaeT outer-membrane protein assembly complex compare
Xcc-8004.3473.1 -1.3 -2.4 FIG01213437: hypothetical protein compare
Xcc-8004.3595.1 -1.2 -2.1 Methionyl-tRNA synthetase (EC 6.1.1.10) compare
Xcc-8004.3281.1 -1.2 -5.1 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) compare
Xcc-8004.4481.1 -1.2 -4.8 hypothetical protein compare
Xcc-8004.288.1 -1.2 -1.5 Ferredoxin compare
Xcc-8004.726.1 -1.2 -1.5 Putative preQ0 transporter compare
Xcc-8004.337.1 -1.1 -2.5 ATPase, AFG1 family compare
Xcc-8004.270.1 -1.1 -3.4 Protein export cytoplasm chaperone protein (SecB, maintains protein to be exported in unfolded state) compare
Xcc-8004.1696.1 -1.1 -1.8 N-acetylglutamate synthase (EC 2.3.1.1) compare
Xcc-8004.3728.1 -1.1 -1.6 hypothetical protein compare
Xcc-8004.3816.1 -1.1 -5.3 Cytochrome O ubiquinol oxidase subunit I (EC 1.10.3.-) compare
Xcc-8004.1196.1 -1.1 -5.1 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) compare
Xcc-8004.787.1 -1.1 -1.4 Rrf2 family transcriptional regulator, group III compare
Xcc-8004.3244.1 -1.1 -2.4 DNA repair protein RadC compare
Xcc-8004.2921.1 -1.1 -2.4 ferrous iron transport protein compare
Xcc-8004.1336.1 -1.0 -5.1 two-component system sensor protein compare
Xcc-8004.2086.1 -1.0 -1.7 Xanthan biosynthesis glycosyltransferase GumH compare
Xcc-8004.2561.1 -1.0 -5.6 FIG01213638: hypothetical protein compare
Xcc-8004.4620.1 -1.0 -6.0 Alanine racemase (EC 5.1.1.1) compare
Xcc-8004.3647.1 -1.0 -3.7 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9) compare
Xcc-8004.3878.1 -1.0 -7.4 Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2) compare
Xcc-8004.3537.1 -1.0 -4.0 Asparagine synthetase [glutamine-hydrolyzing] (EC 6.3.5.4) compare
Xcc-8004.3653.1 -1.0 -1.9 FIG01212122: hypothetical protein compare
Xcc-8004.4732.1 -1.0 -1.6 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-) compare
Xcc-8004.2920.1 -1.0 -5.1 Ferrous iron transport protein B compare
Xcc-8004.165.1 -1.0 -1.1 hypothetical protein compare
Xcc-8004.1955.1 -1.0 -3.6 Chorismate synthase (EC 4.2.3.5) compare
Xcc-8004.4493.1 -1.0 -3.0 sugar translocase compare
Xcc-8004.2833.1 -0.9 -2.1 Chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY compare
Xcc-8004.4428.1 -0.9 -2.1 General secretion pathway protein I compare
Xcc-8004.2923.1 -0.9 -4.1 Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) compare
Xcc-8004.2372.1 -0.9 -4.1 Pheromone shutdown protein compare
Xcc-8004.4530.1 -0.9 -2.6 Dethiobiotin synthetase (EC 6.3.3.3) compare
Xcc-8004.4423.1 -0.9 -1.6 General secretion pathway protein N compare
Xcc-8004.3875.1 -0.9 -1.3 FIG01212144: hypothetical protein compare
Xcc-8004.3310.1 -0.9 -3.2 Chromosome partition protein smc compare
Xcc-8004.4241.1 -0.9 -1.2 cytidine and deoxycytidylate deaminase family protein compare
Xcc-8004.2182.1 -0.9 -5.5 NAD-specific glutamate dehydrogenase (EC 1.4.1.2), large form compare
Xcc-8004.2199.1 -0.9 -2.2 Hemerythrin-like protein PA1673 compare
Xcc-8004.290.1 -0.9 -3.1 NAD(P)H steroid dehydrogenase-like protein in alkane synthesis cluster compare
Xcc-8004.4373.1 -0.8 -2.8 LppC putative lipoprotein compare
Xcc-8004.2343.1 -0.8 -1.4 Cytochrome c-type biogenesis protein CcmE, heme chaperone compare
Xcc-8004.409.1 -0.8 -1.6 hypothetical protein compare
Xcc-8004.2931.1 -0.8 -2.6 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) compare
Xcc-8004.1236.1 -0.8 -3.5 NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) compare
Xcc-8004.609.1 -0.8 -1.6 hypothetical protein compare
Xcc-8004.914.1 -0.8 -3.6 tail-specific protease compare
Xcc-8004.5252.1 -0.8 -4.2 FIG01210658: hypothetical protein compare
Xcc-8004.2865.1 -0.8 -1.8 FIG01210234: hypothetical protein compare
Xcc-8004.3620.1 -0.8 -3.1 FIG01210133: hypothetical protein compare
Xcc-8004.3742.1 -0.8 -2.0 Type III effector compare
Xcc-8004.5343.1 -0.8 -4.0 hypothetical protein compare
Xcc-8004.4364.1 -0.8 -2.4 Cell division protein MraZ compare
Xcc-8004.4102.1 -0.8 -1.0 FIG01211949: hypothetical protein compare
Xcc-8004.764.1 -0.8 -1.6 FIG01213873: hypothetical protein compare
Xcc-8004.4441.1 -0.8 -2.2 Tyrosine recombinase XerD compare
Xcc-8004.1809.1 -0.8 -1.1 extracellular serine protease compare
Xcc-8004.1243.1 -0.7 -4.0 Pyruvate kinase (EC 2.7.1.40) compare
Xcc-8004.1414.1 -0.7 -0.9 Lactoylglutathione lyase and related lyases compare
Xcc-8004.4539.1 -0.7 -4.3 Oligopeptidase A (EC 3.4.24.70) compare
Xcc-8004.4046.1 -0.7 -4.3 ATP-dependent protease La (EC 3.4.21.53) Type I compare
Xcc-8004.328.1 -0.7 -2.8 FIG024006: iron uptake protein compare
Xcc-8004.3862.1 -0.7 -3.2 Septum site-determining protein MinC compare
Xcc-8004.1836.1 -0.7 -2.0 hypothetical protein compare
Xcc-8004.4700.1 -0.7 -1.4 FIG01210206: hypothetical protein compare
Xcc-8004.4836.1 -0.7 -2.9 Heme A synthase, cytochrome oxidase biogenesis protein Cox15-CtaA compare
Xcc-8004.1768.1 -0.7 -0.9 Chemotaxis response regulator protein-glutamate methylesterase CheB (EC 3.1.1.61) compare
Xcc-8004.3855.1 -0.7 -3.7 FIG01209965: hypothetical protein compare
Xcc-8004.703.1 -0.7 -1.3 hypothetical protein compare
Xcc-8004.3222.1 -0.7 -1.8 Mobile element protein compare
Xcc-8004.1961.1 -0.7 -1.3 tRNA pseudouridine synthase A (EC 4.2.1.70) compare
Xcc-8004.4069.1 -0.7 -2.6 FIG01211525: hypothetical protein compare
Xcc-8004.934.1 -0.7 -1.3 FolM Alternative dihydrofolate reductase 1 compare
Xcc-8004.3978.1 -0.7 -1.8 FIG01211989: hypothetical protein compare
Xcc-8004.504.1 -0.7 -4.3 8-amino-7-oxononanoate synthase (EC 2.3.1.47) compare
Xcc-8004.2168.1 -0.7 -2.5 tRNA-guanine transglycosylase (EC 2.4.2.29) compare
Xcc-8004.3815.1 -0.7 -2.0 Cytochrome O ubiquinol oxidase subunit III (EC 1.10.3.-) compare
Xcc-8004.4957.1 -0.7 -2.3 hypothetical protein compare
Xcc-8004.2319.1 -0.7 -2.6 Acetylornithine deacetylase (EC 3.5.1.16) compare
Xcc-8004.5132.1 -0.7 -3.0 Heavy metal RND efflux outer membrane protein, CzcC family compare
Xcc-8004.4368.1 -0.7 -0.7 FIG01209977: hypothetical protein compare
Xcc-8004.4327.1 -0.7 -0.9 putative; ORF located using Glimmer/Genemark compare
Xcc-8004.4558.1 -0.7 -1.9 ABC transporter permease compare
Xcc-8004.5201.1 -0.7 -2.2 FIG01211164: hypothetical protein compare
Xcc-8004.3058.1 -0.7 -2.5 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) compare
Xcc-8004.1790.1 -0.7 -1.8 Zinc uptake regulation protein ZUR compare
Xcc-8004.4427.1 -0.7 -2.0 General secretion pathway protein J compare
Xcc-8004.1694.1 -0.6 -4.4 Ferrichrome-iron receptor compare
Xcc-8004.1859.1 -0.6 -1.8 Transcriptional regulator compare
Xcc-8004.4170.1 -0.6 -0.7 LSU ribosomal protein L25p compare
Xcc-8004.1137.1 -0.6 -1.2 FIG006231: RNA-binding protein compare
Xcc-8004.1395.1 -0.6 -1.7 Adenosylcobinamide-phosphate synthase (EC 6.3.1.10) compare
Xcc-8004.2356.1 -0.6 -1.8 Ribosomal large subunit pseudouridine synthase B (EC 4.2.1.70) compare
Xcc-8004.4322.1 -0.6 -1.1 nucleoprotein/polynucleotide-associated enzyme compare
Xcc-8004.1873.1 -0.6 -1.4 Nicotinate-nucleotide adenylyltransferase (EC 2.7.7.18) compare
Xcc-8004.4596.1 -0.6 -3.6 hypothetical protein compare
Xcc-8004.2867.1 -0.6 -1.0 Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) compare
Xcc-8004.3313.1 -0.6 -1.8 LSU ribosomal protein L9p compare
Xcc-8004.1610.1 -0.6 -1.3 MFS transporter compare
Xcc-8004.3130.1 -0.6 -2.8 Protein-L-isoaspartate O-methyltransferase (EC 2.1.1.77) compare
Xcc-8004.1559.1 -0.6 -3.1 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) compare
Xcc-8004.1365.1 -0.6 -0.6 FIG01211058: hypothetical protein compare
Xcc-8004.4705.1 -0.6 -2.8 ABC transporter ATP-binding protein compare
Xcc-8004.785.1 -0.6 -2.7 hypothetical protein compare
Xcc-8004.1671.1 -0.6 -3.5 FIG01211114: hypothetical protein compare
Xcc-8004.1691.1 -0.6 -1.9 FIG019175: putative membrane protein compare
Xcc-8004.1693.1 -0.6 -2.8 Iron-uptake factor PiuC compare
Xcc-8004.3036.1 -0.6 -1.8 L-Proline/Glycine betaine transporter ProP compare
Xcc-8004.738.1 -0.6 -1.5 Malonate decarboxylase gamma subunit compare
Xcc-8004.3341.1 -0.6 -2.3 FIG01209903: hypothetical protein compare
Xcc-8004.403.1 -0.6 -2.5 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14) compare
Xcc-8004.3394.1 -0.6 -2.0 hypothetical protein compare
Xcc-8004.1132.1 -0.6 -1.3 Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) compare
Xcc-8004.1702.1 -0.6 -3.2 Proteins containing SET domain compare
Xcc-8004.3131.1 -0.6 -2.4 hypothetical protein compare
Xcc-8004.1329.1 -0.6 -1.9 Virulence regulator compare
Xcc-8004.3752.1 -0.6 -0.8 Isopenicillin N epimerase (EC 5.1.1.17) compare
Xcc-8004.1279.1 -0.5 -2.0 FIG01210269: hypothetical protein compare
Xcc-8004.1512.1 -0.5 -1.4 RNA polymerase sigma-70 factor compare
Xcc-8004.358.1 -0.5 -1.7 5-Hydroxyisourate Hydrolase (HIUase) (EC 3.5.2.17) compare
Xcc-8004.4210.1 -0.5 -2.8 Thymidine phosphorylase (EC 2.4.2.4) compare
Xcc-8004.1453.1 -0.5 -1.9 hypothetical protein compare
Xcc-8004.4752.1 -0.5 -1.3 DNA topoisomerase I (EC 5.99.1.2) compare
Xcc-8004.3165.1 -0.5 -1.8 Glycosyltransferase (EC 2.4.1.-) compare
Xcc-8004.2544.1 -0.5 -1.4 FIG01210735: hypothetical protein compare
Xcc-8004.2672.1 -0.5 -1.0 hypothetical protein compare
Xcc-8004.3376.1 -0.5 -1.0 Butyryl-CoA dehydrogenase (EC 1.3.99.2) compare
Xcc-8004.2519.1 -0.5 -1.9 FIG01211007: hypothetical protein compare
Xcc-8004.1966.1 -0.5 -2.2 putative; ORF located using Glimmer/Genemark compare
Xcc-8004.3035.1 -0.5 -1.4 Aspartate racemase (EC 5.1.1.13) compare
Xcc-8004.429.1 -0.5 -1.2 hypothetical protein compare
Xcc-8004.3981.1 -0.5 -2.2 Methylisocitrate lyase (EC 4.1.3.30) compare
Xcc-8004.3757.1 -0.5 -1.6 Mobile element protein compare
Xcc-8004.2619.1 -0.5 -3.0 Pterin-4-alpha-carbinolamine dehydratase (EC 4.2.1.96) compare
Xcc-8004.3968.1 -0.5 -1.9 Mobile element protein compare
Xcc-8004.1735.1 -0.5 -1.6 putative; ORF located using Glimmer/Genemark compare
Xcc-8004.462.1 -0.5 -1.9 hypothetical protein compare
Xcc-8004.3655.1 -0.5 -1.0 FIG01210025: hypothetical protein compare
Xcc-8004.1654.1 -0.5 -0.9 Mg/Co/Ni transporter MgtE / CBS domain compare
Xcc-8004.137.1 -0.5 -1.6 FIG01209674: hypothetical protein compare
Xcc-8004.2662.1 -0.5 -1.8 probable membrane protein YPO3302 compare
Xcc-8004.1401.1 -0.5 -1.2 hypothetical protein compare
Xcc-8004.1093.1 -0.5 -3.1 Inner membrane protein of type IV secretion of T-DNA complex, VirB6 compare
Xcc-8004.488.1 -0.5 -3.2 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA compare
Xcc-8004.2320.1 -0.5 -2.6 Acetylglutamate kinase (EC 2.7.2.8) compare
Xcc-8004.5161.1 -0.5 -1.9 FIG01212148: hypothetical protein compare
Xcc-8004.2497.1 -0.5 -0.6 Mobile element protein compare
Xcc-8004.4739.1 -0.5 -2.0 Lipid A core - O-antigen ligase and related enzymes compare
Xcc-8004.2910.1 -0.5 -2.0 Regulatory protein, RpfE type compare
Xcc-8004.2653.1 -0.5 -1.6 hypothetical protein compare
Xcc-8004.1010.1 -0.5 -2.3 Aspartate aminotransferase (EC 2.6.1.1) compare
Xcc-8004.111.1 -0.5 -1.6 FIG01211861: hypothetical protein compare
Xcc-8004.502.1 -0.5 -0.9 Biotin synthesis protein BioH compare
Xcc-8004.2574.1 -0.5 -1.2 FIG004780: hypothetical protein in PFGI-1-like cluster compare


Specific Phenotypes

For 1 genes in this experiment