Experiment set2IT092 for Rahnella sp. WP5

Compare to:

NLDM_metabolites carbon source

200 most important genes:

  gene name fitness t score description  
EX31_RS01595 -3.5 -1.6 phage minor tail protein G compare
EX31_RS12400 -3.4 -5.5 RNA polymerase factor sigma-54 compare
EX31_RS02515 -3.3 -3.2 PAS domain-containing protein compare
EX31_RS18255 -3.2 -2.2 3-phosphoserine/phosphohydroxythreonine transaminase compare
EX31_RS25645 -3.2 -2.1 K(+)-transporting ATPase subunit F compare
EX31_RS08745 -3.1 -2.1 50S ribosomal protein L9 compare
EX31_RS02520 -3.1 -5.1 sigma-54-dependent Fis family transcriptional regulator compare
EX31_RS20190 -3.0 -2.0 PTS glucose transporter subunit IIA compare
EX31_RS12240 -2.9 -2.5 rod shape-determining protein MreC compare
EX31_RS21850 -2.8 -2.6 pyridoxine 5'-phosphate synthase compare
EX31_RS21470 -2.8 -11.5 phosphoglycerate dehydrogenase compare
EX31_RS14340 -2.6 -1.8 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
EX31_RS04035 -2.6 -12.7 phosphoserine phosphatase compare
EX31_RS22800 -2.6 -2.5 ArsC family reductase compare
EX31_RS22625 -2.5 -3.3 5-(carboxyamino)imidazole ribonucleotide mutase compare
EX31_RS08130 -2.5 -2.4 accessory factor UbiK family protein compare
EX31_RS03775 -2.5 -4.6 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
EX31_RS22245 -2.4 -4.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
EX31_RS18540 -2.4 -1.6 cysteine/glutathione ABC transporter permease/ATP-binding protein CydD compare
EX31_RS00985 -2.3 -2.9 type VI secretion protein compare
EX31_RS18525 -2.2 -2.6 DNA translocase FtsK compare
EX31_RS06055 -2.2 -3.5 phosphate ABC transporter ATP-binding protein PstB compare
EX31_RS00920 -2.2 -2.0 DUF1493 family protein compare
EX31_RS02530 -2.0 -3.5 ABC transporter ATP-binding protein compare
EX31_RS18370 -1.9 -2.1 tail protein X compare
EX31_RS22430 -1.9 -2.1 hemolysin expression modulator Hha compare
EX31_RS14620 -1.9 -2.1 SCP2 domain-containing protein compare
EX31_RS07590 -1.9 -3.3 bifunctional chorismate mutase/prephenate dehydrogenase compare
EX31_RS19655 -1.8 -4.5 beta-ketoacyl-ACP synthase I compare
EX31_RS20495 -1.8 -7.6 outer membrane protein assembly factor BamB compare
EX31_RS07255 -1.7 -4.4 serine hydrolase compare
EX31_RS20180 -1.6 -1.4 phosphocarrier protein Hpr compare
EX31_RS22740 -1.6 -8.5 4-hydroxy-tetrahydrodipicolinate synthase compare
EX31_RS08535 -1.6 -2.7 30S ribosome-binding factor RbfA compare
EX31_RS07380 -1.6 -1.9 redox-regulated ATPase YchF compare
EX31_RS25725 -1.6 -1.4 hypothetical protein compare
EX31_RS01805 -1.6 -1.7 hypothetical protein compare
EX31_RS09205 -1.6 -2.5 siderophore-iron reductase FhuF compare
EX31_RS22250 -1.6 -4.0 ATP-dependent protease ATP-binding subunit ClpX compare
EX31_RS19610 -1.5 -6.2 4-phosphoerythronate dehydrogenase PdxB compare
EX31_RS03400 -1.5 -4.4 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase compare
EX31_RS03645 -1.5 -2.4 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH compare
EX31_RS09565 -1.5 -1.0 flagellar hook-length control protein FliK compare
EX31_RS25140 -1.5 -2.5 AlpA family transcriptional regulator compare
EX31_RS20890 -1.5 -2.0 hypothetical protein compare
EX31_RS19385 -1.5 -2.8 NADH-quinone oxidoreductase subunit L compare
EX31_RS20530 -1.5 -5.8 nucleoside-diphosphate kinase compare
EX31_RS06340 -1.5 -1.5 thiol peroxidase compare
EX31_RS16625 -1.5 -0.8 bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase compare
EX31_RS20895 -1.5 -1.8 hypothetical protein compare
EX31_RS25340 -1.4 -3.6 hypothetical protein compare
EX31_RS18785 -1.4 -4.4 DUF2384 domain-containing protein compare
EX31_RS12520 -1.4 -9.4 aerobic respiration two-component sensor histidine kinase ArcB compare
EX31_RS09490 -1.4 -1.7 hypothetical protein compare
EX31_RS03480 -1.4 -2.9 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
EX31_RS21190 -1.4 -3.2 ribonuclease HI compare
EX31_RS03955 -1.4 -5.4 two-component system response regulator ArcA compare
EX31_RS12875 -1.3 -2.3 D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase compare
EX31_RS20975 -1.3 -4.9 glutamate-5-semialdehyde dehydrogenase compare
EX31_RS14005 -1.3 -2.5 4-deoxy-4-formamido-L-arabinose- phosphoundecaprenol deformylase compare
EX31_RS04320 -1.3 -1.4 hypothetical protein compare
EX31_RS23460 -1.3 -6.0 cytochrome ubiquinol oxidase subunit I compare
EX31_RS11315 -1.3 -2.2 flagellar basal body rod protein FlgB compare
EX31_RS23480 -1.3 -2.7 Tol-Pal system protein TolQ compare
EX31_RS14310 -1.3 -3.9 6-phosphofructokinase compare
EX31_RS18445 -1.3 -1.3 DUF2732 domain-containing protein compare
EX31_RS13045 -1.3 -8.0 bifunctional uridylyltransferase/uridylyl-removing protein GlnD compare
EX31_RS00490 -1.3 -2.2 paraquat-inducible protein A compare
EX31_RS03935 -1.2 -7.3 threonine synthase compare
EX31_RS06720 -1.2 -4.2 imidazolonepropionase compare
EX31_RS10575 -1.2 -3.2 hypothetical protein compare
EX31_RS05825 -1.2 -2.2 mannitol-1-phosphate 5-dehydrogenase compare
EX31_RS05785 -1.2 -2.5 superoxide dismutase [Mn] compare
EX31_RS15005 -1.2 -8.4 dihydroxy-acid dehydratase compare
EX31_RS24855 -1.2 -3.5 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF compare
EX31_RS25690 -1.2 -1.2 tyrosine-type recombinase/integrase compare
EX31_RS11525 -1.2 -2.2 UTP--glucose-1-phosphate uridylyltransferase GalU compare
EX31_RS00415 -1.2 -3.3 ABC transporter ATP-binding protein compare
EX31_RS18570 -1.2 -1.0 cold shock-like protein CspD compare
EX31_RS09375 -1.2 -2.0 gamma-glutamylcyclotransferase compare
EX31_RS18290 -1.2 -2.3 phage tail assembly protein compare
EX31_RS03790 -1.2 -2.4 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) compare
EX31_RS19420 -1.2 -2.2 NADH-quinone oxidoreductase subunit NuoE compare
EX31_RS24600 -1.2 -1.0 hypothetical protein compare
EX31_RS22620 -1.2 -4.9 5-(carboxyamino)imidazole ribonucleotide synthase compare
EX31_RS02740 -1.2 -1.5 oxidative damage protection protein compare
EX31_RS20840 -1.2 -2.1 hypothetical protein compare
EX31_RS17265 -1.2 -2.7 hypothetical protein compare
EX31_RS11190 -1.2 -2.6 hypothetical protein compare
EX31_RS19435 -1.2 -1.5 NADH-quinone oxidoreductase subunit A compare
EX31_RS11460 -1.1 -1.6 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
EX31_RS09855 -1.1 -2.5 orotidine-5'-phosphate decarboxylase compare
EX31_RS10375 -1.1 -2.0 hypothetical protein compare
EX31_RS04775 -1.1 -4.5 Hsp33 family molecular chaperone HslO compare
EX31_RS25100 -1.1 -2.1 PAAR domain-containing protein compare
EX31_RS10865 -1.1 -1.8 hypothetical protein compare
EX31_RS06835 -1.1 -3.1 polysaccharide deacetylase compare
EX31_RS02780 -1.1 -2.6 oligosaccharide flippase family protein compare
EX31_RS06975 -1.1 -3.9 YdgA family protein compare
EX31_RS14220 -1.1 -2.2 met regulon transcriptional regulator MetJ compare
EX31_RS15920 -1.1 -2.2 YihD family protein compare
EX31_RS02505 -1.1 -3.3 hypothetical protein compare
EX31_RS14325 -1.1 -5.8 envelope stress sensor histidine kinase CpxA compare
EX31_RS14575 -1.1 -3.7 NAD(P)H-flavin reductase compare
EX31_RS19205 -1.1 -1.6 50S ribosomal protein L25 compare
EX31_RS05175 -1.1 -4.4 glutathione-disulfide reductase compare
EX31_RS01620 -1.1 -2.0 DUF2190 family protein compare
EX31_RS19485 -1.1 -4.3 phosphate acetyltransferase compare
EX31_RS04925 -1.1 -2.6 Fe-S biogenesis protein NfuA compare
EX31_RS24645 -1.1 -1.2 DUF2591 domain-containing protein compare
EX31_RS09500 -1.1 -1.7 hypothetical protein compare
EX31_RS23415 -1.0 -5.2 citrate synthase compare
EX31_RS23320 -1.0 -3.0 alpha-D-glucose phosphate-specific phosphoglucomutase compare
EX31_RS10025 -1.0 -2.2 hypothetical protein compare
EX31_RS20090 -1.0 -1.4 tRNA-Ala compare
EX31_RS15020 -1.0 -7.4 ketol-acid reductoisomerase compare
EX31_RS01850 -1.0 -2.3 type VI secretion system contractile sheath small subunit compare
EX31_RS23440 -1.0 -1.9 2-oxoglutarate dehydrogenase E1 component compare
EX31_RS17985 -1.0 -2.2 acylphosphatase compare
EX31_RS20980 -1.0 -3.5 glutamate 5-kinase compare
EX31_RS21825 -1.0 -4.1 elongation factor 4 compare
EX31_RS00450 -1.0 -1.6 methionine-R-sulfoxide reductase compare
EX31_RS10735 -1.0 -2.4 helix-turn-helix transcriptional regulator compare
EX31_RS22270 -1.0 -0.8 competence protein ComEA compare
EX31_RS04105 -1.0 -1.8 helix-turn-helix domain-containing protein compare
EX31_RS18530 -1.0 -6.1 leucine-responsive transcriptional regulator Lrp compare
EX31_RS16720 -1.0 -3.1 helix-turn-helix domain-containing protein compare
EX31_RS16860 -1.0 -7.5 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
EX31_RS06070 -1.0 -4.7 phosphate ABC transporter substrate-binding protein PstS compare
EX31_RS20265 -1.0 -1.6 YaiI/YqxD family protein compare
EX31_RS06575 -1.0 -1.7 alpha/beta hydrolase compare
EX31_RS01445 -1.0 -1.3 J domain-containing protein compare
EX31_RS20105 -1.0 -2.4 tRNA-Val compare
EX31_RS23465 -1.0 -3.2 cytochrome d ubiquinol oxidase subunit II compare
EX31_RS06065 -1.0 -4.3 phosphate ABC transporter permease PstC compare
EX31_RS19400 -0.9 -1.9 NADH-quinone oxidoreductase subunit NuoI compare
EX31_RS23560 -0.9 -2.1 phosphate starvation-inducible protein compare
EX31_RS09120 -0.9 -2.4 nitrate ABC transporter permease compare
EX31_RS15655 -0.9 -1.2 hypothetical protein compare
EX31_RS25025 -0.9 -1.2 DUF1272 domain-containing protein compare
EX31_RS01900 -0.9 -2.2 hypothetical protein compare
EX31_RS01065 -0.9 -2.6 glycine zipper family protein compare
EX31_RS19600 -0.9 -3.9 tRNA pseudouridine(38-40) synthase TruA compare
EX31_RS01530 -0.9 -1.0 hypothetical protein compare
EX31_RS03900 -0.9 -2.2 molecular chaperone DnaK compare
EX31_RS07520 -0.9 -1.6 ornithine cyclodeaminase compare
EX31_RS09270 -0.9 -2.0 DUF1611 domain-containing protein compare
EX31_RS21785 -0.9 -4.9 ATP-dependent RNA helicase SrmB compare
EX31_RS01905 -0.9 -1.8 hypothetical protein compare
EX31_RS24410 -0.9 -4.1 23S rRNA accumulation protein YceD compare
EX31_RS09895 -0.9 -1.5 type I DNA topoisomerase compare
EX31_RS02410 -0.9 -1.4 multidrug DMT transporter compare
EX31_RS02625 -0.9 -1.3 hypothetical protein compare
EX31_RS17655 -0.9 -3.0 hypothetical protein compare
EX31_RS06140 -0.9 -5.4 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
EX31_RS02690 -0.9 -2.8 pyrroline-5-carboxylate reductase compare
EX31_RS09585 -0.9 -1.4 flagellar biosynthetic protein FliO compare
EX31_RS08515 -0.8 -6.4 lipoprotein NlpI compare
EX31_RS13275 -0.8 -5.1 diaminopimelate decarboxylase compare
EX31_RS03685 -0.8 -5.2 3-isopropylmalate dehydrogenase compare
EX31_RS18120 -0.8 -1.6 aliphatic sulfonates ABC transporter ATP-binding protein compare
EX31_RS15160 -0.8 -2.9 DUF484 domain-containing protein compare
EX31_RS20185 -0.8 -3.3 phosphoenolpyruvate-protein phosphotransferase PtsI compare
EX31_RS03890 -0.8 -2.4 Na+/H+ antiporter NhaA compare
EX31_RS02175 -0.8 -2.5 peptide-methionine (S)-S-oxide reductase MsrA compare
EX31_RS03215 -0.8 -2.1 Fe(3+)-hydroxamate ABC transporter substrate-binding protein FhuD compare
EX31_RS25450 -0.8 -2.4 helix-turn-helix domain-containing protein compare
EX31_RS15870 -0.8 -2.4 glutamate--ammonia ligase compare
EX31_RS16855 -0.8 -5.1 phosphoribosylamine--glycine ligase compare
EX31_RS06600 -0.8 -2.3 electron transport complex subunit RsxG compare
EX31_RS25040 -0.8 -1.6 pyrroloquinoline quinone precursor peptide PqqA compare
EX31_RS02145 -0.8 -1.9 methionine synthase compare
EX31_RS09165 -0.8 -1.5 FadR family transcriptional regulator compare
EX31_RS00050 -0.8 -2.5 ABC transporter ATP-binding protein compare
EX31_RS10045 -0.8 -2.6 ABC transporter ATP-binding protein compare
EX31_RS03210 -0.8 -2.6 Fe(3+)-hydroxamate ABC transporter permease FhuB compare
EX31_RS09470 -0.8 -1.8 flagella biosynthesis regulatory protein FliT compare
EX31_RS10580 -0.8 -1.6 septum site-determining protein MinC compare
EX31_RS22315 -0.8 -2.1 P-II family nitrogen regulator compare
EX31_RS06000 -0.8 -2.2 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
EX31_RS24385 -0.8 -2.1 dihydroorotase compare
EX31_RS12415 -0.8 -3.0 LPS export ABC transporter periplasmic protein LptC compare
EX31_RS18870 -0.8 -2.1 heavy metal response regulator transcription factor compare
EX31_RS06820 -0.8 -2.5 amino acid ABC transporter permease compare
EX31_RS17665 -0.8 -3.6 MFS transporter compare
EX31_RS24320 -0.8 -1.9 DoxX family protein compare
EX31_RS16290 -0.8 -1.8 Arc family DNA-binding protein compare
EX31_RS26080 -0.8 -2.0 hypothetical protein compare
EX31_RS11540 -0.8 -2.1 dCTP deaminase compare
EX31_RS24140 -0.8 -0.7 DUF2594 family protein compare
EX31_RS06520 -0.8 -3.7 two-component system response regulator RstA compare
EX31_RS13495 -0.8 -2.8 FAD assembly factor SdhE compare
EX31_RS07415 -0.8 -0.7 bifunctional diguanylate cyclase/phosphodiesterase compare
EX31_RS18095 -0.8 -3.3 quinone-dependent dihydroorotate dehydrogenase compare
EX31_RS20450 -0.8 -3.2 IMP dehydrogenase compare
EX31_RS20000 -0.8 -1.8 nuclear transport factor 2 family protein compare
EX31_RS07035 -0.7 -2.4 guanine deaminase compare
EX31_RS09940 -0.7 -3.2 23S rRNA pseudouridine(2605) synthase RluB compare
EX31_RS08650 -0.7 -2.0 transcriptional regulator ArgR compare
EX31_RS03690 -0.7 -4.8 3-isopropylmalate dehydratase large subunit compare


Specific Phenotypes

None in this experiment

For Rahnella sp. WP5 in carbon source experiments

For carbon source NLDM_metabolites across organisms