Experiment set2IT092 for Sphingomonas koreensis DSMZ 15582

Compare to:

LB with Tetracycline hydrochloride 0.0005 mg/ml

200 most detrimental genes:

  gene name fitness t score description  
Ga0059261_1050 +0.9 2.6 hypothetical protein compare
Ga0059261_3280 +0.7 1.3 Uncharacterized conserved protein compare
Ga0059261_0411 +0.7 2.3 Uncharacterized conserved protein compare
Ga0059261_1831 +0.7 1.7 hypothetical protein compare
Ga0059261_0344 +0.7 2.5 Molecular chaperone (small heat shock protein) compare
Ga0059261_3939 +0.6 3.5 transcriptional regulator, TetR family compare
Ga0059261_0850 +0.6 1.4 hypothetical protein compare
Ga0059261_3938 +0.6 4.5 Imidazolonepropionase and related amidohydrolases compare
Ga0059261_2413 +0.6 1.8 hypothetical protein compare
Ga0059261_3562 +0.6 3.0 Glycosyltransferase compare
Ga0059261_0659 +0.6 2.1 transcriptional regulator, HxlR family compare
Ga0059261_2020 +0.6 4.2 Glycosyltransferase compare
Ga0059261_3440 +0.5 1.2 hypothetical protein compare
Ga0059261_3238 +0.5 1.5 hypothetical protein compare
Ga0059261_4007 +0.5 1.3 Transcriptional regulators compare
Ga0059261_3569 +0.5 1.5 chaperone protein DnaJ compare
Ga0059261_3799 +0.5 1.9 hypothetical protein compare
Ga0059261_0060 +0.5 1.4 Uncharacterized conserved protein compare
Ga0059261_3937 +0.5 4.2 Imidazolonepropionase and related amidohydrolases compare
Ga0059261_3783 +0.5 2.1 hypothetical protein compare
Ga0059261_3659 +0.5 2.5 PqqD family protein, HPr-rel-A system compare
Ga0059261_0340 +0.5 2.4 Bacterial protein of unknown function (DUF937) compare
Ga0059261_0059 +0.4 1.3 Stress-induced morphogen (activity unknown) compare
Ga0059261_4193 +0.4 3.9 hypothetical protein compare
Ga0059261_3321 +0.4 2.0 pyrroline-5-carboxylate reductase compare
Ga0059261_3948 +0.4 1.8 type II secretion system protein H compare
Ga0059261_2840 +0.4 2.2 Enoyl-CoA hydratase/carnithine racemase compare
Ga0059261_1396 +0.4 2.0 EF-hand domain pair compare
Ga0059261_0305 +0.4 1.7 bacterioferritin compare
Ga0059261_1549 +0.4 1.5 hypothetical protein compare
Ga0059261_1381 +0.4 2.0 Membrane protease subunits, stomatin/prohibitin homologs compare
Ga0059261_0448 +0.4 1.2 hypothetical protein compare
Ga0059261_1519 +0.4 1.6 NUDIX domain compare
Ga0059261_2680 +0.4 0.5 hypothetical protein compare
Ga0059261_3605 +0.4 1.6 tRNA compare
Ga0059261_3327 +0.4 2.0 hypothetical protein compare
Ga0059261_3784 +0.4 3.4 DNA mismatch repair protein MutS compare
Ga0059261_2237 +0.4 2.2 Protein of unknown function (DUF1674) compare
Ga0059261_0304 +0.4 1.1 Bacterioferritin-associated ferredoxin compare
Ga0059261_1546 +0.4 2.7 MerC mercury resistance protein compare
Ga0059261_4051 +0.4 1.9 Transcriptional regulator compare
Ga0059261_2993 +0.4 1.7 hypothetical protein compare
Ga0059261_3872 +0.4 1.8 Outer membrane protein compare
Ga0059261_4194 +0.4 2.9 Type II secretory pathway, component ExeA (predicted ATPase) compare
Ga0059261_4013 +0.4 1.3 hypothetical protein compare
Ga0059261_1097 +0.4 2.0 Flagellar basal body protein compare
Ga0059261_2097 +0.4 1.9 Rod binding protein compare
Ga0059261_2589 +0.4 1.6 Protein of unknown function (DUF2493) compare
Ga0059261_3364 +0.4 3.4 PEP-CTERM/exosortase A-associated glycosyltransferase, Daro_2409 family compare
Ga0059261_0451 +0.4 1.0 hypothetical protein compare
Ga0059261_2365 +0.4 1.3 Mu-like prophage FluMu protein gp41 compare
Ga0059261_2478 +0.4 1.9 Uncharacterized conserved protein compare
Ga0059261_0749 +0.4 2.0 Membrane transporters of cations and cationic drugs compare
Ga0059261_1724 +0.4 1.4 hypothetical protein compare
Ga0059261_0599 +0.4 2.3 glucose-1-phosphate cytidylyltransferase compare
Ga0059261_1380 +0.4 3.0 Membrane protease subunits, stomatin/prohibitin homologs compare
Ga0059261_1538 +0.4 1.5 Predicted transcriptional regulators compare
Ga0059261_1763 +0.4 1.9 hypothetical protein compare
Ga0059261_0657 +0.4 0.7 Uncharacterized protein conserved in bacteria compare
Ga0059261_2978 +0.4 1.4 Transcriptional regulators compare
Ga0059261_2913 +0.4 0.8 Type IV secretory pathway, VirB2 components (pilins) compare
Ga0059261_1739 +0.4 2.0 Conjugal transfer protein TraD compare
Ga0059261_1490 +0.4 3.1 Glycosyltransferase compare
Ga0059261_3362 +0.4 3.2 Lipid A core - O-antigen ligase and related enzymes compare
Ga0059261_4196 +0.4 2.8 FemAB-related protein, PEP-CTERM system-associated compare
Ga0059261_0155 +0.4 2.8 peroxiredoxin compare
Ga0059261_3308 +0.4 1.3 Uncharacterized conserved protein compare
Ga0059261_0853 +0.4 1.6 peroxiredoxin, Ohr subfamily compare
Ga0059261_3020 +0.3 1.7 Copper binding periplasmic protein CusF compare
Ga0059261_1115 +0.3 0.8 Chemotaxis protein; stimulates methylation of MCP proteins compare
Ga0059261_3693 +0.3 2.6 Putative arginyl-tRNA:protein arginylyltransferase compare
Ga0059261_0239 +0.3 0.8 tryptophan synthase, alpha chain (EC 4.2.1.20) compare
Ga0059261_0257 +0.3 1.7 hypothetical protein compare
Ga0059261_1914 +0.3 1.1 Acetyltransferases compare
Ga0059261_1059 +0.3 2.2 ABC-type uncharacterized transport system, ATPase component compare
Ga0059261_1043 +0.3 1.2 Uncharacterized protein conserved in bacteria compare
Ga0059261_3785 +0.3 1.8 hypothetical protein compare
Ga0059261_2713 +0.3 0.6 hypothetical protein compare
Ga0059261_2216 +0.3 2.0 pyridoxal phosphate enzyme, YggS family compare
Ga0059261_1195 +0.3 1.7 Co/Zn/Cd efflux system component compare
Ga0059261_2019 +0.3 1.8 Uncharacterized protein conserved in bacteria compare
Ga0059261_3661 +0.3 2.3 Uncharacterised nucleotidyltransferase compare
Ga0059261_0911 +0.3 1.2 Domain of unknown function (DUF3597) compare
Ga0059261_1929 +0.3 1.7 Putative transmembrane protein (Alph_Pro_TM) compare
Ga0059261_2471 +0.3 0.9 hypothetical protein compare
Ga0059261_2987 +0.3 0.6 hypothetical protein compare
Ga0059261_0627 +0.3 0.6 cobalamin-5'-phosphate synthase (EC 2.7.8.26) compare
Ga0059261_3658 +0.3 2.7 hypothetical protein compare
Ga0059261_1569 +0.3 1.2 Response regulator receiver domain compare
Ga0059261_3703 +0.3 1.5 Uncharacterized conserved protein compare
Ga0059261_3400 +0.3 2.6 diguanylate cyclase (GGDEF) domain compare
Ga0059261_0532 +0.3 2.1 RNA polymerase sigma factor, sigma-70 family compare
Ga0059261_2992 +0.3 1.4 Biopolymer transport protein compare
Ga0059261_1545 +0.3 1.5 Fe2+/Zn2+ uptake regulation proteins compare
Ga0059261_1595 +0.3 2.7 Membrane protein involved in the export of O-antigen and teichoic acid compare
Ga0059261_0064 +0.3 1.8 Domain of unknown function (DUF4112) compare
Ga0059261_0660 +0.3 1.7 Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) compare
Ga0059261_1950 +0.3 1.8 hypothetical protein compare
Ga0059261_0982 +0.3 1.8 acetyl-CoA acetyltransferases compare
Ga0059261_3660 +0.3 2.3 HprK-related kinase A compare
Ga0059261_0612 +0.3 1.3 RNA polymerase sigma factor, sigma-70 family compare
Ga0059261_2239 +0.3 1.9 tRNA and rRNA cytosine-C5-methylases compare
Ga0059261_3871 +0.3 0.7 formate dehydrogenase family accessory protein FdhD compare
Ga0059261_2749 +0.3 2.1 transcriptional regulator, TetR family compare
Ga0059261_0464 +0.3 0.9 hypothetical protein compare
Ga0059261_1361 +0.3 2.4 sugar transferase, PEP-CTERM system associated/exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase compare
Ga0059261_2018 +0.3 2.0 hypothetical protein compare
Ga0059261_0796 +0.3 0.4 Uncharacterized conserved protein, contains double-stranded beta-helix domain compare
Ga0059261_0209 +0.3 2.4 His Kinase A (phospho-acceptor) domain/Response regulator receiver domain/Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase compare
Ga0059261_3664 +0.3 1.4 hypothetical protein compare
Ga0059261_0191 +0.3 1.7 hypothetical protein compare
Ga0059261_1006 +0.3 1.6 NAD-dependent aldehyde dehydrogenases compare
Ga0059261_1265 +0.3 0.7 hypothetical protein compare
Ga0059261_4190 +0.3 2.0 Periplasmic protein involved in polysaccharide export compare
Ga0059261_2928 +0.3 1.5 oxygen-dependent methionine synthase, putative oxygenase component MesX (from data) compare
Ga0059261_4107 +0.3 1.8 hypothetical protein compare
Ga0059261_1263 +0.3 1.3 hypothetical protein compare
Ga0059261_4192 +0.3 1.1 ATPases involved in chromosome partitioning compare
Ga0059261_3839 +0.3 1.2 hypothetical protein compare
Ga0059261_2613 +0.3 1.7 AraC-type DNA-binding domain-containing proteins compare
Ga0059261_4195 +0.3 2.0 polysaccharide deacetylase family protein, PEP-CTERM locus subfamily compare
Ga0059261_0156 +0.3 1.7 alkyl hydroperoxide reductase subunit F compare
Ga0059261_2746 +0.3 1.5 Predicted sugar nucleotidyltransferases compare
Ga0059261_2466 +0.3 2.1 DnaJ domain/DnaJ C terminal domain compare
Ga0059261_0745 +0.3 1.3 Uncharacterized membrane protein, required for colicin V production compare
Ga0059261_3546 +0.3 1.8 hypothetical protein compare
Ga0059261_3306 +0.3 2.1 hypothetical protein compare
Ga0059261_4150 +0.3 2.0 Predicted permeases compare
Ga0059261_0633 +0.3 0.9 Acetyltransferases, including N-acetylases of ribosomal proteins compare
Ga0059261_3752 +0.3 1.1 Uncharacterized protein conserved in bacteria compare
Ga0059261_2682 +0.3 1.5 Response regulator receiver domain compare
Ga0059261_3581 +0.3 1.7 Alpha/beta hydrolase family compare
Ga0059261_3545 +0.3 0.5 hypothetical protein compare
Ga0059261_2063 +0.3 0.9 Flagellar biosynthesis protein, FliO compare
Ga0059261_3685 +0.3 1.6 Enoyl-CoA hydratase/carnithine racemase compare
Ga0059261_0618 +0.3 1.8 Signal transduction histidine kinase regulating C4-dicarboxylate transport system compare
Ga0059261_2745 +0.3 2.2 Myo-inositol-1-phosphate synthase compare
Ga0059261_3061 +0.3 1.9 Type IV secretory pathway, protease TraF compare
Ga0059261_3761 +0.3 1.8 hypothetical protein compare
Ga0059261_1064 +0.3 1.1 Uncharacterized conserved protein compare
Ga0059261_2094 +0.3 1.8 flagellar basal-body rod protein FlgG, Gram-negative bacteria compare
Ga0059261_1860 +0.2 0.4 Transposase compare
Ga0059261_4169 +0.2 1.1 Kef-type K+ transport system, predicted NAD-binding component compare
Ga0059261_3886 +0.2 1.5 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Ga0059261_3757 +0.2 1.8 transcriptional regulator, LysR family compare
Ga0059261_2856 +0.2 1.4 Acyl-CoA dehydrogenases compare
Ga0059261_0251 +0.2 2.0 hypothetical protein compare
Ga0059261_4185 +0.2 0.5 hypothetical protein compare
Ga0059261_3230 +0.2 1.2 hypothetical protein compare
Ga0059261_1349 +0.2 0.9 hypothetical protein compare
Ga0059261_1497 +0.2 1.4 required for sulfate utilization, putative electron source for sulfite reductase CysI (from data) compare
Ga0059261_2708 +0.2 1.2 hypothetical protein compare
Ga0059261_0935 +0.2 1.1 Uncharacterized conserved protein compare
Ga0059261_1550 +0.2 2.0 hypothetical protein compare
Ga0059261_2209 +0.2 1.6 hypothetical protein compare
Ga0059261_0268 +0.2 1.0 Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily compare
Ga0059261_3419 +0.2 1.5 hypothetical protein compare
Ga0059261_0889 +0.2 0.7 Cold shock proteins compare
Ga0059261_1894 +0.2 1.3 D-xylose 1-dehydrogenase (EC 1.1.1.175) (from data) compare
Ga0059261_1743 +0.2 0.7 hypothetical protein compare
Ga0059261_3432 +0.2 1.1 leucyl/phenylalanyl-tRNA--protein transferase compare
Ga0059261_2049 +0.2 1.6 argininosuccinate lyase compare
Ga0059261_3083 +0.2 1.1 hypothetical protein compare
Ga0059261_1904 +0.2 0.6 Asparaginase compare
Ga0059261_4029 +0.2 1.5 hypothetical protein compare
Ga0059261_0473 +0.2 1.2 Predicted Fe-S protein compare
Ga0059261_1988 +0.2 1.5 hypothetical protein compare
Ga0059261_0812 +0.2 1.1 Short-chain alcohol dehydrogenase of unknown specificity compare
Ga0059261_1624 +0.2 1.5 2-keto-3-deoxy-galactonokinase compare
Ga0059261_2837 +0.2 1.5 Cupin domain compare
Ga0059261_2297 +0.2 1.6 Predicted integral membrane protein compare
Ga0059261_1254 +0.2 1.3 Predicted periplasmic protein compare
Ga0059261_2436 +0.2 1.1 hypothetical protein compare
Ga0059261_0548 +0.2 1.4 Gluconate 2-dehydrogenase subunit 3 compare
Ga0059261_1868 +0.2 0.7 ABC-type uncharacterized transport system, auxiliary component compare
Ga0059261_2861 +0.2 1.5 Enoyl-CoA hydratase/carnithine racemase compare
Ga0059261_0525 +0.2 0.8 Transcriptional regulator compare
Ga0059261_2895 +0.2 1.4 Type IV secretory pathway, protease TraF compare
Ga0059261_1535 +0.2 1.5 Predicted transcriptional regulators compare
Ga0059261_0814 +0.2 1.3 hypothetical protein compare
Ga0059261_3287 +0.2 1.8 Topoisomerase IB compare
Ga0059261_3566 +0.2 0.9 hypothetical protein compare
Ga0059261_1182 +0.2 1.6 Predicted transcriptional regulators compare
Ga0059261_2747 +0.2 1.5 Cupin domain compare
Ga0059261_0199 +0.2 1.2 hypothetical protein compare
Ga0059261_3684 +0.2 1.3 hypothetical protein compare
Ga0059261_0130 +0.2 1.6 Predicted lactoylglutathione lyase compare
Ga0059261_0642 +0.2 1.2 Protein of unknown function (DUF3011) compare
Ga0059261_2120 +0.2 1.0 hypothetical protein compare
Ga0059261_1774 +0.2 0.4 hypothetical protein compare
Ga0059261_1461 +0.2 1.1 Metal-dependent hydrolase compare
Ga0059261_2983 +0.2 1.4 Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases compare
Ga0059261_0828 +0.2 1.6 Peptidase family S41 compare
Ga0059261_4083 +0.2 0.8 two component transcriptional regulator, LuxR family compare
Ga0059261_3050 +0.2 1.5 N-acyl-L-homoserine lactone synthetase compare
Ga0059261_0898 +0.2 0.8 Membrane protein implicated in regulation of membrane protease activity compare
Ga0059261_3882 +0.2 0.9 dimethyladenosine transferase (EC 2.1.1.-) compare
Ga0059261_1145 +0.2 0.5 flagella basal body P-ring formation protein FlgA compare
Ga0059261_1021 +0.2 0.8 hypothetical protein compare
Ga0059261_3316 +0.2 1.2 hypothetical protein compare


Specific Phenotypes

For 1 genes in this experiment

For stress Tetracycline hydrochloride in Sphingomonas koreensis DSMZ 15582

For stress Tetracycline hydrochloride across organisms