Experiment set2IT091 for Xanthomonas campestris pv. campestris strain 8004

Compare to:

MOKA

200 most important genes:

  gene name fitness t score description  
Xcc-8004.5192.1 -4.2 -14.8 hypothetical protein compare
Xcc-8004.271.1 -4.2 -4.9 Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94) compare
Xcc-8004.5193.1 -3.5 -19.8 Outer membrane protein assembly factor YaeT precursor compare
Xcc-8004.4526.1 -3.0 -11.4 Fumarylacetoacetate hydrolase family protein compare
Xcc-8004.3324.1 -2.4 -4.9 Carbonic anhydrase (EC 4.2.1.1) compare
Xcc-8004.2922.1 -2.3 -3.7 Methylglutaconyl-CoA hydratase (EC 4.2.1.18) compare
Xcc-8004.337.1 -1.9 -4.2 ATPase, AFG1 family compare
Xcc-8004.1434.1 -1.7 -1.9 FIG000859: hypothetical protein YebC compare
Xcc-8004.3054.1 -1.6 -2.7 Poly(A) polymerase (EC 2.7.7.19) compare
Xcc-8004.2182.1 -1.6 -10.1 NAD-specific glutamate dehydrogenase (EC 1.4.1.2), large form compare
Xcc-8004.3698.1 -1.6 -2.5 hypothetical protein compare
Xcc-8004.4948.1 -1.4 -3.0 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain compare
Xcc-8004.3479.1 -1.3 -2.3 aklaviketone reductase compare
Xcc-8004.2259.1 -1.3 -4.1 PhbF compare
Xcc-8004.2921.1 -1.3 -2.7 ferrous iron transport protein compare
Xcc-8004.3979.1 -1.3 -5.5 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79) compare
Xcc-8004.1436.1 -1.3 -2.1 Holliday junction DNA helicase RuvA compare
Xcc-8004.3576.1 -1.2 -6.4 Intracellular PHB depolymerase (EC 3.1.1.-) compare
Xcc-8004.3875.1 -1.2 -2.1 FIG01212144: hypothetical protein compare
Xcc-8004.1226.1 -1.2 -2.3 FIG01210021: hypothetical protein compare
Xcc-8004.2217.1 -1.2 -3.6 FIG01209779: hypothetical protein compare
Xcc-8004.3072.1 -1.2 -2.8 hypothetical protein compare
Xcc-8004.623.1 -1.2 -2.6 Phosphoserine phosphatase compare
Xcc-8004.2422.1 -1.2 -2.3 Putative stress-responsive transcriptional regulator compare
Xcc-8004.4112.1 -1.1 -3.4 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
Xcc-8004.1108.1 -1.1 -1.7 Uncharacterized protein, similar to the N-terminal domain of Lon protease compare
Xcc-8004.4884.1 -1.1 -2.3 Orotate phosphoribosyltransferase (EC 2.4.2.10) compare
Xcc-8004.270.1 -1.1 -3.8 Protein export cytoplasm chaperone protein (SecB, maintains protein to be exported in unfolded state) compare
Xcc-8004.3980.1 -1.1 -4.3 2-methylcitrate synthase (EC 2.3.3.5) compare
Xcc-8004.659.1 -1.1 -2.6 IMP cyclohydrolase (EC 3.5.4.10) / Phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3) compare
Xcc-8004.3742.1 -1.1 -2.1 Type III effector compare
Xcc-8004.3394.1 -1.0 -3.0 hypothetical protein compare
Xcc-8004.4633.1 -1.0 -2.0 FIG01210488: hypothetical protein compare
Xcc-8004.4296.1 -1.0 -2.6 Hemin transport protein compare
Xcc-8004.165.1 -1.0 -2.0 hypothetical protein compare
Xcc-8004.1437.1 -1.0 -4.0 Kup system potassium uptake protein compare
Xcc-8004.361.1 -1.0 -3.3 FIG023937: hypothetical protein in ureide degradation cluster compare
Xcc-8004.1359.1 -1.0 -3.7 NAD synthetase (EC 6.3.1.5) / Glutamine amidotransferase chain of NAD synthetase compare
Xcc-8004.3834.1 -1.0 -3.1 Pathogenicity-related protein compare
Xcc-8004.1400.1 -1.0 -2.5 Cobalamin synthase (EC 2.7.8.26) compare
Xcc-8004.1858.1 -1.0 -1.1 FIG01211170: hypothetical protein compare
Xcc-8004.726.1 -0.9 -1.3 Putative preQ0 transporter compare
Xcc-8004.3939.1 -0.9 -2.4 Putative DNA-binding protein in cluster with Type I restriction-modification system compare
Xcc-8004.2579.1 -0.9 -2.6 Transcriptional regulator in PFGI-1-like cluster compare
Xcc-8004.500.1 -0.9 -1.4 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100) compare
Xcc-8004.1137.1 -0.9 -2.1 FIG006231: RNA-binding protein compare
Xcc-8004.574.1 -0.9 -4.6 Di-/tripeptide transporter compare
Xcc-8004.787.1 -0.9 -1.3 Rrf2 family transcriptional regulator, group III compare
Xcc-8004.5352.1 -0.9 -1.9 Exodeoxyribonuclease V alpha chain (EC 3.1.11.5) compare
Xcc-8004.4241.1 -0.9 -1.7 cytidine and deoxycytidylate deaminase family protein compare
Xcc-8004.279.1 -0.8 -2.3 FIG01210420: hypothetical protein compare
Xcc-8004.1839.1 -0.8 -1.6 FIG01210863: hypothetical protein compare
Xcc-8004.2839.1 -0.8 -1.7 Signal transduction histidine kinase CheA (EC 2.7.3.-) compare
Xcc-8004.3108.1 -0.8 -2.4 Regulatory protein RecX compare
Xcc-8004.3346.1 -0.8 -2.3 hypothetical protein compare
Xcc-8004.3976.1 -0.8 -3.5 2-methylaconitate cis-trans isomerase compare
Xcc-8004.3244.1 -0.8 -2.3 DNA repair protein RadC compare
Xcc-8004.4019.1 -0.8 -3.1 Molybdenum cofactor biosynthesis protein MoaD compare
Xcc-8004.130.1 -0.8 -3.6 hypothetical protein compare
Xcc-8004.111.1 -0.8 -1.7 FIG01211861: hypothetical protein compare
Xcc-8004.3815.1 -0.8 -2.3 Cytochrome O ubiquinol oxidase subunit III (EC 1.10.3.-) compare
Xcc-8004.703.1 -0.8 -1.4 hypothetical protein compare
Xcc-8004.4301.1 -0.7 -2.9 Nucleoside permease NupC compare
Xcc-8004.689.1 -0.7 -1.4 ATP-dependent DNA helicase recG (EC 3.6.1.-) compare
Xcc-8004.3647.1 -0.7 -2.4 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9) compare
Xcc-8004.3726.1 -0.7 -1.4 Type III secretion bridge between inner and outermembrane lipoprotein (YscJ,HrcJ,EscJ, PscJ) compare
Xcc-8004.3686.1 -0.7 -3.7 3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4) compare
Xcc-8004.1567.1 -0.7 -3.9 Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10) compare
Xcc-8004.4510.1 -0.7 -1.3 ATP binding component of ABC-transporter compare
Xcc-8004.178.1 -0.7 -1.0 hypothetical protein compare
Xcc-8004.2923.1 -0.7 -4.2 Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) compare
Xcc-8004.5201.1 -0.7 -2.2 FIG01211164: hypothetical protein compare
Xcc-8004.3445.1 -0.7 -2.2 hypothetical protein compare
Xcc-8004.5168.1 -0.7 -1.0 hypothetical protein compare
Xcc-8004.5324.1 -0.7 -2.0 Mobile element protein compare
Xcc-8004.1058.1 -0.7 -1.5 acetolactate synthase, regulatory subunit (EC 2.2.1.6) (from data) compare
Xcc-8004.1003.1 -0.7 -1.6 FIG027190: Putative transmembrane protein compare
Xcc-8004.2561.1 -0.7 -3.8 FIG01213638: hypothetical protein compare
Xcc-8004.127.1 -0.7 -1.2 Fructose-1,6-bisphosphatase, type I (EC 3.1.3.11) compare
Xcc-8004.1771.1 -0.7 -1.6 Positive regulator of CheA protein activity (CheW) compare
Xcc-8004.2559.1 -0.7 -1.6 hypothetical protein compare
Xcc-8004.3130.1 -0.7 -3.7 Protein-L-isoaspartate O-methyltransferase (EC 2.1.1.77) compare
Xcc-8004.3757.1 -0.7 -2.2 Mobile element protein compare
Xcc-8004.4836.1 -0.7 -3.1 Heme A synthase, cytochrome oxidase biogenesis protein Cox15-CtaA compare
Xcc-8004.3120.1 -0.6 -1.3 RNA-binding protein Hfq compare
Xcc-8004.2833.1 -0.6 -2.1 Chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY compare
Xcc-8004.4806.1 -0.6 -1.3 FIG01211609: hypothetical protein compare
Xcc-8004.3816.1 -0.6 -3.6 Cytochrome O ubiquinol oxidase subunit I (EC 1.10.3.-) compare
Xcc-8004.4871.1 -0.6 -1.3 Phage tail completion protein compare
Xcc-8004.5367.1 -0.6 -3.3 Uncharacterized ABC transporter, auxiliary component YrbC compare
Xcc-8004.3253.1 -0.6 -2.0 IncQ plasmid conjugative transfer protein TraG compare
Xcc-8004.4200.1 -0.6 -1.5 probably aromatic ring hydroxylating enzyme, evidenced by COGnitor; PaaD-like protein (DUF59) involved in Fe-S cluster assembly compare
Xcc-8004.4170.1 -0.6 -0.9 LSU ribosomal protein L25p compare
Xcc-8004.2924.1 -0.6 -2.9 Short-chain dehydrogenase/reductase SDR compare
Xcc-8004.3620.1 -0.6 -2.4 FIG01210133: hypothetical protein compare
Xcc-8004.3426.1 -0.6 -2.9 Chaperone protein DnaJ compare
Xcc-8004.1822.1 -0.6 -1.3 Transcriptional regulator, MarR family compare
Xcc-8004.4416.1 -0.6 -3.1 hypothetical protein compare
Xcc-8004.171.1 -0.6 -1.0 hypothetical protein compare
Xcc-8004.5280.1 -0.6 -1.3 hypothetical protein compare
Xcc-8004.1329.1 -0.6 -2.0 Virulence regulator compare
Xcc-8004.4329.1 -0.6 -1.2 D-galactose 1-dehydrogenase (EC 1.1.1.48) compare
Xcc-8004.5114.1 -0.6 -3.5 ATP-dependent DNA helicase UvrD/PcrA compare
Xcc-8004.4672.1 -0.6 -1.9 hypothetical protein compare
Xcc-8004.3292.1 -0.6 -2.5 FIG01210333: hypothetical protein compare
Xcc-8004.3374.1 -0.6 -2.0 hypothetical protein compare
Xcc-8004.4001.1 -0.6 -1.6 FIG146278: Maf/YceF/YhdE family protein compare
Xcc-8004.3665.1 -0.6 -1.4 COG3380: Amine oxidase, flavin-containing compare
Xcc-8004.1521.1 -0.6 -1.3 FIG01209895: hypothetical protein compare
Xcc-8004.3817.1 -0.6 -2.8 Cytochrome O ubiquinol oxidase subunit II (EC 1.10.3.-) compare
Xcc-8004.4732.1 -0.6 -1.1 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-) compare
Xcc-8004.1224.1 -0.6 -2.9 Radical SAM family enzyme, similar to coproporphyrinogen III oxidase, oxygen-independent, clustered with nucleoside-triphosphatase RdgB compare
Xcc-8004.1280.1 -0.6 -1.7 Ferredoxin, 2Fe-2S compare
Xcc-8004.983.1 -0.6 -2.1 Glutathione-dependent formaldehyde-activating enzyme (EC 4.4.1.22) compare
Xcc-8004.2168.1 -0.6 -2.0 tRNA-guanine transglycosylase (EC 2.4.2.29) compare
Xcc-8004.3676.1 -0.6 -1.7 Translation elongation factor LepA compare
Xcc-8004.4497.1 -0.6 -2.3 Mobile element protein compare
Xcc-8004.305.1 -0.6 -2.5 hypothetical protein compare
Xcc-8004.4945.1 -0.6 -0.8 FIG01210349: hypothetical protein compare
Xcc-8004.3395.1 -0.6 -1.2 Transcriptional regulator, GntR family compare
Xcc-8004.1428.1 -0.6 -2.6 FIG01211346: hypothetical protein compare
Xcc-8004.589.1 -0.6 -1.0 hypothetical protein compare
Xcc-8004.2337.1 -0.6 -2.0 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Xcc-8004.955.1 -0.6 -1.9 Predicted transcriptional regulator of N-Acetylglucosamine utilization, LacI family compare
Xcc-8004.1619.1 -0.6 -1.9 PspA/IM30 family protein compare
Xcc-8004.4671.1 -0.6 -2.0 FIG01212254: hypothetical protein compare
Xcc-8004.1228.1 -0.6 -3.1 Xaa-Pro dipeptidase PepQ (EC 3.4.13.9) compare
Xcc-8004.410.1 -0.6 -1.3 putative; ORF located using Glimmer/Genemark compare
Xcc-8004.4441.1 -0.5 -1.6 Tyrosine recombinase XerD compare
Xcc-8004.2895.1 -0.5 -2.1 FIG01210907: hypothetical protein compare
Xcc-8004.4247.1 -0.5 -1.9 Transcriptional regulator, MarR family compare
Xcc-8004.4620.1 -0.5 -3.5 Alanine racemase (EC 5.1.1.1) compare
Xcc-8004.2219.1 -0.5 -2.2 Magnesium and cobalt efflux protein CorC compare
Xcc-8004.4929.1 -0.5 -2.3 hypothetical protein compare
Xcc-8004.3630.1 -0.5 -2.0 FKBP-type peptidyl-prolyl cis-trans isomerase SlyD (EC 5.2.1.8) compare
Xcc-8004.1158.1 -0.5 -1.0 Molybdenum transport system permease protein ModB (TC 3.A.1.8.1) compare
Xcc-8004.1710.1 -0.5 -3.0 Pyrroline-5-carboxylate reductase (EC 1.5.1.2) compare
Xcc-8004.3310.1 -0.5 -2.0 Chromosome partition protein smc compare
Xcc-8004.53.1 -0.5 -2.1 hypothetical protein compare
Xcc-8004.3666.1 -0.5 -1.9 2-hydroxychromene-2-carboxylate isomerase/DsbA-like thioredoxin domain compare
Xcc-8004.3498.1 -0.5 -1.1 hypothetical protein compare
Xcc-8004.4233.1 -0.5 -1.2 two-component system sensor protein compare
Xcc-8004.5133.1 -0.5 -0.7 FIG01212313: hypothetical protein compare
Xcc-8004.3029.1 -0.5 -3.7 Aldehyde dehydrogenase B (EC 1.2.1.22) compare
Xcc-8004.4373.1 -0.5 -1.5 LppC putative lipoprotein compare
Xcc-8004.2357.1 -0.5 -1.7 Segregation and condensation protein B compare
Xcc-8004.1615.1 -0.5 -1.0 3-dehydroquinate synthase (EC 4.2.3.4) compare
Xcc-8004.4523.1 -0.5 -1.4 Type II secretion system protein-like protein compare
Xcc-8004.4596.1 -0.5 -3.3 hypothetical protein compare
Xcc-8004.2199.1 -0.5 -1.3 Hemerythrin-like protein PA1673 compare
Xcc-8004.4705.1 -0.5 -2.2 ABC transporter ATP-binding protein compare
Xcc-8004.1468.1 -0.5 -1.9 FIG01210319: hypothetical protein compare
Xcc-8004.4046.1 -0.5 -3.6 ATP-dependent protease La (EC 3.4.21.53) Type I compare
Xcc-8004.3982.1 -0.5 -2.3 Propionate catabolism operon regulatory protein PrpR compare
Xcc-8004.1909.1 -0.5 -2.4 FIG01212339: hypothetical protein compare
Xcc-8004.5398.1 -0.5 -2.2 Glycerophosphoryl diester phosphodiesterase (EC 3.1.4.46) compare
Xcc-8004.494.1 -0.5 -2.5 Threonine dehydratase, catabolic (EC 4.3.1.19) compare
Xcc-8004.2105.1 -0.5 -2.7 FIG01210123: hypothetical protein compare
Xcc-8004.973.1 -0.5 -2.2 Osmosensitive K+ channel histidine kinase KdpD (EC 2.7.3.-) compare
Xcc-8004.2627.1 -0.5 -1.2 Phi-Lf prophage-derived helix-destabilizing protein compare
Xcc-8004.2230.1 -0.5 -2.0 ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit compare
Xcc-8004.1223.1 -0.5 -0.6 Nucleoside 5-triphosphatase RdgB (dHAPTP, dITP, XTP-specific) (EC 3.6.1.15) compare
Xcc-8004.3159.1 -0.5 -2.2 Luciferase-like compare
Xcc-8004.1660.1 -0.5 -0.6 PTS system nitrogen-specific IIA component, PtsN compare
Xcc-8004.5020.1 -0.5 -2.4 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) compare
Xcc-8004.2704.1 -0.5 -2.0 Glucose-1-phosphate cytidylyltransferase (EC 2.7.7.33) compare
Xcc-8004.4605.1 -0.5 -1.1 FIG001943: hypothetical protein YajQ compare
Xcc-8004.4814.1 -0.5 -0.9 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) compare
Xcc-8004.1323.1 -0.5 -2.2 FIG01212208: hypothetical protein compare
Xcc-8004.288.1 -0.5 -0.8 Ferredoxin compare
Xcc-8004.5122.1 -0.5 -1.5 hypothetical protein compare
Xcc-8004.1336.1 -0.5 -3.0 two-component system sensor protein compare
Xcc-8004.2214.1 -0.5 -1.9 Succinate-semialdehyde dehydrogenase [NAD] (EC 1.2.1.24); Succinate-semialdehyde dehydrogenase [NAD(P)+] (EC 1.2.1.16) compare
Xcc-8004.2958.1 -0.5 -1.0 tryptophan-rich sensory protein compare
Xcc-8004.3103.1 -0.5 -0.9 hypothetical protein compare
Xcc-8004.2372.1 -0.5 -2.3 Pheromone shutdown protein compare
Xcc-8004.3517.1 -0.5 -2.6 Oligopeptide transporter compare
Xcc-8004.462.1 -0.5 -1.7 hypothetical protein compare
Xcc-8004.2160.1 -0.5 -1.8 Uracil phosphoribosyltransferase (EC 2.4.2.9) compare
Xcc-8004.850.1 -0.5 -1.7 ATP-dependent protease HslV (EC 3.4.25.-) compare
Xcc-8004.2949.1 -0.5 -1.5 ATP phosphoribosyltransferase (EC 2.4.2.17) compare
Xcc-8004.4323.1 -0.5 -1.4 hypothetical protein compare
Xcc-8004.1118.1 -0.5 -0.8 hypothetical protein compare
Xcc-8004.4188.1 -0.5 -1.6 Trp repressor binding protein compare
Xcc-8004.1917.1 -0.5 -2.5 Glutathione reductase (EC 1.8.1.7) compare
Xcc-8004.3981.1 -0.4 -2.1 Methylisocitrate lyase (EC 4.1.3.30) compare
Xcc-8004.924.1 -0.4 -1.3 FIG01200701: possible membrane protein compare
Xcc-8004.986.1 -0.4 -1.0 hypothetical protein compare
Xcc-8004.385.1 -0.4 -1.5 FIG01212287: hypothetical protein compare
Xcc-8004.5317.1 -0.4 -1.2 FIG01210332: hypothetical protein compare
Xcc-8004.1511.1 -0.4 -1.5 Ribonuclease E (EC 3.1.26.12) compare
Xcc-8004.5203.1 -0.4 -1.1 Twin-arginine translocation protein TatB compare
Xcc-8004.1906.1 -0.4 -1.0 lipoprotein compare
Xcc-8004.2155.1 -0.4 -2.0 FIG01212077: hypothetical protein compare
Xcc-8004.4035.1 -0.4 -2.4 FIG005121: SAM-dependent methyltransferase (EC 2.1.1.-) compare
Xcc-8004.4653.1 -0.4 -3.3 amino acid transporter compare
Xcc-8004.1720.1 -0.4 -1.4 UPF0301 protein YqgE compare
Xcc-8004.4957.1 -0.4 -1.6 hypothetical protein compare
Xcc-8004.3041.1 -0.4 -1.5 Dna binding response regulator PrrA (RegA) compare
Xcc-8004.3293.1 -0.4 -2.1 Histidine utilization repressor compare


Specific Phenotypes

None in this experiment

For Xanthomonas campestris pv. campestris strain 8004 in moka experiments