Experiment set2IT091 for Xanthomonas campestris pv. campestris strain 8004

Compare to:

MOKA

200 most detrimental genes:

  gene name fitness t score description  
Xcc-8004.1085.1 +1.3 3.0 FIG01212308: hypothetical protein compare
Xcc-8004.5326.1 +1.2 2.6 Mobile element protein compare
Xcc-8004.2055.1 +0.8 2.4 Mobile element protein compare
Xcc-8004.456.1 +0.8 1.8 carbonic anhydrase, family 3 compare
Xcc-8004.4556.1 +0.8 1.2 Lipoprotein releasing system ATP-binding protein LolD compare
Xcc-8004.4982.1 +0.8 2.9 Protein yjbJ compare
Xcc-8004.3721.1 +0.8 1.3 Type III secretion inner membrane protein (YscT,HrcT,SpaR,EscT,EpaR1,homologous to flagellar export components) compare
Xcc-8004.3710.1 +0.8 1.6 hypothetical protein compare
Xcc-8004.3512.1 +0.7 3.0 Transcription repressor of tripartite multidrug resistance system compare
Xcc-8004.4493.1 +0.7 3.0 sugar translocase compare
Xcc-8004.2879.1 +0.7 1.5 Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) compare
Xcc-8004.649.1 +0.7 1.8 hypothetical protein compare
Xcc-8004.2081.1 +0.7 2.6 Xanthan biosynthesis chain length determinant protein GumC compare
Xcc-8004.873.1 +0.7 1.5 S-(hydroxymethyl)glutathione dehydrogenase (EC 1.1.1.284) compare
Xcc-8004.1696.1 +0.7 1.9 N-acetylglutamate synthase (EC 2.3.1.1) compare
Xcc-8004.1705.1 +0.7 2.0 FIG01209877: hypothetical protein compare
Xcc-8004.181.1 +0.7 4.0 putative; ORF located using Glimmer/Genemark compare
Xcc-8004.5018.1 +0.7 1.9 FIG01210512: hypothetical protein compare
Xcc-8004.3923.1 +0.7 1.2 Short-chain dehydrogenase/reductase SDR compare
Xcc-8004.4231.1 +0.7 1.2 two-component system regulatory protein compare
Xcc-8004.1681.1 +0.6 2.9 hypothetical protein compare
Xcc-8004.4374.1 +0.6 2.8 Predicted endonuclease distantly related to archaeal Holliday junction resolvase compare
Xcc-8004.861.1 +0.6 3.1 FIG01211470: hypothetical protein compare
Xcc-8004.995.1 +0.6 2.2 rhamnogalacturonase B compare
Xcc-8004.2060.1 +0.6 2.2 Mobile element protein compare
Xcc-8004.5351.1 +0.6 2.3 HigA protein (antitoxin to HigB) compare
Xcc-8004.399.1 +0.6 1.5 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) compare
Xcc-8004.3739.1 +0.6 1.9 Type III secretion protein HrpE compare
Xcc-8004.4668.1 +0.6 3.2 FIG01210168: hypothetical protein compare
Xcc-8004.4250.1 +0.6 1.7 Aldehyde dehydrogenase (EC 1.2.1.3) compare
Xcc-8004.4503.1 +0.6 3.0 GDP-mannose 4,6-dehydratase (EC 4.2.1.47) compare
Xcc-8004.4313.1 +0.6 2.2 hypothetical protein compare
Xcc-8004.155.1 +0.6 1.3 FIG01210803: hypothetical protein compare
Xcc-8004.2175.1 +0.6 2.4 1-phosphofructokinase (EC 2.7.1.56) compare
Xcc-8004.645.1 +0.6 1.4 probable iron binding protein from the HesB_IscA_SufA family compare
Xcc-8004.2215.1 +0.6 1.0 hypothetical protein compare
Xcc-8004.564.1 +0.6 1.3 Mobile element protein compare
Xcc-8004.2761.1 +0.6 1.8 FIG01212073: hypothetical protein compare
Xcc-8004.401.1 +0.5 1.7 FMN reductase (EC 1.5.1.29) compare
Xcc-8004.3754.1 +0.5 1.8 Tryptophan 2,3-dioxygenase (EC 1.13.11.11) compare
Xcc-8004.2361.1 +0.5 2.1 Cell division protein BolA compare
Xcc-8004.4514.1 +0.5 4.5 Glycosyltransferase compare
Xcc-8004.718.1 +0.5 1.0 hypothetical protein compare
Xcc-8004.3881.1 +0.5 1.5 hypothetical protein compare
Xcc-8004.807.1 +0.5 1.6 FIG01212592: hypothetical protein compare
Xcc-8004.1688.1 +0.5 2.9 Thiamin biosynthesis lipoprotein ApbE compare
Xcc-8004.3788.1 +0.5 2.3 Protein of unknown function DUF1428 compare
Xcc-8004.3459.1 +0.5 1.7 FIG01212836: hypothetical protein compare
Xcc-8004.2346.1 +0.5 0.9 ABC transporter involved in cytochrome c biogenesis, CcmB subunit compare
Xcc-8004.946.1 +0.5 2.1 General secretion pathway protein H compare
Xcc-8004.876.1 +0.5 1.1 Mobile element protein compare
Xcc-8004.4473.1 +0.5 4.4 FIG01212400: hypothetical protein compare
Xcc-8004.48.1 +0.5 2.1 FIG01212903: hypothetical protein compare
Xcc-8004.3525.1 +0.5 2.5 Membrane fusion component of tripartite multidrug resistance system compare
Xcc-8004.5335.1 +0.5 1.1 FIG01214241: hypothetical protein compare
Xcc-8004.2644.1 +0.5 1.1 hypothetical protein compare
Xcc-8004.559.1 +0.5 1.4 FIG01213048: hypothetical protein compare
Xcc-8004.2574.1 +0.5 1.2 FIG004780: hypothetical protein in PFGI-1-like cluster compare
Xcc-8004.4675.1 +0.5 0.8 FIG01211280: hypothetical protein compare
Xcc-8004.3752.1 +0.5 1.3 Isopenicillin N epimerase (EC 5.1.1.17) compare
Xcc-8004.1833.1 +0.5 2.8 FIG01210022: hypothetical protein compare
Xcc-8004.419.1 +0.5 2.6 putative; ORF located using Glimmer/Genemark compare
Xcc-8004.965.1 +0.5 2.4 Betaine aldehyde dehydrogenase (EC 1.2.1.8) compare
Xcc-8004.3613.1 +0.4 2.4 FIG01211929: hypothetical protein compare
Xcc-8004.585.1 +0.4 1.1 Na(+) H(+) antiporter subunit F compare
Xcc-8004.1566.1 +0.4 1.0 Putative activity regulator of membrane protease YbbK compare
Xcc-8004.402.1 +0.4 2.5 FIG01209770: hypothetical protein compare
Xcc-8004.3303.1 +0.4 1.2 Methylthioribose-1-phosphate isomerase (EC 5.3.1.23) compare
Xcc-8004.1804.1 +0.4 1.7 hypothetical protein compare
Xcc-8004.3523.1 +0.4 1.7 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit compare
Xcc-8004.2945.1 +0.4 1.4 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
Xcc-8004.1808.1 +0.4 0.9 L-fuco-beta-pyranose dehydrogenase (EC 1.1.1.122) compare
Xcc-8004.997.1 +0.4 1.1 Possible GRAM domain compare
Xcc-8004.144.1 +0.4 1.6 Putative protein-S-isoprenylcysteine methyltransferase compare
Xcc-8004.2788.1 +0.4 2.7 Flagellar hook-associated protein FlgK compare
Xcc-8004.2385.1 +0.4 3.2 lipopolysaccharide core biosynthesis protein compare
Xcc-8004.3408.1 +0.4 1.9 FIG01210869: hypothetical protein compare
Xcc-8004.2931.1 +0.4 2.1 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) compare
Xcc-8004.2386.1 +0.4 3.3 UDP-N-acetylglucosamine 4,6-dehydratase (EC 4.2.1.-) compare
Xcc-8004.3703.1 +0.4 1.1 putative; ORF located using Glimmer/Genemark compare
Xcc-8004.3674.1 +0.4 1.4 FIG01209931: hypothetical protein compare
Xcc-8004.4700.1 +0.4 1.2 FIG01210206: hypothetical protein compare
Xcc-8004.2700.1 +0.4 2.9 hypothetical protein compare
Xcc-8004.2089.1 +0.4 2.3 Xanthan biosynthesis glucuronosyltransferase GumK compare
Xcc-8004.1778.1 +0.4 2.3 Protein involved in catabolism of external DNA compare
Xcc-8004.2900.1 +0.4 2.0 response regulator compare
Xcc-8004.3884.1 +0.4 1.9 Catalase (EC 1.11.1.6) compare
Xcc-8004.2552.1 +0.4 1.1 Mobile element protein compare
Xcc-8004.1282.1 +0.4 2.3 sulfur deprivation response regulator compare
Xcc-8004.3635.1 +0.4 1.3 RNA polymerase ECF-type sigma factor compare
Xcc-8004.2956.1 +0.4 1.2 Homoserine kinase (EC 2.7.1.39) compare
Xcc-8004.4306.1 +0.4 1.2 hypothetical protein compare
Xcc-8004.1162.1 +0.4 0.9 FIG01210644: hypothetical protein compare
Xcc-8004.4615.1 +0.4 1.7 FIG01210966: hypothetical protein compare
Xcc-8004.4852.1 +0.4 1.2 hypothetical protein compare
Xcc-8004.1467.1 +0.4 1.3 FIG01210828: hypothetical protein compare
Xcc-8004.4630.1 +0.4 0.9 FIG01210108: hypothetical protein compare
Xcc-8004.4494.1 +0.4 3.3 hypothetical protein compare
Xcc-8004.1661.1 +0.4 1.6 Ribosome hibernation protein YhbH compare
Xcc-8004.805.1 +0.4 0.9 Zinc transport protein ZntB compare
Xcc-8004.2699.1 +0.4 2.7 Pyridoxamine 5'-phosphate oxidase (EC 1.4.3.5) compare
Xcc-8004.4327.1 +0.4 0.7 putative; ORF located using Glimmer/Genemark compare
Xcc-8004.3699.1 +0.4 0.9 hypothetical protein compare
Xcc-8004.1726.1 +0.4 2.4 Phenazine biosynthesis protein PhzF like compare
Xcc-8004.3375.1 +0.4 1.3 hypothetical protein compare
Xcc-8004.663.1 +0.4 1.9 Ser/Thr and Tyr protein phosphatase (dual specificity) compare
Xcc-8004.4710.1 +0.4 1.7 FIG01211889: hypothetical protein compare
Xcc-8004.668.1 +0.4 1.7 Phosphatidate cytidylyltransferase (EC 2.7.7.41) compare
Xcc-8004.1843.1 +0.4 2.1 Ribosomal small subunit pseudouridine synthase A (EC 4.2.1.70) compare
Xcc-8004.1978.1 +0.4 1.5 Short-chain dehydrogenase/reductase SDR compare
Xcc-8004.3164.1 +0.4 1.4 FIG01211473: hypothetical protein compare
Xcc-8004.1433.1 +0.4 1.6 Cob(I)alamin adenosyltransferase (EC 2.5.1.17) compare
Xcc-8004.4529.1 +0.4 0.7 FIG01210979: hypothetical protein compare
Xcc-8004.3784.1 +0.4 1.8 Signal transduction histidine kinase compare
Xcc-8004.2260.1 +0.3 1.8 Acetoacetyl-CoA reductase (EC 1.1.1.36) compare
Xcc-8004.1491.1 +0.3 3.0 Glycosyltransferase compare
Xcc-8004.315.1 +0.3 0.8 FIG01211941: hypothetical protein compare
Xcc-8004.3612.1 +0.3 0.7 Putative translation initiation inhibitor, yjgF family compare
Xcc-8004.4629.1 +0.3 1.9 FIG01210386: hypothetical protein compare
Xcc-8004.4403.1 +0.3 0.9 Arsenate reductase (EC 1.20.4.1) compare
Xcc-8004.3737.1 +0.3 1.5 hypothetical protein compare
Xcc-8004.1599.1 +0.3 1.7 hypothetical protein compare
Xcc-8004.3047.1 +0.3 1.4 FIG01210354: hypothetical protein compare
Xcc-8004.1912.1 +0.3 2.5 Cell wall-associated hydrolases (invasion-associated proteins) compare
Xcc-8004.4561.1 +0.3 1.2 Sensor histidine kinase compare
Xcc-8004.1616.1 +0.3 0.7 Shikimate kinase I (EC 2.7.1.71) compare
Xcc-8004.2796.1 +0.3 1.7 FIG01211124: hypothetical protein compare
Xcc-8004.2846.1 +0.3 1.4 Mobile element protein compare
Xcc-8004.4105.1 +0.3 0.8 Peptidyl-prolyl cis-trans isomerase (EC 5.2.1.8) compare
Xcc-8004.4902.1 +0.3 1.5 FIG01211036: hypothetical protein compare
Xcc-8004.1826.1 +0.3 1.1 FIG01217340: hypothetical protein compare
Xcc-8004.17.1 +0.3 1.2 Pyridoxine 5'-phosphate synthase (EC 2.6.99.2) compare
Xcc-8004.4844.1 +0.3 0.5 FIG01210764: hypothetical protein compare
Xcc-8004.2427.1 +0.3 2.9 Two-component system sensor protein compare
Xcc-8004.4755.1 +0.3 2.0 FIG01210453: hypothetical protein compare
Xcc-8004.2403.1 +0.3 1.6 MFS transporter compare
Xcc-8004.4486.1 +0.3 2.7 dTDP-glucose 4,6-dehydratase (EC 4.2.1.46) compare
Xcc-8004.4569.1 +0.3 1.0 Periplasmic chorismate mutase I precursor (EC 5.4.99.5) compare
Xcc-8004.2277.1 +0.3 1.8 FIG01211504: hypothetical protein compare
Xcc-8004.2950.1 +0.3 1.2 His repressor compare
Xcc-8004.852.1 +0.3 1.0 ATP-dependent hsl protease ATP-binding subunit HslU compare
Xcc-8004.5086.1 +0.3 1.3 membrane protein, inferred for ABFAE pathway compare
Xcc-8004.411.1 +0.3 1.2 Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) compare
Xcc-8004.5128.1 +0.3 1.5 Cobalt-zinc-cadmium resistance protein CzcD compare
Xcc-8004.810.1 +0.3 1.3 Endonuclease compare
Xcc-8004.5186.1 +0.3 1.4 hypothetical protein compare
Xcc-8004.1622.1 +0.3 1.0 Membrane protein with DUF350 domain compare
Xcc-8004.1587.1 +0.3 0.9 Inosine-5'-monophosphate dehydrogenase (EC 1.1.1.205) compare
Xcc-8004.2632.1 +0.3 0.6 Minor coat protein compare
Xcc-8004.4481.1 +0.3 2.1 hypothetical protein compare
Xcc-8004.2776.1 +0.3 1.8 Flagellar basal-body P-ring formation protein FlgA compare
Xcc-8004.3629.1 +0.3 1.8 Cation transport protein compare
Xcc-8004.4253.1 +0.3 1.0 Transcriptional regulator, LysR family compare
Xcc-8004.1931.1 +0.3 1.2 FIG01209787: hypothetical protein compare
Xcc-8004.386.1 +0.3 0.9 LysR family transcriptional regulator STM3121 compare
Xcc-8004.5189.1 +0.3 0.7 FIG01212821: hypothetical protein compare
Xcc-8004.3366.1 +0.3 1.3 Ribonuclease T (EC 3.1.13.-) compare
Xcc-8004.3756.1 +0.3 1.0 Glyoxalase family protein compare
Xcc-8004.1144.1 +0.3 1.1 Z-ring-associated protein ZapA compare
Xcc-8004.1802.1 +0.3 1.6 FIG01210984: hypothetical protein compare
Xcc-8004.1518.1 +0.3 1.4 FIG01212366: hypothetical protein compare
Xcc-8004.3804.1 +0.3 1.9 FOG: TPR repeat compare
Xcc-8004.4499.1 +0.3 0.7 Mobile element protein compare
Xcc-8004.5161.1 +0.3 1.0 FIG01212148: hypothetical protein compare
Xcc-8004.3326.1 +0.3 1.3 FIG01212390: hypothetical protein compare
Xcc-8004.5073.1 +0.3 1.2 FIG01210860: hypothetical protein compare
Xcc-8004.3442.1 +0.3 0.9 putative; ORF located using Glimmer/Genemark compare
Xcc-8004.3201.1 +0.3 1.0 hypothetical protein compare
Xcc-8004.4822.1 +0.3 1.8 membrane protein, putative compare
Xcc-8004.4994.1 +0.3 1.5 putative; ORF located using Glimmer/Genemark compare
Xcc-8004.1339.1 +0.3 1.5 FIG01213809: hypothetical protein compare
Xcc-8004.3770.1 +0.3 1.8 Aminodeoxychorismate lyase (EC 4.1.3.38) compare
Xcc-8004.898.1 +0.3 0.7 putative; ORF located using Glimmer/Genemark compare
Xcc-8004.3330.1 +0.3 1.0 FIG01212834: hypothetical protein compare
Xcc-8004.1374.1 +0.3 0.8 Lipoprotein, putative compare
Xcc-8004.1404.1 +0.3 1.5 Vibrioferrin membrane-spanning transport protein PvsC compare
Xcc-8004.2329.1 +0.3 2.0 MFS transporter compare
Xcc-8004.594.1 +0.3 1.5 Lytic enzyme compare
Xcc-8004.5071.1 +0.3 1.4 FIG01210955: hypothetical protein compare
Xcc-8004.3632.1 +0.3 0.9 FIG01209689: hypothetical protein compare
Xcc-8004.4739.1 +0.3 1.6 Lipid A core - O-antigen ligase and related enzymes compare
Xcc-8004.299.1 +0.3 0.6 Acyltransferase compare
Xcc-8004.3865.1 +0.3 1.5 FIG01211221: hypothetical protein compare
Xcc-8004.298.1 +0.3 1.0 Hypothetical protein YaeJ with similarity to translation release factor compare
Xcc-8004.4425.1 +0.3 1.5 General secretion pathway protein L compare
Xcc-8004.3655.1 +0.3 0.5 FIG01210025: hypothetical protein compare
Xcc-8004.1752.1 +0.3 0.6 accessory protein compare
Xcc-8004.4913.1 +0.3 1.1 Nitrogen regulatory protein P-II compare
Xcc-8004.4102.1 +0.3 0.8 FIG01211949: hypothetical protein compare
Xcc-8004.3522.1 +0.3 1.3 FIG01212902: hypothetical protein compare
Xcc-8004.1502.1 +0.3 0.6 twitching motility protein PilG compare
Xcc-8004.1126.1 +0.3 0.8 Electron transfer protein azurin I compare
Xcc-8004.3740.1 +0.3 0.7 Type III secretion HpaB protein compare
Xcc-8004.1657.1 +0.3 0.9 PTS system, mannose-specific IIA component compare
Xcc-8004.724.1 +0.3 1.8 putative; ORF located using Glimmer/Genemark compare
Xcc-8004.2497.1 +0.3 0.5 Mobile element protein compare
Xcc-8004.909.1 +0.3 2.0 FIG01211604: hypothetical protein compare
Xcc-8004.1896.1 +0.3 0.8 putative; ORF located using Glimmer/Genemark compare
Xcc-8004.5140.1 +0.3 0.9 Exodeoxyribonuclease III (EC 3.1.11.2) compare
Xcc-8004.2371.1 +0.3 1.8 putative secreted protein compare


Specific Phenotypes

None in this experiment

For Xanthomonas campestris pv. campestris strain 8004 in moka experiments