Experiment set2IT091 for Rahnella sp. WP5

Compare to:

D-Xylose carbon source

200 most important genes:

  gene name fitness t score description  
EX31_RS20980 -5.7 -3.9 glutamate 5-kinase compare
EX31_RS12510 -5.4 -15.1 FAD-dependent oxidoreductase compare
EX31_RS15005 -5.3 -15.3 dihydroxy-acid dehydratase compare
EX31_RS14205 -5.1 -12.3 methylenetetrahydrofolate reductase compare
EX31_RS14200 -5.1 -16.3 phosphoenolpyruvate carboxylase compare
EX31_RS03935 -5.1 -10.8 threonine synthase compare
EX31_RS03695 -5.0 -7.5 3-isopropylmalate dehydratase small subunit compare
EX31_RS03690 -5.0 -10.1 3-isopropylmalate dehydratase large subunit compare
EX31_RS14215 -4.9 -20.4 cystathionine gamma-synthase compare
EX31_RS03685 -4.9 -14.4 3-isopropylmalate dehydrogenase compare
EX31_RS14190 -4.9 -13.7 N-acetyl-gamma-glutamyl-phosphate reductase compare
EX31_RS14180 -4.9 -15.8 argininosuccinate lyase compare
EX31_RS03940 -4.8 -11.5 homoserine kinase compare
EX31_RS14185 -4.8 -9.2 acetylglutamate kinase compare
EX31_RS04035 -4.8 -12.7 phosphoserine phosphatase compare
EX31_RS12515 -4.8 -26.3 glutamate synthase large subunit compare
EX31_RS11465 -4.8 -6.5 imidazole glycerol phosphate synthase subunit HisF compare
EX31_RS03945 -4.7 -23.2 bifunctional aspartate kinase/homoserine dehydrogenase I compare
EX31_RS09965 -4.7 -3.2 anthranilate phosphoribosyltransferase compare
EX31_RS15020 -4.7 -19.3 ketol-acid reductoisomerase compare
EX31_RS09970 -4.7 -6.4 bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF compare
EX31_RS03830 -4.7 -18.4 carbamoyl-phosphate synthase large subunit compare
EX31_RS23415 -4.4 -7.4 citrate synthase compare
EX31_RS11470 -4.3 -3.0 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
EX31_RS13445 -4.3 -15.5 argininosuccinate synthase compare
EX31_RS09960 -4.3 -5.1 glutamine amidotransferase compare
EX31_RS16860 -4.3 -20.6 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
EX31_RS23245 -4.3 -18.3 asparagine synthase B compare
EX31_RS11460 -4.2 -2.9 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
EX31_RS20975 -4.2 -8.4 glutamate-5-semialdehyde dehydrogenase compare
EX31_RS22625 -4.2 -2.8 5-(carboxyamino)imidazole ribonucleotide mutase compare
EX31_RS13160 -4.2 -13.2 amino-acid N-acetyltransferase compare
EX31_RS20175 -4.1 -10.5 cysteine synthase A compare
EX31_RS21895 -4.1 -19.5 phosphoribosylformylglycinamidine synthase compare
EX31_RS11735 -4.1 -8.7 homoserine O-succinyltransferase compare
EX31_RS22750 -4.1 -3.9 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
EX31_RS09980 -4.1 -6.2 tryptophan synthase subunit alpha compare
EX31_RS22620 -4.0 -8.1 5-(carboxyamino)imidazole ribonucleotide synthase compare
EX31_RS09975 -4.0 -7.6 tryptophan synthase subunit beta compare
EX31_RS12825 -4.0 -9.3 ornithine carbamoyltransferase compare
EX31_RS09890 -4.0 -10.3 HTH-type transcriptional regulator CysB compare
EX31_RS15875 -4.0 -15.8 nitrogen regulation protein NR(II) compare
EX31_RS12400 -4.0 -5.4 RNA polymerase factor sigma-54 compare
EX31_RS15010 -4.0 -16.2 threonine ammonia-lyase, biosynthetic compare
EX31_RS03835 -4.0 -10.7 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit compare
EX31_RS22695 -3.9 -10.4 phosphoribosylformylglycinamidine cyclo-ligase compare
EX31_RS13275 -3.9 -14.0 diaminopimelate decarboxylase compare
EX31_RS21470 -3.9 -12.0 phosphoglycerate dehydrogenase compare
EX31_RS05785 -3.9 -4.6 superoxide dismutase [Mn] compare
EX31_RS16855 -3.9 -16.7 phosphoribosylamine--glycine ligase compare
EX31_RS02690 -3.9 -7.3 pyrroline-5-carboxylate reductase compare
EX31_RS03680 -3.9 -15.4 2-isopropylmalate synthase compare
EX31_RS03250 -3.8 -10.5 RNA polymerase-binding protein DksA compare
EX31_RS09955 -3.7 -7.9 anthranilate synthase component 1 compare
EX31_RS20450 -3.6 -6.0 IMP dehydrogenase compare
EX31_RS02515 -3.6 -3.5 PAS domain-containing protein compare
EX31_RS19570 -3.6 -14.6 amidophosphoribosyltransferase compare
EX31_RS11440 -3.5 -9.3 histidinol dehydrogenase compare
EX31_RS18255 -3.5 -2.4 3-phosphoserine/phosphohydroxythreonine transaminase compare
EX31_RS03775 -3.4 -4.6 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
EX31_RS07895 -3.4 -11.4 phosphoadenylyl-sulfate reductase compare
EX31_RS18530 -3.4 -15.8 leucine-responsive transcriptional regulator Lrp compare
EX31_RS11455 -3.4 -6.3 imidazole glycerol phosphate synthase subunit HisH compare
EX31_RS22245 -3.4 -3.2 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
EX31_RS07585 -3.4 -10.6 bifunctional chorismate mutase/prephenate dehydratase compare
EX31_RS09745 -3.3 -8.1 XylR family transcriptional regulator conserved
EX31_RS07905 -3.3 -19.7 NADPH-dependent assimilatory sulfite reductase flavoprotein subunit compare
EX31_RS20190 -3.3 -2.2 PTS glucose transporter subunit IIA compare
EX31_RS07900 -3.3 -17.9 assimilatory sulfite reductase (NADPH) hemoprotein subunit compare
EX31_RS09770 -3.3 -7.3 xylulokinase conserved
EX31_RS24385 -3.2 -4.8 dihydroorotase compare
EX31_RS09580 -3.2 -2.9 flagellar motor switch protein FliN compare
EX31_RS15880 -3.2 -11.3 nitrogen regulation protein NR(I) compare
EX31_RS07590 -3.2 -2.2 bifunctional chorismate mutase/prephenate dehydrogenase compare
EX31_RS09765 -3.2 -7.9 xylose isomerase conserved
EX31_RS02520 -3.1 -5.1 sigma-54-dependent Fis family transcriptional regulator compare
EX31_RS14310 -3.1 -5.5 6-phosphofructokinase compare
EX31_RS23500 -3.1 -5.4 peptidoglycan-associated lipoprotein Pal compare
EX31_RS02530 -3.1 -5.0 ABC transporter ATP-binding protein compare
EX31_RS03790 -3.1 -3.5 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) compare
EX31_RS03920 -3.0 -9.9 transaldolase compare
EX31_RS14340 -3.0 -2.0 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
EX31_RS15870 -2.9 -2.0 glutamate--ammonia ligase compare
EX31_RS21850 -2.9 -3.3 pyridoxine 5'-phosphate synthase compare
EX31_RS07785 -2.9 -1.8 carbon storage regulator CsrA compare
EX31_RS11450 -2.9 -9.0 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
EX31_RS14335 -2.8 -1.9 serine O-acetyltransferase compare
EX31_RS23440 -2.8 -1.9 2-oxoglutarate dehydrogenase E1 component compare
EX31_RS03030 -2.8 -12.5 helix-turn-helix transcriptional regulator compare
EX31_RS03035 -2.8 -10.3 LysE family transporter compare
EX31_RS20495 -2.8 -10.3 outer membrane protein assembly factor BamB compare
EX31_RS18095 -2.8 -7.9 quinone-dependent dihydroorotate dehydrogenase compare
EX31_RS14500 -2.7 -9.3 orotate phosphoribosyltransferase compare
EX31_RS07870 -2.7 -8.7 adenylyl-sulfate kinase compare
EX31_RS09855 -2.7 -5.8 orotidine-5'-phosphate decarboxylase compare
EX31_RS21400 -2.7 -4.5 transketolase compare
EX31_RS11445 -2.6 -10.1 histidinol-phosphate transaminase compare
EX31_RS03660 -2.6 -13.4 acetolactate synthase small subunit compare
EX31_RS07880 -2.6 -16.2 sulfate adenylyltransferase subunit CysD compare
EX31_RS19655 -2.6 -5.1 beta-ketoacyl-ACP synthase I compare
EX31_RS12785 -2.6 -11.8 aspartate carbamoyltransferase compare
EX31_RS07875 -2.5 -15.0 sulfate adenylyltransferase subunit CysN compare
EX31_RS07955 -2.5 -16.4 GTP diphosphokinase compare
EX31_RS08720 -2.5 -12.9 3'(2'),5'-bisphosphate nucleotidase CysQ compare
EX31_RS03480 -2.5 -1.7 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
EX31_RS15150 -2.5 -8.7 class I adenylate cyclase compare
EX31_RS18540 -2.4 -2.3 cysteine/glutathione ABC transporter permease/ATP-binding protein CydD compare
EX31_RS05270 -2.4 -5.5 carbonic anhydrase compare
EX31_RS02740 -2.4 -2.3 oxidative damage protection protein compare
EX31_RS23495 -2.3 -6.8 Tol-Pal system protein TolB compare
EX31_RS09840 -2.3 -4.6 L-ribulose-5-phosphate 4-epimerase compare
EX31_RS23485 -2.3 -2.9 colicin uptake protein TolR compare
EX31_RS03665 -2.3 -17.1 acetolactate synthase 3 large subunit compare
EX31_RS20185 -2.2 -7.6 phosphoenolpyruvate-protein phosphotransferase PtsI compare
EX31_RS11435 -2.2 -6.7 ATP phosphoribosyltransferase compare
EX31_RS23490 -2.1 -1.4 cell envelope integrity protein TolA compare
EX31_RS13045 -2.0 -13.0 bifunctional uridylyltransferase/uridylyl-removing protein GlnD compare
EX31_RS22250 -2.0 -4.7 ATP-dependent protease ATP-binding subunit ClpX compare
EX31_RS04105 -2.0 -2.9 helix-turn-helix domain-containing protein compare
EX31_RS06140 -1.9 -11.2 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
EX31_RS04390 -1.9 -3.2 DNA polymerase III subunit chi compare
EX31_RS23435 -1.8 -5.8 succinate dehydrogenase iron-sulfur subunit compare
EX31_RS06000 -1.8 -5.3 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
EX31_RS05010 -1.8 -13.5 glycogen synthase GlgA compare
EX31_RS03400 -1.7 -5.1 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase compare
EX31_RS16655 -1.7 -2.7 hypothetical protein compare
EX31_RS20670 -1.7 -1.2 RNA chaperone/antiterminator CspA compare
EX31_RS26075 -1.6 -1.7 hypothetical protein compare
EX31_RS07475 -1.6 -1.4 hypothetical protein compare
EX31_RS09290 -1.6 -2.4 hypothetical protein compare
EX31_RS18450 -1.6 -1.5 hypothetical protein compare
EX31_RS08825 -1.6 -9.9 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
EX31_RS23125 -1.5 -2.6 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH compare
EX31_RS25340 -1.5 -4.2 hypothetical protein compare
EX31_RS21190 -1.5 -3.8 ribonuclease HI compare
EX31_RS19485 -1.5 -5.6 phosphate acetyltransferase compare
EX31_RS12875 -1.5 -2.5 D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase compare
EX31_RS12520 -1.5 -10.1 aerobic respiration two-component sensor histidine kinase ArcB compare
EX31_RS01005 -1.5 -2.8 DotU family type IV/VI secretion system protein compare
EX31_RS04725 -1.5 -3.5 shikimate kinase AroK compare
EX31_RS24625 -1.4 -1.8 DUF2766 domain-containing protein compare
EX31_RS04710 -1.4 -3.3 adenine-specific DNA-methyltransferase compare
EX31_RS09700 -1.4 -3.2 GlpM family protein compare
EX31_RS02325 -1.4 -2.2 GNAT family N-acetyltransferase compare
EX31_RS19480 -1.4 -5.5 acetate kinase compare
EX31_RS03040 -1.4 -6.5 hypothetical protein compare
EX31_RS22430 -1.3 -2.0 hemolysin expression modulator Hha compare
EX31_RS01260 -1.3 -1.7 YebG family protein compare
EX31_RS04925 -1.3 -2.6 Fe-S biogenesis protein NfuA compare
EX31_RS11335 -1.3 -1.7 flagellar protein FlhE compare
EX31_RS10035 -1.3 -1.6 cardiolipin synthase compare
EX31_RS10025 -1.3 -3.0 hypothetical protein compare
EX31_RS14620 -1.3 -1.9 SCP2 domain-containing protein compare
EX31_RS23430 -1.3 -7.2 succinate dehydrogenase flavoprotein subunit compare
EX31_RS11760 -1.2 -11.0 methionine synthase compare
EX31_RS23425 -1.2 -4.9 succinate dehydrogenase membrane anchor subunit compare
EX31_RS19610 -1.2 -5.8 4-phosphoerythronate dehydrogenase PdxB compare
EX31_RS09190 -1.2 -3.2 ABC transporter permease compare
EX31_RS02385 -1.2 -1.0 hypothetical protein compare
EX31_RS02525 -1.2 -5.7 ABC transporter permease compare
EX31_RS24745 -1.2 -2.8 hypothetical protein compare
EX31_RS03655 -1.2 -7.0 catabolite repressor/activator compare
EX31_RS07415 -1.2 -1.4 bifunctional diguanylate cyclase/phosphodiesterase compare
EX31_RS23640 -1.2 -4.5 6-phosphogluconolactonase compare
EX31_RS22800 -1.2 -2.2 ArsC family reductase compare
EX31_RS15865 -1.2 -9.2 ribosome-dependent GTPase TypA compare
EX31_RS02365 -1.2 -1.1 hypothetical protein compare
EX31_RS25415 -1.2 -1.1 helix-turn-helix domain-containing protein compare
EX31_RS08515 -1.2 -8.8 lipoprotein NlpI compare
EX31_RS16625 -1.2 -0.8 bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase compare
EX31_RS05060 -1.1 -6.0 gluconate operon transcriptional repressor GntR compare
EX31_RS09565 -1.1 -1.0 flagellar hook-length control protein FliK compare
EX31_RS15035 -1.1 -5.2 guanosine-5'-triphosphate,3'-diphosphate diphosphatase compare
EX31_RS23470 -1.1 -1.8 cyd operon protein YbgE compare
EX31_RS25370 -1.1 -7.6 HTH-type transcriptional regulator MetR compare
EX31_RS18010 -1.1 -2.4 methylglyoxal synthase compare
EX31_RS15000 -1.1 -7.1 branched-chain amino acid transaminase compare
EX31_RS23030 -1.1 -2.5 transcription antiterminator/RNA stability regulator CspE compare
EX31_RS06055 -1.1 -2.7 phosphate ABC transporter ATP-binding protein PstB compare
EX31_RS11690 -1.1 -2.5 dihydroneopterin triphosphate diphosphatase compare
EX31_RS07380 -1.1 -1.8 redox-regulated ATPase YchF compare
EX31_RS18120 -1.1 -2.5 aliphatic sulfonates ABC transporter ATP-binding protein compare
EX31_RS24400 -1.0 -5.9 23S rRNA pseudouridine(955/2504/2580) synthase RluC compare
EX31_RS14135 -1.0 -9.8 TonB-dependent vitamin B12 receptor BtuB compare
EX31_RS24880 -1.0 -8.5 carboxy terminal-processing peptidase compare
EX31_RS26010 -1.0 -2.1 YnhF family membrane protein compare
EX31_RS19350 -1.0 -3.0 2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase compare
EX31_RS22740 -1.0 -5.8 4-hydroxy-tetrahydrodipicolinate synthase compare
EX31_RS20180 -1.0 -2.1 phosphocarrier protein Hpr compare
EX31_RS03220 -1.0 -1.5 Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC compare
EX31_RS08150 -1.0 -7.2 inorganic triphosphatase compare
EX31_RS18110 -1.0 -5.1 FMNH2-dependent alkanesulfonate monooxygenase compare
EX31_RS19600 -1.0 -4.9 tRNA pseudouridine(38-40) synthase TruA compare
EX31_RS06810 -1.0 -1.6 LysR family transcriptional regulator compare
EX31_RS00220 -1.0 -2.6 Fic family protein compare
EX31_RS03710 -1.0 -1.5 glucose uptake inhibitor SgrT compare
EX31_RS03955 -1.0 -4.7 two-component system response regulator ArcA compare
EX31_RS19400 -1.0 -2.4 NADH-quinone oxidoreductase subunit NuoI compare
EX31_RS11540 -1.0 -3.5 dCTP deaminase compare
EX31_RS12255 -1.0 -6.7 ribonuclease G compare


Specific Phenotypes

For 14 genes in this experiment

For carbon source D-Xylose in Rahnella sp. WP5

For carbon source D-Xylose across organisms