Experiment set2IT091 for Cupriavidus basilensis FW507-4G11

Compare to:

L-Leucine nitrogen source

200 most important genes:

  gene name fitness t score description  
RR42_RS11795 -6.5 -4.4 PEP synthetase regulatory protein compare
RR42_RS01385 -6.4 -4.4 5,10-methylenetetrahydrofolate reductase compare
RR42_RS18305 -6.0 -4.2 anthranilate phosphoribosyltransferase compare
RR42_RS05860 -6.0 -4.2 phospho-2-dehydro-3-deoxyheptonate aldolase compare
RR42_RS15890 -5.7 -5.6 heme biosynthesis protein HemY compare
RR42_RS26895 -5.6 -6.7 3-methylcrotonyl-CoA carboxylase compare
RR42_RS14365 -5.6 -3.8 N-(5'-phosphoribosyl)anthranilate isomerase compare
RR42_RS16265 -5.5 -4.5 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
RR42_RS19005 -5.4 -3.8 3-dehydroquinate synthase compare
RR42_RS33255 -5.4 -3.7 protein-tyrosine phosphatase compare
RR42_RS30655 -5.2 -5.1 LysR family transcriptional regulator compare
RR42_RS06485 -5.1 -7.0 chorismate synthase compare
RR42_RS00955 -5.1 -4.9 hydroxymethylglutaryl-CoA lyase compare
RR42_RS12040 -4.9 -8.8 MFS transporter compare
RR42_RS16965 -4.9 -5.8 ABC transporter compare
RR42_RS16250 -4.9 -6.7 sulfate adenylyltransferase compare
RR42_RS16255 -4.9 -8.1 sulfate adenylyltransferase compare
RR42_RS14320 -4.6 -5.5 O-succinylhomoserine sulfhydrylase compare
RR42_RS18295 -4.6 -8.8 anthranilate synthase component I compare
RR42_RS15905 -4.5 -10.1 phosphoenolpyruvate carboxylase compare
RR42_RS01160 -4.5 -10.9 homoserine O-acetyltransferase compare
RR42_RS33250 -4.5 -4.4 tyrosine protein kinase compare
RR42_RS26905 -4.4 -6.7 methylcrotonoyl-CoA carboxylase compare
RR42_RS04535 -4.3 -5.1 cysteine synthase compare
RR42_RS04475 -4.3 -9.7 3-phosphoshikimate 1-carboxyvinyltransferase compare
RR42_RS33355 -4.2 -5.0 membrane protein compare
RR42_RS15895 -4.2 -7.5 uroporphyrinogen III methyltransferase compare
RR42_RS33260 -4.2 -7.0 multidrug MFS transporter compare
RR42_RS01290 -4.2 -6.4 thiamine biosynthesis protein ThiC compare
RR42_RS34250 -4.2 -9.6 LysR family transcriptional regulator compare
RR42_RS16960 -3.9 -7.9 ABC transporter ATP-binding protein compare
RR42_RS27550 -3.9 -1.7 hypothetical protein compare
RR42_RS33240 -3.9 -14.7 GDP-L-fucose synthase compare
RR42_RS16270 -3.9 -8.9 sulfite reductase compare
RR42_RS16275 -3.8 -3.7 membrane protein compare
RR42_RS17105 -3.8 -10.7 Clp protease ClpX compare
RR42_RS30660 -3.7 -9.6 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase compare
RR42_RS34245 -3.7 -12.2 branched-chain alpha-ketoacid:ferredoxin oxidoreductase, fused (from data) compare
RR42_RS16245 -3.6 -5.2 uroporphyrin-III methyltransferase compare
RR42_RS18300 -3.5 -4.1 anthranilate synthase subunit II compare
RR42_RS11790 -3.3 -7.7 phosphoenolpyruvate synthase compare
RR42_RS07605 -3.3 -5.9 poly-beta-hydroxybutyrate polymerase compare
RR42_RS17645 -3.2 -6.9 shikimate dehydrogenase compare
RR42_RS16980 -3.2 -13.0 branched-chain amino acid ABC transporter substrate-binding protein compare
RR42_RS33245 -3.2 -10.1 mannose-1-phosphate guanyltransferase compare
RR42_RS33235 -3.2 -7.1 GDP-mannose 4,6-dehydratase compare
RR42_RS12985 -3.0 -5.7 histidine kinase compare
RR42_RS12925 -3.0 -3.0 ATPase compare
RR42_RS16970 -3.0 -11.4 ABC transporter ATP-binding protein compare
RR42_RS00940 -3.0 -9.2 biotin synthase compare
RR42_RS01920 -3.0 -3.5 protoheme IX farnesyltransferase compare
RR42_RS07360 -3.0 -4.0 ATPase compare
RR42_RS01845 -2.9 -1.9 glycerol-3-phosphate dehydrogenase compare
RR42_RS12980 -2.9 -5.8 chemotaxis protein CheY compare
RR42_RS04895 -2.9 -11.8 serine/threonine protein phosphatase compare
RR42_RS16975 -2.8 -5.7 ABC transporter permease compare
RR42_RS04460 -2.8 -4.9 chorismate mutase compare
RR42_RS14360 -2.7 -1.6 tryptophan synthase subunit alpha compare
RR42_RS16280 -2.7 -5.3 transcriptional regulator compare
RR42_RS11885 -2.7 -9.9 (protein-PII) uridylyltransferase compare
RR42_RS18850 -2.7 -2.2 preprotein translocase subunit TatC compare
RR42_RS18855 -2.6 -3.7 preprotein translocase compare
RR42_RS19010 -2.6 -5.2 shikimate kinase compare
RR42_RS11785 -2.5 -2.2 NfeD-like family protein 1 compare
RR42_RS26900 -2.4 -3.2 enoyl-CoA hydratase compare
RR42_RS06095 -2.4 -4.5 hypothetical protein compare
RR42_RS19090 -2.4 -2.2 cytochrome C compare
RR42_RS31285 -2.4 -2.3 XRE family transcriptional regulator compare
RR42_RS36415 -2.4 -2.6 3-hydroxy-2-methylbutyryl-CoA dehydrogenase compare
RR42_RS28920 -2.3 -3.3 hypothetical protein compare
RR42_RS16240 -2.3 -1.3 cobalamin biosynthesis protein CbiX compare
RR42_RS20195 -2.3 -1.4 ATPase F0F1 compare
RR42_RS13800 -2.2 -7.4 formyltetrahydrofolate deformylase compare
RR42_RS17055 -2.2 -8.5 LuxR family transcriptional regulator compare
RR42_RS00420 -2.2 -4.2 hypothetical protein compare
RR42_RS20205 -2.2 -2.9 chromosome partitioning protein compare
RR42_RS15410 -2.2 -3.5 membrane protein compare
RR42_RS31290 -2.2 -2.2 XRE family transcriptional regulator compare
RR42_RS00115 -2.1 -2.0 hypothetical protein compare
RR42_RS17060 -2.1 -12.5 histidine kinase compare
RR42_RS01380 -2.1 -2.6 membrane protein compare
RR42_RS14790 -2.1 -7.9 cobalamin biosynthesis protein CobD compare
RR42_RS26915 -2.1 -5.3 AMP-binding protein compare
RR42_RS01780 -2.0 -7.4 glutathione synthetase compare
RR42_RS12305 -2.0 -1.5 hypothetical protein compare
RR42_RS04700 -2.0 -1.7 ribonuclease G compare
RR42_RS13130 -2.0 -2.5 membrane protein compare
RR42_RS33210 -2.0 -4.9 teichoic acid biosynthesis protein compare
RR42_RS18930 -2.0 -4.6 BolA family transcriptional regulator compare
RR42_RS21300 -2.0 -6.0 GntR family transcriptional regulator compare
RR42_RS02705 -2.0 -2.3 Holliday junction DNA helicase RuvA compare
RR42_RS21280 -2.0 -7.3 L-lactate permease compare
RR42_RS21295 -2.0 -2.6 L-lactate dehydrogenase, LutA subunit (from data) compare
RR42_RS21220 -2.0 -2.3 iron transporter FeoB compare
RR42_RS17390 -1.9 -6.4 ATP-dependent DNA helicase RecG compare
RR42_RS07425 -1.9 -5.1 IclR family transcriptional regulator compare
RR42_RS24930 -1.9 -1.2 AraC family transcriptional regulator compare
RR42_RS02045 -1.9 -9.5 GTPase compare
RR42_RS24605 -1.8 -5.9 TetR family transcriptional regulator compare
RR42_RS02320 -1.8 -2.6 trehalose phosphatase compare
RR42_RS32585 -1.8 -1.6 cytochrome C oxidase compare
RR42_RS15865 -1.8 -2.0 uracil phosphoribosyltransferase compare
RR42_RS12175 -1.8 -6.7 malate synthase compare
RR42_RS03080 -1.7 -2.7 recombinase RecA compare
RR42_RS01775 -1.7 -5.4 glutamate--cysteine ligase compare
RR42_RS37400 -1.7 -1.3 6-phosphogluconolactonase compare
RR42_RS21095 -1.7 -5.0 GntR family transcriptional regulator compare
RR42_RS15090 -1.7 -4.2 DNA helicase compare
RR42_RS12550 -1.6 -2.6 hypothetical protein compare
RR42_RS02085 -1.6 -5.0 RNA polymerase subunit sigma-54 compare
RR42_RS02270 -1.6 -1.7 hypothetical protein compare
RR42_RS02500 -1.6 -1.8 TetR family transcriptional regulator compare
RR42_RS02150 -1.6 -2.2 membrane protein compare
RR42_RS33215 -1.5 -7.1 transferase compare
RR42_RS05955 -1.5 -1.3 hypothetical protein compare
RR42_RS03530 -1.5 -1.3 hypothetical protein compare
RR42_RS33575 -1.5 -2.4 hypothetical protein compare
RR42_RS14530 -1.5 -4.0 2-hydroxyacid dehydrogenase compare
RR42_RS35875 -1.5 -7.1 UDP-galactose-4-epimerase compare
RR42_RS06870 -1.4 -3.5 hypothetical protein compare
RR42_RS26935 -1.4 -2.8 farnesyl-diphosphate farnesyltransferase compare
RR42_RS21285 -1.4 -5.5 L-lactate dehydrogenase, LutB subunit (from data) compare
RR42_RS02420 -1.4 -1.0 SAM-dependent methyltransferase compare
RR42_RS03630 -1.4 -1.2 cold-shock protein compare
RR42_RS14055 -1.3 -2.5 elongation factor 4 compare
RR42_RS18815 -1.3 -3.5 cytochrome C compare
RR42_RS19685 -1.3 -1.6 thiosulfate oxidation carrier complex protein SoxZ compare
RR42_RS11770 -1.3 -1.8 cyclase compare
RR42_RS18730 -1.3 -1.7 hypothetical protein compare
RR42_RS00930 -1.3 -5.1 8-amino-7-oxononanoate synthase compare
RR42_RS09670 -1.3 -4.2 hypothetical protein compare
RR42_RS21820 -1.3 -3.1 GntR family transcriptional regulator compare
RR42_RS21040 -1.3 -1.0 hypothetical protein compare
RR42_RS12860 -1.3 -2.1 pseudouridine synthase compare
RR42_RS14405 -1.3 -3.4 leucine/isoleucine/valine transporter ATP-binding subunit compare
RR42_RS04765 -1.2 -1.7 3-oxoacyl-ACP reductase compare
RR42_RS08805 -1.2 -1.4 nitrate reductase compare
RR42_RS31505 -1.2 -1.4 hypothetical protein compare
RR42_RS07555 -1.2 -2.0 potassium transporter Kup compare
RR42_RS09240 -1.2 -1.6 MFS transporter compare
RR42_RS30640 -1.2 -4.5 DNA mismatch repair protein MutT compare
RR42_RS15475 -1.2 -4.7 protein tolQ compare
RR42_RS00875 -1.2 -7.1 isocitrate dehydrogenase compare
RR42_RS28480 -1.2 -2.1 DSBA oxidoreductase compare
RR42_RS13900 -1.2 -3.8 hypothetical protein compare
RR42_RS22030 -1.2 -2.0 hypothetical protein compare
RR42_RS12050 -1.2 -3.8 DNA polymerase compare
RR42_RS06860 -1.2 -1.3 hypothetical protein compare
RR42_RS14965 -1.2 -2.4 hypothetical protein compare
RR42_RS07615 -1.1 -1.8 3-ketoacyl-ACP reductase compare
RR42_RS16460 -1.1 -1.4 cupin compare
RR42_RS07620 -1.1 -3.3 polyhydroxyalkanoate synthesis repressor PhaR compare
RR42_RS20350 -1.1 -1.4 hypothetical protein compare
RR42_RS19065 -1.1 -6.1 transcriptional regulator compare
RR42_RS34215 -1.1 -1.0 ferredoxin compare
RR42_RS26540 -1.1 -1.0 3-phosphoglycerate dehydrogenase compare
RR42_RS13910 -1.1 -4.6 glutamate racemase compare
RR42_RS21290 -1.1 -3.8 L-lactate dehydrogenase, LutC subunit (from data) compare
RR42_RS17620 -1.1 -1.7 phosphatidylglycerophosphatase compare
RR42_RS01875 -1.1 -4.5 cytochrome C oxidase subunit II compare
RR42_RS18820 -1.1 -4.1 cytochrome B compare
RR42_RS33650 -1.1 -2.0 IclR family transcriptional regulator compare
RR42_RS28525 -1.0 -2.0 PadR family transcriptional regulator compare
RR42_RS36610 -1.0 -2.0 host specificity protein compare
RR42_RS00790 -1.0 -4.6 chemotaxis protein CheY compare
RR42_RS00725 -1.0 -2.4 hypothetical protein compare
RR42_RS09180 -1.0 -0.9 Rrf2 family transcriptional regulator compare
RR42_RS36355 -1.0 -2.0 (2Fe-2S)-binding protein compare
RR42_RS15460 -1.0 -2.9 translocation protein TolB compare
RR42_RS19410 -1.0 -3.5 GntR family transcriptional regulator compare
RR42_RS26580 -1.0 -1.3 hypothetical protein compare
RR42_RS04770 -1.0 -1.0 methylglyoxal synthase compare
RR42_RS02775 -1.0 -1.4 molecular chaperone SurA compare
RR42_RS33195 -1.0 -5.4 UDP-sugar lipid carrier transferase compare
RR42_RS12130 -1.0 -1.5 hypothetical protein compare
RR42_RS07890 -1.0 -2.9 hypothetical protein compare
RR42_RS08330 -0.9 -1.0 hypothetical protein compare
RR42_RS05500 -0.9 -1.0 preprotein translocase subunit SecG compare
RR42_RS05125 -0.9 -1.4 malonic semialdehyde reductase compare
RR42_RS11480 -0.9 -2.5 cytochrome C compare
RR42_RS22890 -0.9 -2.8 TetR family transcriptional regulator compare
RR42_RS36545 -0.9 -2.7 3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase compare
RR42_RS01915 -0.9 -3.6 cytochrome C oxidase subunit I compare
RR42_RS26405 -0.9 -1.8 hypothetical protein compare
RR42_RS16260 -0.9 -0.5 phosphoadenosine phosphosulfate reductase compare
RR42_RS15785 -0.9 -3.7 glycosyl transferase family 28 compare
RR42_RS07160 -0.9 -2.8 hypothetical protein compare
RR42_RS15450 -0.9 -2.2 Tol system periplasmic component YbgF compare
RR42_RS32590 -0.9 -1.0 cytochrome o ubiquinol oxidase subunit III compare
RR42_RS05920 -0.9 -2.6 HrcA family transcriptional regulator compare
RR42_RS22090 -0.9 -2.4 hypothetical protein compare
RR42_RS03095 -0.9 -1.4 succinyl-CoA synthetase subunit beta compare
RR42_RS31330 -0.9 -1.1 LysR family transcriptional regulator compare
RR42_RS25200 -0.9 -2.3 TetR family transcriptional regulator compare
RR42_RS28885 -0.9 -3.4 membrane protein compare
RR42_RS14410 -0.9 -2.6 leucine/isoleucine/valine transporter ATP-binding subunit compare
RR42_RS14775 -0.9 -3.9 peptidase M48 compare
RR42_RS17930 -0.9 -2.3 RNA pyrophosphohydrolase compare
RR42_RS06735 -0.9 -0.9 hypothetical protein compare
RR42_RS10505 -0.9 -3.8 citrate synthase compare


Specific Phenotypes

For 2 genes in this experiment

For nitrogen source L-Leucine in Cupriavidus basilensis FW507-4G11

For nitrogen source L-Leucine across organisms