Experiment set2IT091 for Cupriavidus basilensis FW507-4G11

Compare to:

L-Leucine nitrogen source

200 most detrimental genes:

  gene name fitness t score description  
RR42_RS06240 +1.8 2.4 tryptophan--tRNA ligase compare
RR42_RS05420 +1.7 8.0 membrane protein compare
RR42_RS05425 +1.7 8.1 membrane protein compare
RR42_RS21075 +1.6 2.5 phosphoribosyltransferase compare
RR42_RS06020 +1.5 1.9 Fe-S cluster assembly transcriptional regulator IscR compare
RR42_RS07140 +1.4 2.7 hypothetical protein compare
RR42_RS23140 +1.4 1.7 peptidylprolyl isomerase compare
RR42_RS08770 +1.2 1.5 2-nitropropane dioxygenase compare
RR42_RS03020 +1.2 2.1 MarR family transcriptional regulator compare
RR42_RS26455 +1.2 1.9 amino acid ABC transporter ATP-binding protein compare
RR42_RS13685 +1.2 2.3 cupin compare
RR42_RS19860 +1.2 2.0 tartronate semialdehyde reductase compare
RR42_RS17805 +1.2 1.3 hypothetical protein compare
RR42_RS22915 +1.1 3.4 ABC transporter permease compare
RR42_RS23305 +1.1 1.3 hypothetical protein compare
RR42_RS07995 +1.1 2.0 hypothetical protein compare
RR42_RS26875 +1.1 1.8 LysR family transcriptional regulator compare
RR42_RS24520 +1.0 2.7 hypothetical protein compare
RR42_RS32710 +1.0 2.4 hypothetical protein compare
RR42_RS06880 +1.0 2.3 hypothetical protein compare
RR42_RS17495 +1.0 3.9 hypothetical protein compare
RR42_RS09760 +1.0 1.8 hypothetical protein compare
RR42_RS12240 +1.0 1.1 hypothetical protein compare
RR42_RS16760 +1.0 3.9 FAD-dependent oxidoreductase compare
RR42_RS05755 +1.0 2.4 enoyl-CoA hydratase compare
RR42_RS22710 +1.0 3.6 short-chain dehydrogenase compare
RR42_RS08185 +1.0 1.6 hypothetical protein compare
RR42_RS35725 +1.0 1.5 flagellar biosynthesis protein FlgB compare
RR42_RS13730 +1.0 1.7 TetR family transcriptional regulator compare
RR42_RS19465 +1.0 6.3 AsnC family transcriptional regulator compare
RR42_RS25650 +1.0 0.8 hypothetical protein compare
RR42_RS13065 +1.0 7.2 ribonuclease R compare
RR42_RS31920 +0.9 1.7 acetyl-CoA acetyltransferase compare
RR42_RS08550 +0.9 2.6 tail fiber protein compare
RR42_RS09580 +0.9 1.4 hypothetical protein compare
RR42_RS19750 +0.9 1.2 MBL fold metallo-hydrolase compare
RR42_RS12020 +0.9 1.8 GCN5 family acetyltransferase compare
RR42_RS03635 +0.9 2.6 trypsin-like serine protease compare
RR42_RS05085 +0.9 1.9 2-aminomuconate deaminase compare
RR42_RS17235 +0.9 5.9 poly(A) polymerase compare
RR42_RS33815 +0.9 1.2 isochorismatase compare
RR42_RS13420 +0.9 2.3 phosphohistidine phosphatase compare
RR42_RS14880 +0.9 2.8 hypothetical protein compare
RR42_RS27705 +0.9 1.5 NAD-dependent deacetylase compare
RR42_RS02850 +0.9 3.1 phoH-like protein compare
RR42_RS35900 +0.9 4.9 hypothetical protein compare
RR42_RS30285 +0.9 1.7 amidohydrolase compare
RR42_RS14395 +0.9 1.1 entericidin compare
RR42_RS07200 +0.8 2.5 hypothetical protein compare
RR42_RS23880 +0.8 1.8 hypothetical protein compare
RR42_RS02210 +0.8 1.0 succinate dehydrogenase compare
RR42_RS01750 +0.8 6.5 hypothetical protein compare
RR42_RS32960 +0.8 1.4 2-dehydropantoate 2-reductase compare
RR42_RS07630 +0.8 1.3 methyltransferase type 12 compare
RR42_RS23205 +0.8 1.0 hypothetical protein compare
RR42_RS11580 +0.8 1.3 hypothetical protein compare
RR42_RS12155 +0.8 1.5 molecular chaperone compare
RR42_RS14860 +0.8 2.0 hypothetical protein compare
RR42_RS20810 +0.8 1.7 hypothetical protein compare
RR42_RS17375 +0.8 1.3 hypothetical protein compare
RR42_RS23870 +0.8 1.6 hypothetical protein compare
RR42_RS32090 +0.8 1.7 hypothetical protein compare
RR42_RS19485 +0.8 0.9 general secretion pathway protein GspH compare
RR42_RS20965 +0.8 1.9 transferase compare
RR42_RS23550 +0.8 3.0 flagellar export protein FliJ compare
RR42_RS30735 +0.8 1.6 tRNA-Met compare
RR42_RS07920 +0.8 1.4 cyclophilin-like superfamily protein compare
RR42_RS06565 +0.8 1.6 metal-binding protein compare
RR42_RS13305 +0.7 1.3 hypothetical protein compare
RR42_RS07825 +0.7 2.0 D-amino acid oxidase compare
RR42_RS17310 +0.7 2.7 D-lactate dehydrogenase, FAD binding subunit GlcE (EC 1.1.99.6) (from data) compare
RR42_RS25640 +0.7 1.5 3-hydroxyisobutyrate dehydrogenase compare
RR42_RS23230 +0.7 1.1 glycerate kinase compare
RR42_RS20260 +0.7 1.6 hypothetical protein compare
RR42_RS11410 +0.7 1.6 hypothetical protein compare
RR42_RS25015 +0.7 1.9 gluconolactonase compare
RR42_RS03035 +0.7 0.8 membrane protein compare
RR42_RS24515 +0.7 3.0 hypothetical protein compare
RR42_RS23040 +0.7 2.3 hypothetical protein compare
RR42_RS29380 +0.7 3.1 arsenite oxidase small subunit compare
RR42_RS32645 +0.7 1.0 2-keto-4-pentenoate hydratase compare
RR42_RS06355 +0.7 2.2 Fe-S cluster assembly protein HesB compare
RR42_RS03730 +0.7 2.1 polyphosphate kinase compare
RR42_RS26050 +0.7 1.2 hypothetical protein compare
RR42_RS18390 +0.7 2.9 hypothetical protein compare
RR42_RS31830 +0.7 1.3 short-chain dehydrogenase compare
RR42_RS15755 +0.7 1.7 acetyltransferase compare
RR42_RS16310 +0.7 1.0 hypothetical protein compare
RR42_RS06865 +0.7 2.4 hypothetical protein compare
RR42_RS03835 +0.7 2.4 molybdate ABC transporter permease compare
RR42_RS03875 +0.6 1.7 nucleoside 2-deoxyribosyltransferase compare
RR42_RS33425 +0.6 1.9 cobalt-zinc-cadmium resistance protein compare
RR42_RS28085 +0.6 1.3 alkylphosphonate utilization protein PhnG compare
RR42_RS34570 +0.6 1.3 hypothetical protein compare
RR42_RS08220 +0.6 1.0 hypothetical protein compare
RR42_RS07150 +0.6 0.8 hypothetical protein compare
RR42_RS06325 +0.6 1.1 serine O-acetyltransferase compare
RR42_RS22275 +0.6 1.6 hypothetical protein compare
RR42_RS04000 +0.6 2.3 (2Fe-2S)-binding protein compare
RR42_RS32310 +0.6 3.4 toxin YhaV compare
RR42_RS12065 +0.6 1.6 acyl-CoA-binding protein compare
RR42_RS03980 +0.6 2.2 Fis family transcriptional regulator compare
RR42_RS12450 +0.6 1.8 hypothetical protein compare
RR42_RS18945 +0.6 2.6 toluene tolerance protein compare
RR42_RS27095 +0.6 1.1 hypothetical protein compare
RR42_RS11680 +0.6 1.8 hypothetical protein compare
RR42_RS08040 +0.6 1.9 hypothetical protein compare
RR42_RS36490 +0.6 3.4 acyl-CoA dehydrogenase compare
RR42_RS29280 +0.6 0.9 hypothetical protein compare
RR42_RS02960 +0.6 2.3 triphosphoribosyl-dephospho-CoA synthase compare
RR42_RS22010 +0.6 2.9 histidine kinase compare
RR42_RS26485 +0.6 1.1 2,5-dihydroxypyridine 5,6-dioxygenase compare
RR42_RS35995 +0.6 0.9 membrane protein compare
RR42_RS02675 +0.6 1.6 D-tyrosyl-tRNA(Tyr) deacylase compare
RR42_RS35190 +0.6 3.2 LacI family transcriptional regulator compare
RR42_RS09085 +0.6 0.8 C4-dicarboxylate ABC transporter permease compare
RR42_RS25180 +0.6 2.0 AraC family transcriptional regulator compare
RR42_RS23675 +0.6 2.6 hypothetical protein compare
RR42_RS09375 +0.6 0.8 taurine dioxygenase compare
RR42_RS34210 +0.6 0.9 hypothetical protein compare
RR42_RS26950 +0.6 1.6 bacterioferritin compare
RR42_RS33070 +0.6 2.0 oxidoreductase compare
RR42_RS20370 +0.6 0.5 pterin-4-alpha-carbinolamine dehydratase compare
RR42_RS13860 +0.6 2.2 hypothetical protein compare
RR42_RS23860 +0.6 2.3 lytic transglycosylase compare
RR42_RS13620 +0.6 0.7 ferredoxin compare
RR42_RS02030 +0.6 1.3 membrane protein compare
RR42_RS36815 +0.6 1.3 ferredoxin compare
RR42_RS33795 +0.6 2.6 oxidase compare
RR42_RS01655 +0.6 2.2 AMP-dependent synthetase compare
RR42_RS20945 +0.6 1.6 protein-tyrosine phosphatase compare
RR42_RS18165 +0.6 3.7 carbamoyl-phosphate synthase large subunit compare
RR42_RS36245 +0.6 1.3 excisionase compare
RR42_RS27675 +0.6 2.2 esterase compare
RR42_RS22680 +0.6 1.0 enoyl-CoA hydratase compare
RR42_RS01420 +0.6 1.5 2', 3'-cyclic nucleotide 2'-phosphodiesterase compare
RR42_RS10845 +0.6 1.3 cupin compare
RR42_RS17665 +0.6 1.3 chorismate lyase compare
RR42_RS07310 +0.6 1.8 hypothetical protein compare
RR42_RS00185 +0.6 2.5 hypothetical protein compare
RR42_RS30570 +0.6 1.5 hypothetical protein compare
RR42_RS21890 +0.6 3.6 transporter compare
RR42_RS21960 +0.6 2.1 cysteine synthase compare
RR42_RS04980 +0.6 1.2 hypothetical protein compare
RR42_RS24850 +0.6 2.8 alpha/beta hydrolase compare
RR42_RS20975 +0.6 2.6 hypothetical protein compare
RR42_RS31490 +0.6 1.2 hypothetical protein compare
RR42_RS23120 +0.6 1.7 hypothetical protein compare
RR42_RS22390 +0.5 2.4 3-oxoacyl-ACP reductase compare
RR42_RS36050 +0.5 2.0 hypothetical protein compare
RR42_RS05360 +0.5 1.3 membrane protein compare
RR42_RS26715 +0.5 2.0 sulfonate ABC transporter substrate-binding protein compare
RR42_RS21980 +0.5 1.2 transporter compare
RR42_RS01670 +0.5 2.7 23S rRNA methyltransferase compare
RR42_RS28315 +0.5 1.8 GntR family transcriptional regulator compare
RR42_RS29335 +0.5 1.3 integrase compare
RR42_RS35600 +0.5 1.3 hypothetical protein compare
RR42_RS03430 +0.5 2.2 SAM-dependent methyltransferase compare
RR42_RS15080 +0.5 1.1 GntR family transcriptional regulator compare
RR42_RS08320 +0.5 1.3 hypothetical protein compare
RR42_RS16285 +0.5 1.9 methylase compare
RR42_RS22585 +0.5 1.1 MarR family transcriptional regulator compare
RR42_RS05095 +0.5 1.9 4-hyroxy-2-oxovalerate aldolase compare
RR42_RS34305 +0.5 1.2 glutamine ABC transporter ATP-binding protein compare
RR42_RS21375 +0.5 1.3 succinate-semialdehyde dehydrogenase compare
RR42_RS12425 +0.5 1.5 3-hydroxy-3-methylglutaryl-CoA lyase compare
RR42_RS37245 +0.5 1.9 MazF family transcriptional regulator compare
RR42_RS30965 +0.5 1.9 hypothetical protein compare
RR42_RS23915 +0.5 1.8 hypothetical protein compare
RR42_RS22600 +0.5 0.8 heavy metal resistance protein CzcE compare
RR42_RS00065 +0.5 1.8 hypothetical protein compare
RR42_RS10855 +0.5 0.6 diguanylate phosphodiesterase compare
RR42_RS21150 +0.5 1.2 hypothetical protein compare
RR42_RS28745 +0.5 1.4 hypothetical protein compare
RR42_RS17425 +0.5 3.0 chemotaxis protein CheY compare
RR42_RS31995 +0.5 1.0 flavin reductase compare
RR42_RS23365 +0.5 1.6 flagellar biosynthesis protein FliO compare
RR42_RS17625 +0.5 2.1 damage-inducible protein CinA compare
RR42_RS32360 +0.5 1.3 hypothetical protein compare
RR42_RS33915 +0.5 2.2 DNA-binding protein compare
RR42_RS28800 +0.5 3.1 isocitrate dehydrogenase compare
RR42_RS15125 +0.5 2.7 aldolase compare
RR42_RS35660 +0.5 2.1 hypothetical protein compare
RR42_RS36285 +0.5 2.7 hypothetical protein compare
RR42_RS31900 +0.5 0.9 short-chain dehydrogenase compare
RR42_RS15520 +0.5 2.7 hypothetical protein compare
RR42_RS23955 +0.5 1.3 hypothetical protein compare
RR42_RS26150 +0.5 1.6 hypothetical protein compare
RR42_RS32550 +0.5 2.1 taurine dioxygenase compare
RR42_RS28840 +0.5 2.9 hypothetical protein compare
RR42_RS35240 +0.5 1.1 acyl-CoA dehydrogenase compare
RR42_RS03795 +0.5 1.8 tyrosine protein phosphatase compare
RR42_RS26725 +0.5 1.0 diguanylate cyclase compare
RR42_RS05700 +0.5 1.9 hypothetical protein compare
RR42_RS03210 +0.5 2.3 pyruvate kinase compare
RR42_RS22145 +0.5 1.8 amine dehydrogenase compare
RR42_RS23250 +0.5 1.5 glyoxalase compare
RR42_RS04180 +0.5 0.4 methyltransferase compare
RR42_RS06335 +0.5 1.0 cyclophilin compare
RR42_RS10500 +0.5 2.3 hypothetical protein compare


Specific Phenotypes

For 2 genes in this experiment

For nitrogen source L-Leucine in Cupriavidus basilensis FW507-4G11

For nitrogen source L-Leucine across organisms