Experiment set2IT091 for Burkholderia phytofirmans PsJN

Compare to:

outer cut, LB soft agar motility assay

200 most important genes:

  gene name fitness t score description  
BPHYT_RS15075 -5.9 -2.5 dihydrokaempferol 4-reductase compare
BPHYT_RS16710 -5.5 -1.4 LysR family transcriptional regulator compare
BPHYT_RS08850 -5.1 -2.5 transcriptional regulator compare
BPHYT_RS06175 -4.9 -6.9 LPS biosynthesis compare
BPHYT_RS14865 -4.9 -3.3 UDP-glucose 6-dehydrogenase compare
BPHYT_RS14855 -4.6 -2.7 ADP-L-glycero-D-manno-heptose-6-epimerase compare
BPHYT_RS09315 -4.5 -1.1 chemotaxis protein CheY compare
BPHYT_RS14400 -4.5 -3.3 anti-sigma factor compare
BPHYT_RS04285 -4.3 -2.5 rhamnosyltransferase compare
BPHYT_RS02865 -4.2 -3.9 hypothetical protein compare
BPHYT_RS02965 -4.2 -3.1 membrane protein compare
BPHYT_RS01485 -4.2 -1.0 histidine kinase compare
BPHYT_RS23840 -4.1 -2.7 methyltransferase compare
BPHYT_RS18965 -4.1 -1.4 chemotaxis protein CheY compare
BPHYT_RS16175 -4.1 -2.9 hemolysin D compare
BPHYT_RS16215 -3.8 -6.3 sensor histidine kinase compare
BPHYT_RS18910 -3.8 -2.1 FlgN compare
BPHYT_RS06530 -3.8 -1.2 membrane protein compare
BPHYT_RS16840 -3.7 -2.6 transketolase compare
BPHYT_RS03655 -3.7 -1.3 membrane protein compare
BPHYT_RS18860 -3.7 -4.1 flagellar P-ring protein FlgI compare
BPHYT_RS18865 -3.6 -4.4 flagellar L-ring protein FlgH compare
BPHYT_RS01625 -3.6 -4.2 chemotaxis protein CheY compare
BPHYT_RS03725 -3.5 -2.0 serine hydroxymethyltransferase compare
BPHYT_RS14395 -3.5 -8.4 sugar dehydratase compare
BPHYT_RS19085 -3.3 -6.9 flagellin compare
BPHYT_RS04370 -3.2 -1.9 glycosyl transferase compare
BPHYT_RS04290 -3.2 -2.4 glycosyl transferase family 2 compare
BPHYT_RS18870 -3.2 -6.0 flagellar basal body rod protein FlgG compare
BPHYT_RS16255 -3.1 -5.3 phosphoribosylaminoimidazole-succinocarboxamide synthase compare
BPHYT_RS18895 -3.0 -3.2 flagellar basal body rod protein FlgB compare
BPHYT_RS18795 -3.0 -8.2 flagellar export protein FliJ compare
BPHYT_RS06190 -2.9 -2.8 heptosyltransferase compare
BPHYT_RS09500 -2.9 -5.6 glucose-6-phosphate isomerase compare
BPHYT_RS16835 -2.9 -6.0 glyceraldehyde-3-phosphate dehydrogenase compare
BPHYT_RS09620 -2.9 -3.7 aminodeoxychorismate lyase compare
BPHYT_RS15710 -2.9 -2.5 ATP-dependent Clp protease ATP-binding protein compare
BPHYT_RS18825 -2.9 -6.6 flagellar biosynthesis protein FliP compare
BPHYT_RS16210 -2.8 -3.9 peptidase compare
BPHYT_RS18840 -2.8 -10.1 flagellar hook-associated protein FlgL compare
BPHYT_RS24500 -2.8 -1.9 histidine kinase compare
BPHYT_RS07325 -2.8 -1.1 GntR family transcriptional regulator compare
BPHYT_RS18970 -2.8 -10.2 chemotaxis protein compare
BPHYT_RS18785 -2.7 -1.7 flagellar assembly protein FliH compare
BPHYT_RS19100 -2.7 -11.1 hypothetical protein compare
BPHYT_RS02975 -2.7 -3.1 membrane protein compare
BPHYT_RS17520 -2.7 -6.1 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase compare
BPHYT_RS17240 -2.7 -1.3 cell division protein FtsW compare
BPHYT_RS08565 -2.7 -1.7 dihydroorotate dehydrogenase compare
BPHYT_RS18845 -2.7 -12.1 flagellar hook-associated protein FlgK conserved
BPHYT_RS13245 -2.6 -5.6 hypothetical protein compare
BPHYT_RS18765 -2.6 -6.2 flagellar biosynthesis protein FliS compare
BPHYT_RS18945 -2.6 -8.2 flagellar biosynthesis protein FlhB compare
BPHYT_RS19115 -2.6 -2.7 acyl carrier protein compare
BPHYT_RS33515 -2.6 -9.1 porin compare
BPHYT_RS16245 -2.6 -6.5 phosphoribosylaminoimidazole carboxylase compare
BPHYT_RS06685 -2.6 -2.3 NADH:ubiquinone oxidoreductase subunit M compare
BPHYT_RS09515 -2.5 -4.6 phosphoribosylformylglycinamidine synthase compare
BPHYT_RS18925 -2.4 -9.2 RNA polymerase sigma70 compare
BPHYT_RS02130 -2.4 -3.9 hydroxymethylglutaryl-CoA lyase compare
BPHYT_RS19120 -2.4 -4.8 3-oxoacyl-ACP synthase compare
BPHYT_RS18880 -2.4 -7.6 flagellar hook protein FlgE compare
BPHYT_RS35835 -2.4 -4.2 hypothetical protein compare
BPHYT_RS03640 -2.4 -4.3 phosphoribosylformylglycinamidine cyclo-ligase compare
BPHYT_RS19105 -2.3 -9.9 aminotransferase compare
BPHYT_RS24315 -2.3 -2.3 phosphoribosyltransferase compare
BPHYT_RS01790 -2.3 -10.0 LuxR family transcriptional regulator compare
BPHYT_RS18830 -2.3 -6.7 flagellar biosynthesis protein FliQ compare
BPHYT_RS19125 -2.3 -4.6 short-chain dehydrogenase compare
BPHYT_RS18900 -2.3 -9.3 flagella basal body P-ring formation protein FlgA compare
BPHYT_RS19015 -2.3 -9.9 flagellar motor protein MotA conserved
BPHYT_RS20665 -2.3 -0.9 LysR family transcriptional regulator compare
BPHYT_RS18890 -2.2 -5.0 flagellar basal body rod protein FlgC compare
BPHYT_RS02525 -2.2 -8.4 membrane protein compare
BPHYT_RS29320 -2.2 -2.2 histidine kinase compare
BPHYT_RS18790 -2.2 -6.4 ATP synthase compare
BPHYT_RS06325 -2.2 -5.8 ATPase compare
BPHYT_RS34815 -2.2 -2.4 ABC transporter compare
BPHYT_RS18995 -2.2 -6.9 purine-binding chemotaxis protein compare
BPHYT_RS34810 -2.1 -4.7 RND transporter compare
BPHYT_RS36005 -2.1 -6.3 hypothetical protein compare
BPHYT_RS18775 -2.1 -9.2 flagellar M-ring protein FliF compare
BPHYT_RS12465 -2.1 -2.7 inositol monophosphatase compare
BPHYT_RS14505 -2.1 -2.2 membrane protein compare
BPHYT_RS16250 -2.1 -1.1 N5-carboxyaminoimidazole ribonucleotide mutase compare
BPHYT_RS16340 -2.1 -6.4 succinyl-CoA synthetase subunit alpha compare
BPHYT_RS19130 -2.1 -3.5 acetyltransferase compare
BPHYT_RS02285 -2.1 -4.2 cell division protein compare
BPHYT_RS18935 -2.1 -4.6 flagellar biosynthesis regulator FlhF compare
BPHYT_RS20235 -2.1 -7.6 iron ABC transporter compare
BPHYT_RS02135 -2.1 -2.7 glyoxylate reductase compare
BPHYT_RS16345 -2.0 -5.5 succinyl-CoA ligase [ADP-forming] subunit beta compare
BPHYT_RS18810 -2.0 -6.0 flagellar motor switch protein FliM compare
BPHYT_RS36000 -2.0 -2.9 hypothetical protein compare
BPHYT_RS15615 -2.0 -2.8 4-hydroxy-3-methylbut-2-enyl diphosphate reductase compare
BPHYT_RS18855 -2.0 -5.7 flagellar rod assembly protein FlgJ compare
BPHYT_RS08765 -2.0 -1.0 ABC transporter ATP-binding protein compare
BPHYT_RS26355 -1.9 -1.7 hypothetical protein compare
BPHYT_RS12615 -1.9 -1.4 dihydrodipicolinate synthase compare
BPHYT_RS03685 -1.9 -2.7 Tol system periplasmic component YbgF compare
BPHYT_RS19000 -1.9 -5.0 chemotaxis protein CheA compare
BPHYT_RS17035 -1.9 -2.8 sugar kinase compare
BPHYT_RS18885 -1.9 -3.3 flagellar basal body rod modification protein FlgD compare
BPHYT_RS03400 -1.9 -1.2 ATP-dependent DNA helicase RecG compare
BPHYT_RS18415 -1.9 -3.0 hypothetical protein compare
BPHYT_RS16270 -1.9 -3.8 phosphoglycerate kinase compare
BPHYT_RS02590 -1.9 -6.4 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase compare
BPHYT_RS06990 -1.9 -1.4 membrane protein compare
BPHYT_RS33535 -1.8 -12.1 RNA polymerase sigma factor RpoD compare
BPHYT_RS01795 -1.8 -5.0 histidine kinase compare
BPHYT_RS14060 -1.8 -1.4 peptidase M23 compare
BPHYT_RS14840 -1.8 -9.1 lytic transglycosylase compare
BPHYT_RS17890 -1.8 -1.7 shikimate kinase compare
BPHYT_RS12925 -1.8 -1.1 exodeoxyribonuclease III compare
BPHYT_RS06195 -1.8 -2.1 membrane protein compare
BPHYT_RS15620 -1.8 -3.1 peptidyl-prolyl cis-trans isomerase compare
BPHYT_RS22560 -1.8 -3.2 flagellar transcriptional regulator FlhD compare
BPHYT_RS10740 -1.8 -1.4 LuxR family transcriptional regulator compare
BPHYT_RS25955 -1.7 -2.2 transcriptional regulator compare
BPHYT_RS04385 -1.7 -2.1 nucleoside-diphosphate sugar oxidoreductase compare
BPHYT_RS33890 -1.7 -6.6 fimbrial protein FimV compare
BPHYT_RS02415 -1.7 -3.8 cytochrome C550 compare
BPHYT_RS30750 -1.7 -1.6 GntR family transcriptional regulator compare
BPHYT_RS06375 -1.7 -5.5 ribonuclease compare
BPHYT_RS12510 -1.7 -2.4 RNA-binding protein compare
BPHYT_RS23140 -1.7 -2.8 putrescine/spermidine ABC transporter permease compare
BPHYT_RS09105 -1.7 -3.1 protein-L-isoaspartate O-methyltransferase compare
BPHYT_RS16130 -1.7 -5.4 cation ABC transporter substrate-binding protein compare
BPHYT_RS36385 -1.7 -1.0 TetR family transcriptional regulator compare
BPHYT_RS04335 -1.7 -1.5 membrane protein compare
BPHYT_RS34805 -1.6 -5.0 ABC transporter compare
BPHYT_RS01585 -1.6 -5.3 major facilitator superfamily protein compare
BPHYT_RS18610 -1.6 -3.7 lytic transglycosylase compare
BPHYT_RS11705 -1.6 -1.0 hypothetical protein compare
BPHYT_RS11635 -1.6 -0.9 RNA polymerase subunit sigma-24 compare
BPHYT_RS18875 -1.6 -2.5 flagellar basal body rod protein FlgF compare
BPHYT_RS28705 -1.6 -1.3 IclR family transcriptional regulator compare
BPHYT_RS17165 -1.6 -3.8 cell division protein ZapD compare
BPHYT_RS20245 -1.6 -5.9 iron ABC transporter substrate-binding protein compare
BPHYT_RS09100 -1.6 -3.4 stationary phase survival protein SurE compare
BPHYT_RS01955 -1.6 -2.5 hypothetical protein compare
BPHYT_RS12990 -1.6 -2.1 iron transporter compare
BPHYT_RS21335 -1.5 -1.7 CDP-alcohol phosphatidyltransferase compare
BPHYT_RS21340 -1.5 -3.2 2OG-Fe(II) oxygenase compare
BPHYT_RS19305 -1.5 -4.7 ATP-dependent DNA helicase Rep compare
BPHYT_RS01620 -1.5 -5.9 sensor histidine kinase compare
BPHYT_RS02595 -1.5 -0.8 sulfurtransferase compare
BPHYT_RS01425 -1.5 -4.1 3-phosphoglycerate dehydrogenase compare
BPHYT_RS15020 -1.5 -6.5 tetratricopeptide repeat protein compare
BPHYT_RS16290 -1.5 -1.0 hypothetical protein compare
BPHYT_RS19010 -1.5 -4.3 flagellar motor protein MotB conserved
BPHYT_RS17530 -1.5 -5.5 3-octaprenyl-4-hydroxybenzoate carboxy-lyase compare
BPHYT_RS32880 -1.5 -1.2 alanine acetyltransferase compare
BPHYT_RS19565 -1.5 -5.2 gamma-glutamyl:cysteine ligase compare
BPHYT_RS36365 -1.5 -2.1 hypothetical protein compare
BPHYT_RS16880 -1.4 -1.4 malic enzyme compare
BPHYT_RS18940 -1.4 -6.6 flagellar biosynthesis protein FlhA compare
BPHYT_RS11535 -1.4 -2.0 membrane protein compare
BPHYT_RS08150 -1.4 -0.8 membrane protein compare
BPHYT_RS04595 -1.4 -1.5 cytoplasmic protein compare
BPHYT_RS18800 -1.4 -2.9 flagellar hook-length control protein compare
BPHYT_RS14250 -1.4 -3.8 glycosyl transferase compare
BPHYT_RS06550 -1.4 -2.6 acetolactate synthase compare
BPHYT_RS02860 -1.4 -0.9 membrane protein compare
BPHYT_RS06760 -1.4 -3.9 3-hydroxyacyl-CoA dehydrogenase compare
BPHYT_RS22360 -1.4 -1.9 response regulator receiver compare
BPHYT_RS08960 -1.4 -1.3 threonine synthase compare
BPHYT_RS14450 -1.4 -2.4 hypothetical protein compare
BPHYT_RS36025 -1.4 -3.2 hypothetical protein compare
BPHYT_RS22530 -1.4 -1.4 N5,N10-methylene tetrahydromethanopterin reductase compare
BPHYT_RS17860 -1.4 -3.9 transposase compare
BPHYT_RS05615 -1.3 -1.1 hypothetical protein compare
BPHYT_RS04455 -1.3 -0.9 glycosyl transferase compare
BPHYT_RS18255 -1.3 -1.8 phenylacetate-CoA oxygenase subunit PaaB compare
BPHYT_RS17100 -1.3 -4.4 RNA pyrophosphohydrolase compare
BPHYT_RS06535 -1.3 -1.7 membrane protein compare
BPHYT_RS13605 -1.3 -0.7 tRNA-Pro compare
BPHYT_RS01435 -1.3 -11.3 LysR family transcriptional regulator compare
BPHYT_RS09000 -1.3 -0.9 competence protein ComE compare
BPHYT_RS19110 -1.3 -4.8 3-oxoacyl-ACP synthase compare
BPHYT_RS28470 -1.3 -1.3 hypothetical protein compare
BPHYT_RS05455 -1.3 -2.5 AraC family transcriptional regulator compare
BPHYT_RS04885 -1.3 -2.1 threonine-phosphate decarboxylase compare
BPHYT_RS17945 -1.3 -1.4 cytochrome C biogenesis protein compare
BPHYT_RS06600 -1.3 -1.3 polynucleotide phosphorylase/polyadenylase compare
BPHYT_RS07595 -1.3 -1.4 membrane protein compare
BPHYT_RS07540 -1.3 -0.8 hypothetical protein compare
BPHYT_RS20060 -1.3 -1.1 hypothetical protein compare
BPHYT_RS05190 -1.3 -4.2 ADP-heptose--LPS heptosyltransferase compare
BPHYT_RS10135 -1.3 -0.9 hypothetical protein compare
BPHYT_RS13390 -1.3 -0.9 IclR family transcriptional regulator compare
BPHYT_RS20940 -1.3 -2.6 citrate synthase compare
BPHYT_RS33610 -1.3 -1.2 DNA polymerase I compare
BPHYT_RS05320 -1.3 -1.4 beta-lactamase compare
BPHYT_RS18985 -1.3 -1.7 hypothetical protein compare
BPHYT_RS29450 -1.3 -1.5 phosphonate metabolism protein compare
BPHYT_RS23570 -1.3 -3.9 chemotaxis protein CheY compare
BPHYT_RS08060 -1.3 -3.7 ribosome maturation factor RimP compare
BPHYT_RS05620 -1.3 -1.0 CsbD family protein compare
BPHYT_RS18780 -1.3 -2.6 flagellar motor switch protein FliG compare


Specific Phenotypes

For 7 genes in this experiment

For motility Agar in Burkholderia phytofirmans PsJN

For motility Agar across organisms