Experiment set2IT090 for Pseudomonas fluorescens FW300-N2C3

Compare to:

L-Lysine carbon source

Genes with specific phenotypes:

  gene name fitness t score description  
AO356_14230 -5.0 -10.6 lysine 2-monooxygenase (EC 1.13.12.2) (from data) conserved
AO356_10850 -4.4 -14.2 acyl-CoA dehydrogenase conserved
AO356_21640 -4.3 -5.8 acetyl-CoA C-acetyltransferase [EC: 2.3.1.9] (from data) conserved
AO356_14245 -3.7 -6.2 AsnC family transcriptional regulator conserved
AO356_01105 -3.7 -8.2 putative hydrolase, required for lysine catabolism (from data) conserved
AO356_10715 -3.6 -11.9 4-aminobutyrate aminotransferase compare
AO356_14225 -3.4 -9.2 5-aminopentanamidase (EC 3.5.1.30) (from data) conserved
AO356_10855 -3.3 -13.2 LysR family transcriptional regulator conserved
AO356_10845 -3.2 -13.1 succinyl-CoA-glutarate CoA-transferase (EC 2.8.3.13) (from data) conserved
AO356_05495 -3.0 -9.6 ABC transporter for L-Lysine, periplasmic substrate-binding component (from data) conserved
AO356_13905 -2.6 -11.4 N-methylproline demethylase compare
AO356_08510 -2.4 -9.8 aldehyde dehydrogenase conserved
AO356_13910 -2.4 -9.5 (Fe-S)-binding protein compare
AO356_13915 -2.3 -5.8 electron transfer flavoprotein subunit alpha compare
AO356_22970 -2.3 -5.9 Branched-chain amino acid aminotransferase (EC 2.6.1.42) (from data) compare
AO356_09125 -2.2 -6.4 GntR family transcriptional regulator compare
AO356_09905 -2.1 -10.7 ABC transporter for L-Lysine, permease component 1 (from data) conserved
AO356_05500 -2.1 -8.3 ABC transporter for L-Lysine, permease component 1 (from data) conserved
AO356_05505 -1.9 -9.2 ABC transporter for L-Lysine, permease component 2 (from data) conserved
AO356_14235 -1.9 -7.3 addiction module toxin RelE compare
AO356_09910 -1.8 -7.7 ABC transporter for L-Lysine, permease component 2 (from data) compare
AO356_04605 -1.7 -7.4 histidine kinase compare
AO356_15380 -1.7 -5.6 hypothetical protein compare
AO356_09900 -1.6 -7.1 ABC transporter for L-Lysine, periplasmic substrate-binding component (from data) compare
AO356_08505 -1.6 -8.7 FAD-dependent oxidoreductase conserved
AO356_23815 -1.6 -5.6 amidase compare
AO356_22800 -1.5 -5.3 glutathione reductase compare
AO356_08490 -1.5 -9.6 branched-chain amino acid ABC transporter permease compare
AO356_08515 -1.5 -6.6 LysR family transcriptional regulator compare
AO356_04995 -1.5 -5.6 LysR family transcriptional regulator compare
AO356_24705 -1.5 -7.4 NAD-glutamate dehydrogenase compare
AO356_16680 -1.3 -5.2 phosphate acetyltransferase compare
AO356_14390 -1.2 -5.1 spermidine/putrescine ABC transporter substrate-binding protein compare
AO356_13900 -1.2 -5.4 hydrocarbon binding protein compare
AO356_14240 -1.2 -5.8 transcriptional regulator compare
AO356_01585 -1.2 -6.0 3-methylcrotonyl-CoA carboxylase, beta subunit (EC 6.4.1.4) (from data) compare
AO356_01580 -1.2 -5.8 Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) (from data) compare
AO356_09875 +1.0 6.7 hypothetical protein compare
AO356_17440 +1.0 6.0 nucleoid-associated protein compare
AO356_09865 +1.0 5.1 histidine kinase compare
AO356_07250 +1.1 6.4 porin compare
AO356_11100 +1.2 8.5 L-asparaginase (EC 3.5.1.1) (from data) compare
AO356_09885 +1.2 5.7 plasmid maintenance protein compare
AO356_07245 +1.3 7.7 peptide ABC transporter substrate-binding protein compare
AO356_09890 +1.5 11.2 hypothetical protein compare
AO356_13140 +1.9 5.8 Gamma-glutamyl-GABA hydrolase (EC 3.5.1.94) (from data) compare
AO356_07270 +2.0 8.4 peptide ABC transporter ATP-binding protein compare
AO356_07260 +2.0 16.4 peptide ABC transporter permease compare
AO356_07275 +2.0 14.8 peptide ABC transporter ATP-binding protein compare
AO356_07840 +2.1 7.8 hypothetical protein compare
AO356_07265 +2.1 9.0 peptide transporter compare
AO356_07240 +2.2 19.4 peptide ABC transporter substrate-binding protein compare
AO356_12045 +2.5 7.1 homocysteine methyltransferase compare
AO356_14375 +2.6 7.8 histidine kinase compare
AO356_01565 +3.2 15.1 MerR family transcriptional regulator compare
AO356_18715 +4.1 14.1 L-Arginine ABC transporter, ATPase component (from data) conserved
AO356_18705 +4.4 32.7 L-Arginine ABC transporter, permease component 2 (from data) conserved
AO356_18710 +4.4 38.6 L-Arginine ABC transporter, permease component 1 (from data) conserved
AO356_18700 +5.4 23.6 L-Arginine ABC transporter, periplasmic substrate-binding component (from data) compare


Specific phenotypes for carbon source L-Lysine across organisms