Experiment set2IT090 for Rahnella sp. WP5

Compare to:

casamino acids carbon source

200 most important genes:

  gene name fitness t score description  
EX31_RS22695 -4.0 -9.9 phosphoribosylformylglycinamidine cyclo-ligase compare
EX31_RS19570 -4.0 -12.4 amidophosphoribosyltransferase compare
EX31_RS12400 -3.9 -4.7 RNA polymerase factor sigma-54 compare
EX31_RS22625 -3.9 -2.7 5-(carboxyamino)imidazole ribonucleotide mutase compare
EX31_RS16860 -3.9 -20.0 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
EX31_RS09960 -3.8 -6.2 glutamine amidotransferase compare
EX31_RS21895 -3.7 -18.4 phosphoribosylformylglycinamidine synthase compare
EX31_RS16855 -3.6 -15.6 phosphoribosylamine--glycine ligase compare
EX31_RS23450 -3.5 -2.4 ADP-forming succinate--CoA ligase subunit beta compare
EX31_RS22750 -3.5 -4.7 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
EX31_RS09965 -3.3 -7.5 anthranilate phosphoribosyltransferase compare
EX31_RS22620 -3.3 -7.2 5-(carboxyamino)imidazole ribonucleotide synthase compare
EX31_RS13045 -3.2 -13.9 bifunctional uridylyltransferase/uridylyl-removing protein GlnD compare
EX31_RS13945 -3.2 -8.6 3-deoxy-7-phosphoheptulonate synthase conserved
EX31_RS05785 -3.2 -4.8 superoxide dismutase [Mn] compare
EX31_RS20190 -3.2 -2.1 PTS glucose transporter subunit IIA compare
EX31_RS22245 -3.1 -3.0 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
EX31_RS08130 -3.1 -2.1 accessory factor UbiK family protein compare
EX31_RS23455 -3.1 -2.1 succinate--CoA ligase subunit alpha compare
EX31_RS09580 -3.1 -2.8 flagellar motor switch protein FliN compare
EX31_RS23245 -2.9 -18.8 asparagine synthase B compare
EX31_RS13335 -2.6 -1.8 transcriptional regulator compare
EX31_RS21850 -2.6 -3.0 pyridoxine 5'-phosphate synthase compare
EX31_RS08670 -2.6 -13.8 class 1 fructose-bisphosphatase conserved
EX31_RS09970 -2.5 -8.1 bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF compare
EX31_RS02515 -2.5 -6.0 PAS domain-containing protein compare
EX31_RS08965 -2.5 -13.6 aspartate ammonia-lyase compare
EX31_RS22250 -2.5 -4.3 ATP-dependent protease ATP-binding subunit ClpX compare
EX31_RS14165 -2.5 -14.6 Si-specific NAD(P)(+) transhydrogenase compare
EX31_RS14335 -2.4 -2.3 serine O-acetyltransferase compare
EX31_RS03655 -2.4 -10.3 catabolite repressor/activator compare
EX31_RS09980 -2.4 -7.4 tryptophan synthase subunit alpha compare
EX31_RS15870 -2.3 -3.5 glutamate--ammonia ligase compare
EX31_RS09955 -2.2 -8.5 anthranilate synthase component 1 compare
EX31_RS12875 -2.2 -2.9 D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase compare
EX31_RS01805 -2.2 -2.3 hypothetical protein compare
EX31_RS15540 -2.2 -2.3 SDR family oxidoreductase compare
EX31_RS03480 -2.2 -2.1 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
EX31_RS02530 -2.2 -4.1 ABC transporter ATP-binding protein compare
EX31_RS03775 -2.2 -4.4 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
EX31_RS23435 -2.1 -5.7 succinate dehydrogenase iron-sulfur subunit compare
EX31_RS09775 -2.1 -2.2 (4S)-4-hydroxy-5-phosphonooxypentane-2,3-dione isomerase compare
EX31_RS20450 -2.0 -6.5 IMP dehydrogenase compare
EX31_RS06055 -2.0 -3.5 phosphate ABC transporter ATP-binding protein PstB compare
EX31_RS14575 -2.0 -5.5 NAD(P)H-flavin reductase compare
EX31_RS23440 -2.0 -2.3 2-oxoglutarate dehydrogenase E1 component compare
EX31_RS23430 -2.0 -9.0 succinate dehydrogenase flavoprotein subunit compare
EX31_RS24385 -2.0 -4.8 dihydroorotase compare
EX31_RS19655 -2.0 -4.7 beta-ketoacyl-ACP synthase I compare
EX31_RS16645 -2.0 -1.7 DUF1471 domain-containing protein compare
EX31_RS02520 -1.9 -4.5 sigma-54-dependent Fis family transcriptional regulator compare
EX31_RS21400 -1.9 -5.4 transketolase compare
EX31_RS19610 -1.9 -7.2 4-phosphoerythronate dehydrogenase PdxB compare
EX31_RS23425 -1.9 -5.0 succinate dehydrogenase membrane anchor subunit compare
EX31_RS13815 -1.9 -1.7 ribonuclease T compare
EX31_RS18255 -1.8 -3.6 3-phosphoserine/phosphohydroxythreonine transaminase compare
EX31_RS22270 -1.8 -1.2 competence protein ComEA compare
EX31_RS09975 -1.8 -7.8 tryptophan synthase subunit beta compare
EX31_RS13935 -1.8 -10.9 phosphoenolpyruvate synthase compare
EX31_RS15150 -1.8 -7.2 class I adenylate cyclase compare
EX31_RS18540 -1.8 -2.0 cysteine/glutathione ABC transporter permease/ATP-binding protein CydD compare
EX31_RS09655 -1.8 -1.3 membrane protein compare
EX31_RS01760 -1.8 -5.8 hypothetical protein compare
EX31_RS02960 -1.7 -4.2 hypothetical protein compare
EX31_RS09855 -1.7 -3.9 orotidine-5'-phosphate decarboxylase compare
EX31_RS25340 -1.7 -4.7 hypothetical protein compare
EX31_RS19425 -1.7 -4.2 NADH-quinone oxidoreductase subunit C/D compare
EX31_RS08745 -1.7 -1.9 50S ribosomal protein L9 compare
EX31_RS09490 -1.7 -2.0 hypothetical protein compare
EX31_RS23420 -1.7 -3.3 succinate dehydrogenase cytochrome b556 subunit compare
EX31_RS23415 -1.6 -7.2 citrate synthase compare
EX31_RS10035 -1.6 -2.0 cardiolipin synthase compare
EX31_RS14340 -1.6 -1.8 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
EX31_RS00920 -1.6 -2.2 DUF1493 family protein compare
EX31_RS19375 -1.6 -3.9 NADH-quinone oxidoreductase subunit NuoN compare
EX31_RS04390 -1.5 -3.2 DNA polymerase III subunit chi compare
EX31_RS03220 -1.5 -1.9 Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC compare
EX31_RS19390 -1.5 -3.6 NADH-quinone oxidoreductase subunit NuoK compare
EX31_RS19405 -1.5 -2.9 NADH-quinone oxidoreductase subunit NuoH compare
EX31_RS24325 -1.5 -3.3 LpxL/LpxP family Kdo(2)-lipid IV(A) lauroyl/palmitoleoyl acyltransferasee compare
EX31_RS19380 -1.5 -3.8 NADH-quinone oxidoreductase subunit M compare
EX31_RS10180 -1.5 -1.4 type II 3-dehydroquinate dehydratase compare
EX31_RS22690 -1.5 -8.1 phosphoribosylglycinamide formyltransferase compare
EX31_RS19420 -1.5 -2.4 NADH-quinone oxidoreductase subunit NuoE compare
EX31_RS03400 -1.4 -4.6 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase compare
EX31_RS19410 -1.4 -5.1 NADH-quinone oxidoreductase subunit NuoG compare
EX31_RS22205 -1.4 -8.4 cytochrome o ubiquinol oxidase subunit IV compare
EX31_RS06150 -1.4 -9.9 transcriptional regulator AsnC compare
EX31_RS06060 -1.4 -3.9 phosphate ABC transporter permease PstA compare
EX31_RS22210 -1.4 -7.0 cytochrome o ubiquinol oxidase subunit III compare
EX31_RS08535 -1.4 -2.3 30S ribosome-binding factor RbfA compare
EX31_RS01615 -1.4 -2.3 DNA breaking-rejoining protein compare
EX31_RS10100 -1.4 -2.4 two-component system response regulator RssB compare
EX31_RS23880 -1.3 -2.6 DUF1471 domain-containing protein compare
EX31_RS19430 -1.3 -4.0 NADH-quinone oxidoreductase subunit B compare
EX31_RS22800 -1.3 -2.3 ArsC family reductase compare
EX31_RS03710 -1.3 -1.8 glucose uptake inhibitor SgrT compare
EX31_RS19400 -1.3 -2.7 NADH-quinone oxidoreductase subunit NuoI compare
EX31_RS25105 -1.3 -1.6 DUF2474 domain-containing protein compare
EX31_RS13495 -1.3 -4.3 FAD assembly factor SdhE compare
EX31_RS23485 -1.3 -2.1 colicin uptake protein TolR compare
EX31_RS25415 -1.3 -1.3 helix-turn-helix domain-containing protein compare
EX31_RS20265 -1.3 -2.6 YaiI/YqxD family protein compare
EX31_RS02410 -1.3 -2.1 multidrug DMT transporter compare
EX31_RS18095 -1.3 -5.3 quinone-dependent dihydroorotate dehydrogenase compare
EX31_RS09895 -1.2 -2.2 type I DNA topoisomerase compare
EX31_RS14325 -1.2 -6.7 envelope stress sensor histidine kinase CpxA compare
EX31_RS25100 -1.2 -2.3 PAAR domain-containing protein compare
EX31_RS10505 -1.2 -3.7 fatty acid metabolism transcriptional regulator FadR compare
EX31_RS15875 -1.2 -8.0 nitrogen regulation protein NR(II) compare
EX31_RS15880 -1.2 -6.6 nitrogen regulation protein NR(I) compare
EX31_RS14220 -1.2 -2.2 met regulon transcriptional regulator MetJ compare
EX31_RS22220 -1.2 -8.1 cytochrome o ubiquinol oxidase subunit II compare
EX31_RS22215 -1.2 -9.3 cytochrome o ubiquinol oxidase subunit I compare
EX31_RS06915 -1.2 -1.8 type I glyceraldehyde-3-phosphate dehydrogenase compare
EX31_RS19485 -1.2 -4.6 phosphate acetyltransferase compare
EX31_RS18625 -1.1 -2.2 heavy metal-binding domain-containing protein compare
EX31_RS10375 -1.1 -2.0 hypothetical protein compare
EX31_RS03250 -1.1 -4.9 RNA polymerase-binding protein DksA compare
EX31_RS01700 -1.1 -1.4 chromosome partitioning protein ParB compare
EX31_RS22200 -1.1 -7.2 protoheme IX farnesyltransferase compare
EX31_RS03645 -1.1 -1.6 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH compare
EX31_RS06070 -1.1 -4.9 phosphate ABC transporter substrate-binding protein PstS compare
EX31_RS24395 -1.0 -2.3 ribonuclease E compare
EX31_RS08545 -1.0 -3.7 transcription termination/antitermination protein NusA compare
EX31_RS12485 -1.0 -8.4 cell division protein ZapE conserved
EX31_RS19480 -1.0 -4.4 acetate kinase compare
EX31_RS01905 -1.0 -2.3 hypothetical protein compare
EX31_RS24945 -1.0 -2.0 5S ribosomal RNA compare
EX31_RS24645 -1.0 -2.1 DUF2591 domain-containing protein compare
EX31_RS11625 -1.0 -0.8 hypothetical protein compare
EX31_RS22145 -1.0 -1.2 phosphatidylglycerophosphatase A compare
EX31_RS01545 -1.0 -1.8 hypothetical protein compare
EX31_RS19395 -1.0 -1.9 NADH-quinone oxidoreductase subunit J compare
EX31_RS09335 -1.0 -1.6 hypothetical protein compare
EX31_RS00980 -1.0 -1.5 hypothetical protein compare
EX31_RS11355 -1.0 -1.4 chemotaxis protein CheY compare
EX31_RS02390 -1.0 -1.9 steroid Delta-isomerase compare
EX31_RS06000 -1.0 -3.3 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
EX31_RS00170 -1.0 -1.8 DUF1471 domain-containing protein compare
EX31_RS24625 -0.9 -1.1 DUF2766 domain-containing protein compare
EX31_RS04925 -0.9 -2.4 Fe-S biogenesis protein NfuA compare
EX31_RS00450 -0.9 -1.8 methionine-R-sulfoxide reductase compare
EX31_RS00220 -0.9 -3.2 Fic family protein compare
EX31_RS10025 -0.9 -2.2 hypothetical protein compare
EX31_RS05730 -0.9 -1.8 isochorismatase family protein compare
EX31_RS22275 -0.9 -1.9 YbgC/FadM family acyl-CoA thioesterase compare
EX31_RS24300 -0.9 -1.5 DUF2971 domain-containing protein compare
EX31_RS05870 -0.9 -2.4 plasmid stabilization protein compare
EX31_RS16720 -0.9 -3.0 helix-turn-helix domain-containing protein compare
EX31_RS05145 -0.9 -4.3 inorganic phosphate transporter PitA compare
EX31_RS06065 -0.9 -3.8 phosphate ABC transporter permease PstC compare
EX31_RS03310 -0.9 -2.2 hypothetical protein compare
EX31_RS09600 -0.9 -1.6 flagellar type III secretion system protein FliR compare
EX31_RS26065 -0.9 -1.3 IS630 family transposase compare
EX31_RS15920 -0.9 -2.4 YihD family protein compare
EX31_RS09940 -0.9 -4.2 23S rRNA pseudouridine(2605) synthase RluB compare
EX31_RS20930 -0.9 -1.3 hypothetical protein compare
EX31_RS01390 -0.9 -1.3 hypothetical protein compare
EX31_RS25060 -0.9 -1.9 DUF2767 family protein compare
EX31_RS02105 -0.9 -1.8 SDR family oxidoreductase compare
EX31_RS07255 -0.9 -2.4 serine hydrolase compare
EX31_RS13240 -0.8 -5.1 HTH-type transcriptional regulator GalR compare
EX31_RS19600 -0.8 -4.0 tRNA pseudouridine(38-40) synthase TruA compare
EX31_RS16685 -0.8 -2.0 3-hydroxyacyl-CoA dehydrogenase family protein compare
EX31_RS20185 -0.8 -3.8 phosphoenolpyruvate-protein phosphotransferase PtsI compare
EX31_RS22120 -0.8 -3.1 transcriptional regulator NrdR compare
EX31_RS02380 -0.8 -2.3 OsmC family protein compare
EX31_RS07520 -0.8 -1.9 ornithine cyclodeaminase compare
EX31_RS18290 -0.8 -1.7 phage tail assembly protein compare
EX31_RS20530 -0.8 -3.7 nucleoside-diphosphate kinase compare
EX31_RS14600 -0.8 -2.8 Sec-independent protein translocase subunit TatC compare
EX31_RS19415 -0.8 -1.9 NADH-quinone oxidoreductase subunit NuoF compare
EX31_RS18450 -0.8 -1.1 hypothetical protein compare
EX31_RS18535 -0.8 -3.0 thioredoxin-disulfide reductase compare
EX31_RS02135 -0.8 -1.6 antibiotic biosynthesis monooxygenase compare
EX31_RS24450 -0.8 -1.7 aminodeoxychorismate lyase compare
EX31_RS04780 -0.8 -6.2 phosphoenolpyruvate carboxykinase (ATP) compare
EX31_RS09220 -0.8 -1.2 MurR/RpiR family transcriptional regulator compare
EX31_RS24490 -0.8 -1.9 penicillin-binding protein activator LpoB compare
EX31_RS18525 -0.8 -1.8 DNA translocase FtsK compare
EX31_RS25725 -0.8 -0.8 hypothetical protein compare
EX31_RS02560 -0.8 -1.0 hypothetical protein compare
EX31_RS10210 -0.8 -2.2 4-oxalomesaconate tautomerase compare
EX31_RS00415 -0.7 -2.3 ABC transporter ATP-binding protein compare
EX31_RS23260 -0.7 -4.5 N-acetylglucosamine-6-phosphate deacetylase compare
EX31_RS07470 -0.7 -1.0 hypothetical protein compare
EX31_RS23490 -0.7 -1.1 cell envelope integrity protein TolA compare
EX31_RS09470 -0.7 -2.0 flagella biosynthesis regulatory protein FliT compare
EX31_RS25885 -0.7 -1.5 type VI secretion system baseplate subunit TssG compare
EX31_RS11690 -0.7 -1.4 dihydroneopterin triphosphate diphosphatase compare
EX31_RS03085 -0.7 -3.8 hypothetical protein compare
EX31_RS07120 -0.7 -1.8 LysR family transcriptional regulator compare
EX31_RS09100 -0.7 -1.3 uroporphyrinogen-III C-methyltransferase compare
EX31_RS19435 -0.7 -1.2 NADH-quinone oxidoreductase subunit A compare
EX31_RS06615 -0.7 -3.6 electron transport complex subunit RsxB compare
EX31_RS18145 -0.7 -3.5 aspartate/tyrosine/aromatic aminotransferase compare
EX31_RS19700 -0.7 -1.4 phosphohistidine phosphatase SixA compare
EX31_RS00625 -0.7 -0.8 YgdI/YgdR family lipoprotein compare
EX31_RS21575 -0.7 -1.1 hypothetical protein compare


Specific Phenotypes

For 12 genes in this experiment

For carbon source casamino acids in Rahnella sp. WP5

For carbon source casamino acids across organisms