Experiment set2IT090 for Rahnella sp. WP5

Compare to:

casamino acids carbon source

200 most detrimental genes:

  gene name fitness t score description  
EX31_RS02540 +3.1 12.5 helix-turn-helix transcriptional regulator compare
EX31_RS02505 +2.6 13.0 hypothetical protein compare
EX31_RS15095 +2.2 6.6 O-antigen assembly polymerase compare
EX31_RS02920 +1.8 2.1 glycosyltransferase compare
EX31_RS25645 +1.6 2.7 K(+)-transporting ATPase subunit F compare
EX31_RS14445 +1.6 8.1 glycosyltransferase family 2 protein compare
EX31_RS09080 +1.5 1.9 LysR family transcriptional regulator compare
EX31_RS07340 +1.5 2.1 stress-induced protein YchH compare
EX31_RS04645 +1.5 1.6 DUF2559 family protein compare
EX31_RS07015 +1.4 3.3 xanthine dehydrogenase accessory protein XdhC compare
EX31_RS07825 +1.3 11.5 RNA polymerase sigma factor RpoS compare
EX31_RS00315 +1.2 3.2 heme-binding protein compare
EX31_RS21020 +1.2 2.7 D-sedoheptulose 7-phosphate isomerase compare
EX31_RS01190 +1.2 3.5 hypothetical protein compare
EX31_RS19845 +1.2 2.8 DNA polymerase II small subunit compare
EX31_RS01695 +1.1 2.5 RusA family crossover junction endodeoxyribonuclease compare
EX31_RS20935 +1.1 2.7 hypothetical protein compare
EX31_RS25020 +1.1 3.3 hypothetical protein compare
EX31_RS07475 +1.1 1.6 hypothetical protein compare
EX31_RS26085 +1.1 2.3 alpha/beta hydrolase compare
EX31_RS14435 +1.0 5.6 glycosyltransferase family 4 protein compare
EX31_RS06270 +1.0 2.1 aldo/keto reductase compare
EX31_RS10835 +1.0 3.3 TolC family protein compare
EX31_RS01645 +1.0 2.9 DUF1441 family protein compare
EX31_RS04320 +1.0 2.2 hypothetical protein compare
EX31_RS16725 +1.0 2.2 phytanoyl-CoA dioxygenase compare
EX31_RS07135 +0.9 1.6 hypothetical protein compare
EX31_RS15360 +0.9 3.9 Fe-S cluster assembly protein NifU compare
EX31_RS14610 +0.9 2.7 twin-arginine translocase subunit TatE compare
EX31_RS14400 +0.9 4.1 ADP-heptose--LPS heptosyltransferase RfaF compare
EX31_RS04325 +0.9 0.9 hypothetical protein compare
EX31_RS01885 +0.9 1.8 type IV secretion protein Rhs compare
EX31_RS01650 +0.9 2.6 hypothetical protein compare
EX31_RS10535 +0.9 1.5 GtrA family protein compare
EX31_RS09535 +0.9 1.6 flagellar hook-basal body complex protein FliE compare
EX31_RS03570 +0.9 1.1 DUF721 domain-containing protein compare
EX31_RS09630 +0.8 2.9 spermidine/putrescine ABC transporter substrate-binding protein PotF compare
EX31_RS24345 +0.8 2.5 cytochrome b compare
EX31_RS01610 +0.8 2.3 phage tail protein compare
EX31_RS09710 +0.8 3.0 LysR family transcriptional regulator compare
EX31_RS17275 +0.8 1.7 DUF72 domain-containing protein compare
EX31_RS01225 +0.8 2.1 glutaredoxin-dependent arsenate reductase compare
EX31_RS17615 +0.8 2.1 hypothetical protein compare
EX31_RS25245 +0.8 2.0 late control protein B compare
EX31_RS14405 +0.8 1.4 lipopolysaccharide heptosyltransferase RfaC compare
EX31_RS02550 +0.8 3.4 MATE family efflux transporter compare
EX31_RS24065 +0.8 1.3 pyrimidine utilization flavin reductase protein F compare
EX31_RS22335 +0.7 3.1 MGMT family protein compare
EX31_RS16610 +0.7 2.9 glycosyltransferase family 2 protein compare
EX31_RS06980 +0.7 2.0 iron ABC transporter ATP-binding protein FetA compare
EX31_RS02670 +0.7 1.8 YqgE/AlgH family protein compare
EX31_RS20395 +0.7 2.0 hydroxyethylthiazole kinase compare
EX31_RS09550 +0.7 1.2 flagellar assembly protein FliH compare
EX31_RS14550 +0.7 1.1 Trk system potassium transporter TrkH compare
EX31_RS02195 +0.7 1.9 MarR family transcriptional regulator compare
EX31_RS25295 +0.7 0.8 GhoT/OrtT family toxin compare
EX31_RS25300 +0.7 0.5 YqaE/Pmp3 family membrane protein compare
EX31_RS00985 +0.7 1.9 type VI secretion protein compare
EX31_RS23125 +0.7 0.8 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH compare
EX31_RS01590 +0.7 1.7 phage tail assembly protein T compare
EX31_RS09285 +0.7 1.6 hypothetical protein compare
EX31_RS11525 +0.7 2.1 UTP--glucose-1-phosphate uridylyltransferase GalU compare
EX31_RS25595 +0.7 1.5 hypothetical protein compare
EX31_RS01480 +0.7 1.8 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD compare
EX31_RS10590 +0.7 1.3 cell division topological specificity factor MinE compare
EX31_RS23885 +0.7 1.4 DUF1471 domain-containing protein compare
EX31_RS04105 +0.7 1.2 helix-turn-helix domain-containing protein compare
EX31_RS12535 +0.7 3.6 DnaA initiator-associating protein DiaA compare
EX31_RS02310 +0.7 0.7 hypothetical protein compare
EX31_RS10995 +0.7 3.2 phenolic acid decarboxylase compare
EX31_RS01085 +0.7 1.6 ATP-binding cassette domain-containing protein compare
EX31_RS21950 +0.7 2.1 DUF1471 domain-containing protein compare
EX31_RS14730 +0.7 0.8 DUF2756 domain-containing protein compare
EX31_RS06775 +0.7 2.0 iron-containing alcohol dehydrogenase family protein compare
EX31_RS17835 +0.7 1.5 PTS transporter subunit EIIB compare
EX31_RS12600 +0.7 2.5 pilus assembly protein compare
EX31_RS06985 +0.6 1.4 iron export ABC transporter permease subunit FetB compare
EX31_RS18150 +0.6 1.9 MBL fold metallo-hydrolase compare
EX31_RS19310 +0.6 4.3 ribonucleotide-diphosphate reductase subunit beta compare
EX31_RS09645 +0.6 2.8 oxygen-insensitive NADPH nitroreductase compare
EX31_RS00905 +0.6 1.7 ester cyclase compare
EX31_RS15085 +0.6 2.2 lipid III flippase WzxE compare
EX31_RS02110 +0.6 1.3 L-rhamnose mutarotase compare
EX31_RS06940 +0.6 2.6 HD domain-containing protein compare
EX31_RS06235 +0.6 1.0 hypothetical protein compare
EX31_RS01135 +0.6 1.6 SDR family oxidoreductase compare
EX31_RS09650 +0.6 0.7 GrxA family glutaredoxin compare
EX31_RS01600 +0.6 1.3 tail fiber protein compare
EX31_RS19035 +0.6 2.9 ABC transporter ATP-binding protein compare
EX31_RS10090 +0.6 1.4 NAD-dependent epimerase compare
EX31_RS11330 +0.6 3.0 flagellar synthesis chaperone protein FlgN compare
EX31_RS11675 +0.6 1.4 Holliday junction branch migration protein RuvA compare
EX31_RS06945 +0.6 1.7 helix-turn-helix domain-containing protein compare
EX31_RS03790 +0.6 1.5 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) compare
EX31_RS24620 +0.6 1.7 YebW family protein compare
EX31_RS15460 +0.6 1.1 hypothetical protein compare
EX31_RS01690 +0.6 2.5 KilA-N domain-containing protein compare
EX31_RS07090 +0.6 1.8 YnfA family protein compare
EX31_RS25470 +0.6 2.0 LysR family transcriptional regulator compare
EX31_RS25225 +0.6 1.5 hypothetical protein compare
EX31_RS18015 +0.6 3.2 DNA helicase IV compare
EX31_RS02130 +0.6 1.6 amino acid-binding protein compare
EX31_RS24665 +0.6 3.5 transcription antiterminator/RNA stability regulator CspE compare
EX31_RS07125 +0.6 1.9 LLM class flavin-dependent oxidoreductase compare
EX31_RS24630 +0.6 2.3 membrane protein compare
EX31_RS18970 +0.5 1.9 DksA/TraR family C4-type zinc finger protein compare
EX31_RS01315 +0.5 2.1 Na/Pi cotransporter family protein compare
EX31_RS14410 +0.5 4.8 glycosyltransferase family 9 protein compare
EX31_RS11490 +0.5 2.1 glycosyltransferase compare
EX31_RS17295 +0.5 1.2 hypothetical protein compare
EX31_RS24820 +0.5 2.9 amidohydrolase compare
EX31_RS14415 +0.5 2.6 sugar glycosyltransferase compare
EX31_RS21985 +0.5 1.9 pyrimidine/purine nucleoside phosphorylase compare
EX31_RS25685 +0.5 3.1 DUF2627 domain-containing protein compare
EX31_RS07360 +0.5 1.8 protease modulator HflC compare
EX31_RS06685 +0.5 3.0 cellulose biosynthesis protein BcsE compare
EX31_RS11500 +0.5 0.9 glycosyltransferase family 2 protein compare
EX31_RS01255 +0.5 1.5 Crp/Fnr family transcriptional regulator compare
EX31_RS09210 +0.5 1.6 hypothetical protein compare
EX31_RS15530 +0.5 0.6 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit compare
EX31_RS01490 +0.5 2.3 efflux RND transporter periplasmic adaptor subunit compare
EX31_RS02765 +0.5 1.3 acetyltransferase compare
EX31_RS06800 +0.5 1.5 ABC transporter permease compare
EX31_RS18045 +0.5 1.3 macrodomain Ter protein MatP compare
EX31_RS22585 +0.5 2.2 NfeD family protein compare
EX31_RS01920 +0.5 1.3 hypothetical protein compare
EX31_RS19755 +0.5 2.0 heme exporter protein CcmD compare
EX31_RS10865 +0.5 1.2 hypothetical protein compare
EX31_RS22855 +0.5 2.8 toxin CbtA compare
EX31_RS10640 +0.5 2.2 pyruvate kinase compare
EX31_RS00640 +0.5 2.3 FMN-dependent L-lactate dehydrogenase LldD compare
EX31_RS15595 +0.5 1.5 MetQ/NlpA family lipoprotein compare
EX31_RS24390 +0.5 1.2 antibiotic biosynthesis monooxygenase compare
EX31_RS01780 +0.5 1.5 hypothetical protein compare
EX31_RS21440 +0.5 1.3 arginine exporter ArgO compare
EX31_RS07215 +0.5 1.6 Re/Si-specific NAD(P)(+) transhydrogenase subunit alpha compare
EX31_RS17085 +0.5 1.8 integrase compare
EX31_RS23990 +0.5 0.8 SDR family NAD(P)-dependent oxidoreductase compare
EX31_RS24140 +0.5 0.7 DUF2594 family protein compare
EX31_RS24220 +0.5 0.5 hypothetical protein compare
EX31_RS17795 +0.5 1.8 citrate (pro-3S)-lyase subunit beta compare
EX31_RS05590 +0.5 2.1 organic hydroperoxide resistance protein compare
EX31_RS21805 +0.5 1.1 anti-sigma-E factor RseA compare
EX31_RS23725 +0.5 1.4 DUF2132 domain-containing protein compare
EX31_RS05880 +0.5 1.1 DNA-3-methyladenine glycosylase I compare
EX31_RS06565 +0.5 1.5 Ni(II)/Co(II)-binding transcriptional repressor RcnR compare
EX31_RS25135 +0.5 1.2 hypothetical protein compare
EX31_RS09755 +0.5 1.8 xylose ABC transporter ATP-binding protein compare
EX31_RS02955 +0.5 2.1 YjbF family lipoprotein compare
EX31_RS23675 +0.5 2.6 ABC transporter substrate-binding protein compare
EX31_RS22965 +0.5 2.3 DUF2461 domain-containing protein compare
EX31_RS10430 +0.5 1.6 5-oxoprolinase subunit PxpB compare
EX31_RS22880 +0.5 1.4 DUF945 domain-containing protein compare
EX31_RS23745 +0.5 2.0 molybdenum cofactor biosynthesis protein B compare
EX31_RS15055 +0.5 4.1 UDP-N-acetylglucosamine--undecaprenyl-phosphate N-acetylglucosaminephosphotransferase compare
EX31_RS22740 +0.5 3.0 4-hydroxy-tetrahydrodipicolinate synthase compare
EX31_RS09615 +0.5 2.2 putrescine ABC transporter permease PotI compare
EX31_RS22665 +0.5 1.5 DUF2633 family protein compare
EX31_RS06570 +0.5 1.7 nickel/cobalt efflux protein RcnA compare
EX31_RS14000 +0.5 3.3 lipid IV(A) 4-amino-4-deoxy-L-arabinosyltransferase compare
EX31_RS17475 +0.5 1.6 SDR family oxidoreductase compare
EX31_RS20985 +0.5 3.1 sigma factor-binding protein Crl compare
EX31_RS06990 +0.5 1.1 GntR family transcriptional regulator compare
EX31_RS01705 +0.5 2.5 site-specific DNA-methyltransferase compare
EX31_RS02695 +0.5 1.6 YggT family protein compare
EX31_RS07180 +0.5 1.3 DNA endonuclease SmrA compare
EX31_RS24770 +0.5 1.3 copper homeostasis periplasmic binding protein CopC compare
EX31_RS07430 +0.5 1.3 transporter substrate-binding domain-containing protein compare
EX31_RS06885 +0.4 1.2 NAD(P)-dependent oxidoreductase compare
EX31_RS01465 +0.4 2.3 oligogalacturonate lyase compare
EX31_RS03315 +0.4 1.6 type VI secretion system tube protein Hcp compare
EX31_RS01580 +0.4 1.0 phage tail protein compare
EX31_RS25895 +0.4 0.9 DinI-like family protein compare
EX31_RS14770 +0.4 1.6 hypothetical protein compare
EX31_RS16670 +0.4 1.4 NAD(P)-dependent alcohol dehydrogenase compare
EX31_RS23715 +0.4 2.2 ATP-binding cassette domain-containing protein compare
EX31_RS19995 +0.4 3.1 curli production assembly/transport protein CsgG compare
EX31_RS11345 +0.4 2.2 flagellar type III secretion system protein FlhB compare
EX31_RS07865 +0.4 2.6 DUF3561 family protein compare
EX31_RS09695 +0.4 2.1 D-alanyl-D-alanine carboxypeptidase compare
EX31_RS11205 +0.4 1.7 chemotaxis protein CheV compare
EX31_RS03850 +0.4 2.2 SMP-30/gluconolactonase/LRE family protein compare
EX31_RS17785 +0.4 1.6 [citrate (pro-3S)-lyase] ligase compare
EX31_RS07665 +0.4 2.4 phage tail protein I compare
EX31_RS01865 +0.4 2.0 DotU family type IV/VI secretion system protein compare
EX31_RS14210 +0.4 3.7 bifunctional aspartate kinase/homoserine dehydrogenase II compare
EX31_RS24365 +0.4 1.7 response regulator transcription factor compare
EX31_RS10310 +0.4 2.2 2-hydroxyacid dehydrogenase compare
EX31_RS18585 +0.4 2.4 lysine exporter LysO family protein compare
EX31_RS07290 +0.4 1.9 C4-dicarboxylic acid transporter DauA compare
EX31_RS03395 +0.4 1.8 YacL family protein compare
EX31_RS09885 +0.4 2.4 aconitate hydratase AcnA compare
EX31_RS02235 +0.4 0.7 helix-turn-helix transcriptional regulator compare
EX31_RS09665 +0.4 1.2 hypothetical protein compare
EX31_RS01660 +0.4 1.3 hypothetical protein compare
EX31_RS12540 +0.4 1.2 YraN family protein compare
EX31_RS15680 +0.4 1.4 envelope stress response membrane protein PspB compare
EX31_RS07745 +0.4 1.3 S-ribosylhomocysteine lyase compare
EX31_RS20535 +0.4 1.5 enhanced serine sensitivity protein SseB compare
EX31_RS17850 +0.4 2.4 sugar ABC transporter permease compare


Specific Phenotypes

For 12 genes in this experiment

For carbon source casamino acids in Rahnella sp. WP5

For carbon source casamino acids across organisms