Experiment set2IT090 for Methanococcus maripaludis JJ

Compare to:

Formate McCas, 2.5g/L bicarb, 200 mM MOPs, 20 psi N2CO2, SO4 FREE

200 most important genes:

  gene name fitness t score description  
MMJJ_RS04200 -4.1 -7.8 triphosphoribosyl-dephospho-CoA synthase compare
MMJJ_RS01880 -4.0 -3.8 RlmE family RNA methyltransferase compare
MMJJ_RS03865 -3.8 -2.2 phosphoribosyl-AMP cyclohydrolase compare
MMJJ_RS05620 -3.8 -3.6 CoB--CoM heterodisulfide reductase iron-sulfur subunit A family protein compare
MMJJ_RS06840 -3.6 -3.5 nickel-dependent hydrogenase large subunit compare
MMJJ_RS07670 -3.6 -19.4 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C-terminal domain compare
MMJJ_RS07665 -3.5 -23.9 formate dehydrogenase subunit alpha compare
MMJJ_RS03895 -3.5 -5.2 hydrogenase expression/formation protein HypE compare
MMJJ_RS01935 -3.4 -5.6 O-phosphoseryl-tRNA(Sec) selenium transferase compare
MMJJ_RS01600 -3.4 -3.9 radical SAM protein compare
MMJJ_RS04730 -3.3 -3.9 tyrosine decarboxylase MfnA compare
MMJJ_RS07360 -3.3 -2.9 TIGR00269 family protein compare
MMJJ_RS05415 -3.3 -3.1 hypothetical protein compare
MMJJ_RS05935 -3.3 -3.1 Era-like GTP-binding protein compare
MMJJ_RS07655 -3.2 -14.9 hypothetical protein compare
MMJJ_RS03840 -3.2 -4.3 DHH family phosphoesterase compare
MMJJ_RS08020 -3.2 -10.5 nucleotidyltransferase domain-containing protein compare
MMJJ_RS07720 -3.2 -3.6 UPF0058 family protein compare
MMJJ_RS07950 -3.1 -4.7 4Fe-4S binding protein compare
MMJJ_RS08005 -3.1 -18.3 formate dehydrogenase accessory sulfurtransferase FdhD compare
MMJJ_RS06750 -3.1 -4.1 homoaconitase large subunit compare
MMJJ_RS00355 -3.1 -4.1 ribonuclease P protein component 4 compare
MMJJ_RS05380 -3.0 -2.4 hypothetical protein compare
MMJJ_RS03055 -3.0 -4.9 hypothetical protein compare
MMJJ_RS06700 -3.0 -7.2 L-seryl-tRNA(Sec) kinase compare
MMJJ_RS01750 -2.9 -4.3 ferrous iron transport protein A compare
MMJJ_RS08625 -2.9 -8.8 magnesium/cobalt transporter CorA compare
MMJJ_RS03200 -2.9 -3.8 uroporphyrinogen-III synthase compare
MMJJ_RS06625 -2.9 -3.3 pyruvate synthase subunit PorB compare
MMJJ_RS05930 -2.8 -1.9 cell division protein SepF compare
MMJJ_RS05610 -2.8 -5.3 CDP-2,3-bis-(O-geranylgeranyl)-sn-glycerol synthase compare
MMJJ_RS04475 -2.8 -5.7 3,4-dihydroxy-2-butanone-4-phosphate synthase compare
MMJJ_RS00275 -2.8 -3.5 coenzyme F420-0:L-glutamate ligase compare
MMJJ_RS00580 -2.8 -3.5 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase subunit CofG compare
MMJJ_RS06180 -2.8 -3.7 tryptophan--tRNA ligase compare
MMJJ_RS00370 -2.8 -2.4 asparagine synthase (glutamine-hydrolyzing) compare
MMJJ_RS06490 -2.8 -3.7 methanogenesis marker 2 protein compare
MMJJ_RS03580 -2.8 -4.1 TIGR00303 family protein compare
MMJJ_RS02200 -2.7 -9.4 chorismate pyruvate-lyase family protein compare
MMJJ_RS07705 -2.7 -3.2 GTP-binding protein EngB compare
MMJJ_RS03760 -2.7 -4.0 hydrogenase maturation nickel metallochaperone HypA compare
MMJJ_RS02920 -2.7 -3.5 30S ribosomal protein S27ae compare
MMJJ_RS03620 -2.7 -7.1 DUF2097 domain-containing protein compare
MMJJ_RS02045 -2.7 -4.3 molybdenum cofactor guanylyltransferase compare
MMJJ_RS03670 -2.7 -5.0 precorrin-2 C(20)-methyltransferase compare
MMJJ_RS05650 -2.7 -3.7 formylmethanofuran dehydrogenase subunit B compare
MMJJ_RS00600 -2.6 -3.9 hydroxymethylbilane synthase compare
MMJJ_RS03785 -2.6 -3.5 hypothetical protein compare
MMJJ_RS07660 -2.6 -10.7 carbonic anhydrase compare
MMJJ_RS07650 -2.6 -19.0 formate/nitrite transporter family protein compare
MMJJ_RS00475 -2.6 -3.4 bifunctional ornithine acetyltransferase/N-acetylglutamate synthase compare
MMJJ_RS04155 -2.6 -7.1 hypothetical protein compare
MMJJ_RS04485 -2.6 -10.8 riboflavin synthase compare
MMJJ_RS02040 -2.6 -3.5 Asp-tRNA(Asn) amidotransferase subunit GatC compare
MMJJ_RS06255 -2.5 -8.1 tRNA uridine(34) 5-carboxymethylaminomethyl modification radical SAM/GNAT enzyme Elp3 compare
MMJJ_RS06295 -2.5 -10.9 DUF2096 family protein compare
MMJJ_RS08080 -2.5 -11.2 TIGR00300 family protein compare
MMJJ_RS08065 -2.5 -4.0 precorrin-6Y C5,15-methyltransferase (decarboxylating) subunit CbiT compare
MMJJ_RS03110 -2.5 -3.7 tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))- methylthiotransferase compare
MMJJ_RS05490 -2.5 -3.7 imidazole glycerol phosphate synthase subunit HisF compare
MMJJ_RS03065 -2.5 -15.7 CBS domain-containing protein compare
MMJJ_RS06860 -2.5 -3.7 hypothetical protein compare
MMJJ_RS03270 -2.5 -3.0 ribosome biogenesis/translation initiation ATPase RLI compare
MMJJ_RS00210 -2.5 -2.8 DUF530 family protein compare
MMJJ_RS05535 -2.5 -12.8 hypothetical protein compare
MMJJ_RS08055 -2.5 -7.5 methanogenesis marker 14 protein compare
MMJJ_RS07640 -2.4 -20.0 cache domain-containing protein compare
MMJJ_RS03005 -2.4 -4.1 Ni-sirohydrochlorin a,c-diamide reductive cyclase catalytic subunit compare
MMJJ_RS04685 -2.4 -10.3 carbamoyltransferase HypF compare
MMJJ_RS08095 -2.4 -4.4 cobyric acid synthase CobQ compare
MMJJ_RS06725 -2.4 -13.9 MogA/MoaB family molybdenum cofactor biosynthesis protein compare
MMJJ_RS04995 -2.4 -6.6 Tfx family DNA-binding protein compare
MMJJ_RS05260 -2.4 -5.6 ATP-grasp domain-containing protein compare
MMJJ_RS04800 -2.4 -6.6 2-phospho-L-lactate guanylyltransferase compare
MMJJ_RS03615 -2.4 -3.2 cobalt-precorrin-8 methylmutase compare
MMJJ_RS06510 -2.4 -4.2 LL-diaminopimelate aminotransferase compare
MMJJ_RS04595 -2.3 -5.2 hypothetical protein compare
MMJJ_RS06695 -2.3 -4.3 amidohydrolase compare
MMJJ_RS03500 -2.3 -12.8 F420-dependent methylenetetrahydromethanopterin dehydrogenase compare
MMJJ_RS05155 -2.3 -6.3 5-amino-6-(D-ribitylamino)uracil--L-tyrosine 4-hydroxyphenyl transferase CofH compare
MMJJ_RS03190 -2.3 -3.7 phosphopyruvate hydratase compare
MMJJ_RS02055 -2.3 -12.6 GTP 3',8-cyclase MoaA compare
MMJJ_RS03150 -2.3 -6.4 2-phospho-L-lactate transferase compare
MMJJ_RS07345 -2.3 -7.1 homocysteine biosynthesis protein compare
MMJJ_RS03875 -2.2 -4.9 CBS domain-containing protein compare
MMJJ_RS05370 -2.2 -11.2 LysR family transcriptional regulator compare
MMJJ_RS07635 -2.2 -13.5 response regulator transcription factor compare
MMJJ_RS01755 -2.2 -3.2 ferrous iron transport protein B compare
MMJJ_RS08855 -2.2 -7.3 cyclic pyranopterin monophosphate synthase MoaC compare
MMJJ_RS00360 -2.2 -3.2 adenosylhomocysteinase compare
MMJJ_RS06485 -2.2 -3.5 phosphoglycerate kinase compare
MMJJ_RS07725 -2.2 -7.4 DNA primase DnaG compare
MMJJ_RS03820 -2.2 -3.8 hydrogenase formation protein HypD compare
MMJJ_RS07995 -2.2 -6.0 molybdenum cofactor biosynthesis protein MoaE compare
MMJJ_RS00205 -2.2 -6.0 adenosylcobinamide-phosphate synthase CbiB compare
MMJJ_RS05590 -2.2 -2.7 homoserine dehydrogenase compare
MMJJ_RS00195 -2.2 -3.7 precorrin-3B C(17)-methyltransferase compare
MMJJ_RS06225 -2.1 -2.8 adenosylmethionine decarboxylase compare
MMJJ_RS04700 -2.1 -7.0 deoxyhypusine synthase compare
MMJJ_RS09175 -2.1 -1.2 anthranilate synthase component I compare
MMJJ_RS02190 -2.1 -14.6 molybdopterin biosynthesis protein compare
MMJJ_RS03965 -2.1 -2.8 DNA-directed RNA polymerase subunit L compare
MMJJ_RS07945 -2.1 -3.6 4Fe-4S binding protein compare
MMJJ_RS09130 -2.1 -2.7 NFYB/HAP3 family transcription factor subunit compare
MMJJ_RS05330 -2.1 -2.7 DNA polymerase II large subunit compare
MMJJ_RS05810 -2.1 -6.1 precorrin-4 C(11)-methyltransferase compare
MMJJ_RS06050 -2.0 -10.4 molybdopterin molybdotransferase MoeA compare
MMJJ_RS05950 -2.0 -3.6 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase compare
MMJJ_RS07000 -2.0 -1.8 TrkH family potassium uptake protein compare
MMJJ_RS04655 -2.0 -5.0 FAD-dependent oxidoreductase compare
MMJJ_RS08155 -2.0 -4.9 cobalt-precorrin-5B (C(1))-methyltransferase CbiD compare
MMJJ_RS06915 -2.0 -11.7 helix-turn-helix domain-containing protein compare
MMJJ_RS08035 -2.0 -8.0 cobalt-precorrin-7 (C(5))-methyltransferase compare
MMJJ_RS07350 -2.0 -4.2 4Fe-4S binding protein compare
MMJJ_RS05575 -2.0 -4.9 2-amino-5-formylamino-6-ribosylaminopyrimidin- 4(3H)-one 5'-monophosphate deformylase compare
MMJJ_RS06390 -2.0 -2.6 NADPH-dependent F420 reductase compare
MMJJ_RS03115 -2.0 -8.0 sulfopyruvate decarboxylase subunit alpha compare
MMJJ_RS00450 -2.0 -2.3 DUF126 domain-containing protein compare
MMJJ_RS07875 -2.0 -2.6 FAD-dependent oxidoreductase compare
MMJJ_RS05540 -1.9 -13.2 LysR family transcriptional regulator compare
MMJJ_RS04520 -1.9 -4.7 coenzyme F430 synthase compare
MMJJ_RS06240 -1.9 -3.3 dihydropteroate synthase-like protein compare
MMJJ_RS06910 -1.9 -4.1 energy-converting NiFe hydrogenase A subunit EhaA compare
MMJJ_RS09375 -1.9 -2.0 hypothetical protein compare
MMJJ_RS02275 -1.9 -3.6 nucleotidyltransferase domain-containing protein compare
MMJJ_RS03125 -1.9 -3.7 GMC oxidoreductase compare
MMJJ_RS03295 -1.9 -11.9 PHP domain-containing protein compare
MMJJ_RS08000 -1.9 -9.3 HesA/MoeB/ThiF family protein compare
MMJJ_RS06220 -1.9 -5.5 polyamine aminopropyltransferase compare
MMJJ_RS01415 -1.9 -2.9 beta-CASP ribonuclease aCPSF1 compare
MMJJ_RS02090 -1.8 -5.1 tyramine--L-glutamate ligase compare
MMJJ_RS03845 -1.8 -3.2 translation initiation factor IF-2 compare
MMJJ_RS08335 -1.8 -1.9 ABC transporter ATP-binding protein compare
MMJJ_RS04675 -1.8 -6.8 thiamine pyrophosphate-binding protein compare
MMJJ_RS06175 -1.8 -1.8 DUF1743 domain-containing protein compare
MMJJ_RS06155 -1.8 -5.7 phosphatidylglycerophosphatase A compare
MMJJ_RS08010 -1.8 -7.1 phosphoadenosine phosphosulfate reductase family protein compare
MMJJ_RS07245 -1.8 -4.1 amidohydrolase family protein compare
MMJJ_RS07470 -1.8 -3.0 50S ribosome-binding GTPase compare
MMJJ_RS03170 -1.8 -7.2 DUF5612 domain-containing protein compare
MMJJ_RS03095 -1.8 -2.7 bifunctional N(6)-L-threonylcarbamoyladenine synthase/serine/threonine protein kinase compare
MMJJ_RS06855 -1.8 -1.9 DUF2104 domain-containing protein compare
MMJJ_RS07980 -1.7 -9.2 biotin synthase BioB compare
MMJJ_RS05445 -1.7 -2.0 2-oxoacid:acceptor oxidoreductase subunit alpha compare
MMJJ_RS05070 -1.7 -2.7 DNA primase catalytic subunit PriS compare
MMJJ_RS01870 -1.7 -2.1 methanogenesis marker 15 protein compare
MMJJ_RS01345 -1.7 -3.6 (5-formylfuran-3-yl)methyl phosphate synthase compare
MMJJ_RS00645 -1.7 -10.2 adenosylmethionine--8-amino-7-oxononanoate transaminase compare
MMJJ_RS08340 -1.7 -4.9 archaeoflavoprotein AfpA compare
MMJJ_RS07190 -1.7 -4.1 RtcB family protein compare
MMJJ_RS02935 -1.7 -2.8 DNA-directed RNA polymerase subunit E'' compare
MMJJ_RS05295 -1.7 -8.9 cobyrinic acid a,c-diamide synthase compare
MMJJ_RS07155 -1.7 -8.2 [5-(aminomethyl)furan-3-yl]methyl phosphate kinase compare
MMJJ_RS00215 -1.7 -2.6 CCA tRNA nucleotidyltransferase compare
MMJJ_RS04150 -1.7 -3.5 DUF5379 domain-containing protein compare
MMJJ_RS05655 -1.7 -6.0 HisA/HisF family protein compare
MMJJ_RS08795 -1.7 -2.4 phosphoglucosamine mutase compare
MMJJ_RS02035 -1.7 -7.2 4-hydroxy-tetrahydrodipicolinate synthase compare
MMJJ_RS06270 -1.7 -8.4 dethiobiotin synthase compare
MMJJ_RS07430 -1.6 -2.3 ribonuclease VapC compare
MMJJ_RS07355 -1.6 -6.0 MoaD/ThiS family protein compare
MMJJ_RS00560 -1.6 -3.3 homoisocitrate dehydrogenase compare
MMJJ_RS01200 -1.6 -2.9 PRC-barrel domain-containing protein compare
MMJJ_RS04145 -1.6 -7.2 glutamate-1-semialdehyde 2,1-aminomutase compare
MMJJ_RS07785 -1.6 -2.5 fumarate reductase subunit A compare
MMJJ_RS08250 -1.6 -5.5 hydrogenase maturation peptidase HycI compare
MMJJ_RS05065 -1.6 -4.0 (4-{4-[2-(gamma-L- glutamylamino)ethyl]phenoxymethyl}furan-2-yl)methanamine synthase compare
MMJJ_RS08660 -1.6 -3.0 acetylornithine transaminase compare
MMJJ_RS06600 -1.6 -3.3 DUF555 domain-containing protein compare
MMJJ_RS00045 -1.6 -11.0 CO dehydrogenase/CO-methylating acetyl-CoA synthase complex subunit beta compare
MMJJ_RS08535 -1.6 -3.0 NOL1/NOP2/sun family putative RNA methylase compare
MMJJ_RS04670 -1.6 -4.0 DUF2117 domain-containing protein compare
MMJJ_RS00550 -1.6 -7.3 AIR synthase-related protein compare
MMJJ_RS08330 -1.6 -2.2 SufD family Fe-S cluster assembly protein compare
MMJJ_RS06905 -1.6 -1.9 hypothetical protein compare
MMJJ_RS01690 -1.6 -3.2 methanogenesis marker 12 protein compare
MMJJ_RS06760 -1.6 -4.0 Ni-sirohydrochlorin a,c-diamide synthase compare
MMJJ_RS06185 -1.6 -3.9 cobalamin biosynthesis protein compare
MMJJ_RS01350 -1.6 -5.7 sodium:proton antiporter compare
MMJJ_RS04980 -1.6 -3.4 bifunctional precorrin-2 dehydrogenase/sirohydrochlorin ferrochelatase compare
MMJJ_RS07410 -1.5 -4.0 methanogenesis marker protein Mmp4/MtxX compare
MMJJ_RS06875 -1.5 -2.4 hypothetical protein compare
MMJJ_RS05225 -1.5 -1.3 Gar1/Naf1 family protein compare
MMJJ_RS05780 -1.5 -3.0 flagellin compare
MMJJ_RS09135 -1.5 -5.8 archaeosine biosynthesis radical SAM protein RaSEA compare
MMJJ_RS06865 -1.5 -2.0 NADH-quinone oxidoreductase subunit H compare
MMJJ_RS01830 -1.5 -3.0 tRNA(Ile)(2)-agmatinylcytidine synthase compare
MMJJ_RS00035 -1.5 -11.8 CO dehydrogenase/acetyl-CoA synthase complex subunit alpha compare
MMJJ_RS06040 -1.5 -3.6 NADH-quinone oxidoreductase subunit H compare
MMJJ_RS03140 -1.4 -8.3 tRNA-dihydrouridine synthase compare
MMJJ_RS03490 -1.4 -3.0 ribonuclease VapC compare
MMJJ_RS08620 -1.4 -2.9 DUF373 family protein compare
MMJJ_RS01810 -1.4 -2.0 methyl coenzyme M reductase system, component A2 compare
MMJJ_RS05190 -1.4 -6.4 gamma carbonic anhydrase family protein compare
MMJJ_RS04975 -1.4 -2.1 glycosyltransferase family 4 protein compare
MMJJ_RS06030 -1.4 -4.0 4Fe-4S binding protein compare
MMJJ_RS06785 -1.4 -6.6 RNA ligase partner protein compare
MMJJ_RS08480 -1.4 -5.7 hydroxyethylthiazole kinase compare
MMJJ_RS00060 -1.4 -10.6 acetyl-CoA decarbonylase/synthase complex subunit gamma compare
MMJJ_RS03245 -1.4 -2.1 UMP kinase compare


Specific Phenotypes

None in this experiment

For Methanococcus maripaludis JJ in rich t1 experiments