Experiment set2IT090 for Pantoea sp. MT58

Compare to:

Aluminum potassium sulfate dodecahydrate 1 mM, anaerobic

200 most detrimental genes:

  gene name fitness t score description  
IAI47_13740 +2.1 2.0 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase compare
IAI47_06940 +1.9 1.7 tyrosine-protein kinase Wzc compare
IAI47_00670 +1.7 16.0 sugar glycosyltransferase compare
IAI47_03645 +1.7 15.5 O-antigen ligase family protein compare
IAI47_03640 +1.6 13.8 glycosyltransferase compare
IAI47_10825 +1.5 2.1 tRNA-Val compare
IAI47_18470 +1.5 13.1 ECA oligosaccharide polymerase compare
IAI47_18490 +1.5 5.6 dTDP-4-amino-4,6-dideoxy-D-galactose acyltransferase compare
IAI47_18480 +1.4 10.2 lipid III flippase WzxE compare
IAI47_05765 +1.1 3.3 hypothetical protein compare
IAI47_21595 +1.1 6.2 4-amino-4-deoxy-L-arabinose-phospho-UDP flippase compare
IAI47_21530 +1.0 3.6 FeoA domain-containing protein compare
IAI47_04705 +1.0 1.9 hypothetical protein compare
IAI47_00675 +1.0 8.7 glycosyltransferase family 9 protein compare
IAI47_07020 +1.0 1.8 hypothetical protein compare
IAI47_21605 +0.9 7.2 lipid IV(A) 4-amino-4-deoxy-L-arabinosyltransferase compare
IAI47_08035 +0.9 2.6 flagellar hook-basal body complex protein FliE compare
IAI47_07000 +0.9 6.5 UDP-glucose 4-epimerase GalE compare
IAI47_06470 +0.9 7.1 two-component system sensor histidine kinase RcsC compare
IAI47_18465 +0.9 6.3 lipopolysaccharide N-acetylmannosaminouronosyltransferase compare
IAI47_08010 +0.9 4.7 flagella biosynthesis chaperone FliJ compare
IAI47_07015 +0.9 4.1 ABC transporter ATP-binding protein compare
IAI47_21355 +0.8 1.7 DUF3606 domain-containing protein compare
IAI47_10845 +0.8 2.3 major outer membrane lipoprotein compare
IAI47_02845 +0.8 6.8 penicillin-binding protein activator compare
IAI47_07475 +0.8 0.5 hypothetical protein compare
IAI47_08025 +0.8 4.3 flagellar motor switch protein FliG compare
IAI47_07905 +0.8 0.9 Arc family DNA-binding protein compare
IAI47_07990 +0.8 3.2 flagellar motor switch protein FliN compare
IAI47_01545 +0.8 3.9 cell division ATP-binding protein FtsE compare
IAI47_21610 +0.8 4.9 4-deoxy-4-formamido-L-arabinose- phosphoundecaprenol deformylase compare
IAI47_13415 +0.7 5.8 L,D-transpeptidase family protein compare
IAI47_06965 +0.7 1.0 glycosyltransferase family 2 protein compare
IAI47_12140 +0.7 4.0 flagellar basal-body rod protein FlgG compare
IAI47_06565 +0.7 1.0 YejL family protein compare
IAI47_15025 +0.7 1.7 transcriptional regulator LldR compare
IAI47_18475 +0.7 4.7 TDP-N-acetylfucosamine:lipid II N-acetylfucosaminyltransferase compare
IAI47_08160 +0.7 4.7 RNA polymerase sigma factor FliA compare
IAI47_11425 +0.7 2.4 hypothetical protein compare
IAI47_01860 +0.7 6.4 peptidoglycan glycosyltransferase/peptidoglycan DD-transpeptidase MrcA compare
IAI47_07550 +0.7 0.8 tRNA-Asn compare
IAI47_05465 +0.7 2.6 bile acid:sodium symporter compare
IAI47_18510 +0.7 4.7 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
IAI47_21730 +0.7 2.5 hypothetical protein compare
IAI47_20640 +0.7 2.8 hypothetical protein compare
IAI47_12150 +0.7 5.4 flagellar hook protein FlgE compare
IAI47_08280 +0.7 4.2 flagellar transcriptional regulator FlhD compare
IAI47_18505 +0.7 3.9 UDP-N-acetyl-D-mannosamine dehydrogenase compare
IAI47_07880 +0.7 2.8 hypothetical protein compare
IAI47_09360 +0.7 0.6 peptide ABC transporter ATP-binding protein SapF compare
IAI47_06455 +0.7 2.8 ribonucleoside-diphosphate reductase subunit alpha compare
IAI47_06360 +0.7 1.1 NADH-quinone oxidoreductase subunit A compare
IAI47_09235 +0.7 1.0 type I DNA topoisomerase compare
IAI47_21600 +0.6 1.3 EamA family transporter compare
IAI47_08285 +0.6 4.7 flagellar transcriptional regulator FlhC compare
IAI47_10430 +0.6 2.2 hypothetical protein compare
IAI47_13750 +0.6 1.8 succinate dehydrogenase iron-sulfur subunit compare
IAI47_14695 +0.6 2.6 cytochrome o ubiquinol oxidase subunit IV compare
IAI47_11550 +0.6 1.3 hypothetical protein compare
IAI47_18985 +0.6 2.4 MarR family transcriptional regulator compare
IAI47_12160 +0.6 4.1 flagellar basal body rod protein FlgC compare
IAI47_15600 +0.6 1.3 Fe(3+)-hydroxamate ABC transporter substrate-binding protein FhuD compare
IAI47_08030 +0.6 4.6 flagellar M-ring protein FliF compare
IAI47_14680 +0.6 2.8 cytochrome o ubiquinol oxidase subunit II compare
IAI47_12135 +0.6 4.7 flagellar basal body L-ring protein FlgH compare
IAI47_08015 +0.6 3.7 flagellum-specific ATP synthase FliI compare
IAI47_07980 +0.6 3.6 flagellar type III secretion system pore protein FliP compare
IAI47_06445 +0.6 2.9 2Fe-2S ferredoxin-like protein compare
IAI47_10285 +0.6 3.4 SrfC compare
IAI47_08745 +0.6 1.2 transcription antiterminator/RNA stability regulator CspE compare
IAI47_18495 +0.6 3.4 glucose-1-phosphate thymidylyltransferase RfbA compare
IAI47_05400 +0.6 3.3 sulfate/thiosulfate ABC transporter ATP-binding protein CysA compare
IAI47_12155 +0.6 4.0 flagellar hook assembly protein FlgD compare
IAI47_12130 +0.6 4.2 flagellar basal body P-ring protein FlgI compare
IAI47_09400 +0.5 1.2 envelope stress response membrane protein PspB compare
IAI47_08345 +0.5 4.1 flagellar type III secretion system protein FlhB compare
IAI47_04750 +0.5 1.6 hypothetical protein compare
IAI47_21640 +0.5 2.5 sigma-70 family RNA polymerase sigma factor compare
IAI47_08670 +0.5 1.8 DUF1272 domain-containing protein compare
IAI47_06480 +0.5 3.9 phosphotransferase RcsD compare
IAI47_06690 +0.5 3.0 iron ABC transporter permease compare
IAI47_13675 +0.5 3.3 cell division protein CpoB compare
IAI47_18485 +0.5 3.8 dTDP-4-amino-4,6-dideoxygalactose transaminase compare
IAI47_18065 +0.5 2.4 deoxyribonuclease V compare
IAI47_17980 +0.5 2.7 capsule biosynthesis GfcC family protein compare
IAI47_15975 +0.5 2.4 division/cell wall cluster transcriptional repressor MraZ compare
IAI47_17075 +0.5 1.6 ribosome assembly RNA-binding protein YhbY compare
IAI47_02385 +0.5 3.4 tRNA dihydrouridine synthase DusB compare
IAI47_05185 +0.5 2.3 uracil phosphoribosyltransferase compare
IAI47_08610 +0.5 2.2 tail fiber assembly protein compare
IAI47_13265 +0.5 1.3 HutD family protein compare
IAI47_05385 +0.5 4.0 sulfate ABC transporter substrate-binding protein compare
IAI47_08145 +0.5 4.1 flagellin FliC compare
IAI47_11745 +0.5 2.8 phosphatase compare
IAI47_08000 +0.5 2.7 flagellar basal body-associated protein FliL compare
IAI47_12145 +0.5 2.7 flagellar basal body rod protein FlgF compare
IAI47_07910 +0.5 3.4 DNA (cytosine-5-)-methyltransferase compare
IAI47_12165 +0.5 2.7 flagellar basal body rod protein FlgB compare
IAI47_08700 +0.5 2.6 RNA chaperone ProQ compare
IAI47_21505 +0.5 1.9 DUF2256 domain-containing protein compare
IAI47_06400 +0.5 1.0 NADH-quinone oxidoreductase subunit J compare
IAI47_06230 +0.5 1.9 hypothetical protein compare
IAI47_11670 +0.5 1.8 type VI secretion system protein TssA compare
IAI47_08465 +0.5 3.0 zinc ABC transporter substrate-binding protein ZnuA compare
IAI47_05930 +0.5 2.5 DUF2184 domain-containing protein compare
IAI47_14700 +0.5 2.6 protoheme IX farnesyltransferase compare
IAI47_12170 +0.5 2.9 flagellar basal body P-ring formation protein FlgA compare
IAI47_13765 +0.5 1.6 succinate dehydrogenase cytochrome b556 subunit compare
IAI47_14660 +0.5 2.8 trigger factor compare
IAI47_11830 +0.5 2.9 muramoyltetrapeptide carboxypeptidase compare
IAI47_05395 +0.4 3.2 sulfate/thiosulfate ABC transporter permease CysW compare
IAI47_20385 +0.4 1.8 aspartate aminotransferase family protein compare
IAI47_14210 +0.4 2.3 hypothetical protein compare
IAI47_07995 +0.4 3.4 flagellar motor switch protein FliM compare
IAI47_05490 +0.4 1.9 tRNA-Val compare
IAI47_14710 +0.4 2.0 YajQ family cyclic di-GMP-binding protein compare
IAI47_10050 +0.4 1.0 hypothetical protein compare
IAI47_21665 +0.4 0.5 DUF333 domain-containing protein compare
IAI47_09350 +0.4 2.5 oxidoreductase compare
IAI47_13305 +0.4 2.3 helix-turn-helix transcriptional regulator compare
IAI47_14630 +0.4 2.0 helix-hairpin-helix domain-containing protein compare
IAI47_16600 +0.4 1.0 tRNA-OTHER compare
IAI47_15090 +0.4 1.6 hypothetical protein compare
IAI47_21360 +0.4 1.8 transcriptional regulator compare
IAI47_09435 +0.4 2.6 GtrA family protein compare
IAI47_05065 +0.4 1.4 YfgM family protein compare
IAI47_20000 +0.4 1.3 PTS sugar transporter subunit IIB compare
IAI47_14020 +0.4 1.5 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH compare
IAI47_07970 +0.4 2.6 flagellar type III secretion system protein FliR compare
IAI47_14940 +0.4 0.9 YaiI/YqxD family protein compare
IAI47_20290 +0.4 1.4 XapX domain-containing protein compare
IAI47_05525 +0.4 0.8 tRNA-Ala compare
IAI47_21335 +0.4 1.3 RepB family plasmid replication initiator protein compare
IAI47_07985 +0.4 2.1 flagellar biosynthetic protein FliO compare
IAI47_16815 +0.4 2.6 GNAT family N-acetyltransferase compare
IAI47_02380 +0.4 0.5 DNA-binding transcriptional regulator Fis compare
IAI47_07350 +0.4 0.5 hypothetical protein compare
IAI47_07975 +0.4 2.0 flagellar biosynthesis protein FliQ compare
IAI47_04070 +0.4 1.7 flavodoxin compare
IAI47_10750 +0.4 2.2 aldo/keto reductase family oxidoreductase compare
IAI47_14685 +0.4 2.7 cytochrome o ubiquinol oxidase subunit I compare
IAI47_08350 +0.4 2.7 flagellar biosynthesis protein FlhA compare
IAI47_07010 +0.4 1.1 ABC transporter permease compare
IAI47_08815 +0.4 0.8 hypothetical protein compare
IAI47_04965 +0.4 2.2 3-phenylpropionate MFS transporter compare
IAI47_00835 +0.4 1.4 cell division protein ZapB compare
IAI47_21520 +0.4 1.8 YgdI/YgdR family lipoprotein compare
IAI47_17710 +0.4 3.1 glutamate/aspartate:proton symporter GltP compare
IAI47_18515 +0.4 3.0 ECA polysaccharide chain length modulation protein compare
IAI47_12515 +0.4 2.0 pyrimidine utilization protein B compare
IAI47_11520 +0.4 1.6 type VI secretion system tip protein VgrG compare
IAI47_11235 +0.4 2.4 gamma-glutamylcyclotransferase compare
IAI47_03805 +0.4 1.7 FAD assembly factor SdhE compare
IAI47_08600 +0.4 1.5 TraR/DksA C4-type zinc finger protein compare
IAI47_21410 +0.4 1.9 metallophosphoesterase compare
IAI47_19695 +0.4 2.3 GNAT family N-acetyltransferase compare
IAI47_17970 +0.4 1.3 hypothetical protein compare
IAI47_15880 +0.4 1.0 DNA gyrase inhibitor YacG compare
IAI47_04185 +0.4 3.1 sulfate adenylyltransferase subunit CysN compare
IAI47_01550 +0.4 2.5 cell division protein FtsX compare
IAI47_20195 +0.4 2.0 LysR family transcriptional regulator compare
IAI47_17985 +0.4 3.4 YjbH domain-containing protein compare
IAI47_03740 +0.4 1.9 cell division protein ZapA compare
IAI47_15295 +0.4 1.3 oxalurate catabolism protein HpxZ compare
IAI47_08455 +0.4 1.8 zinc ABC transporter permease subunit ZnuB compare
IAI47_05175 +0.4 2.2 phosphoribosylglycinamide formyltransferase compare
IAI47_06750 +0.4 2.8 outer membrane permeability protein SanA compare
IAI47_08020 +0.4 2.3 flagellar assembly protein FliH compare
IAI47_03400 +0.4 1.8 deoxyribose-phosphate aldolase compare
IAI47_16420 +0.4 2.9 LacI family DNA-binding transcriptional regulator compare
IAI47_08860 +0.4 1.6 YcgL domain-containing protein compare
IAI47_07435 +0.4 1.7 hypothetical protein compare
IAI47_15425 +0.4 1.8 Rho-binding antiterminator compare
IAI47_20450 +0.4 1.9 LysR family transcriptional regulator compare
IAI47_05390 +0.4 1.8 sulfate/thiosulfate ABC transporter permease CysT compare
IAI47_20625 +0.4 1.5 DUF2946 domain-containing protein compare
IAI47_04020 +0.4 2.2 YgdI/YgdR family lipoprotein compare
IAI47_13435 +0.4 2.5 ATP-dependent RNA helicase RhlE compare
IAI47_12955 +0.4 1.3 cold shock-like protein CspD compare
IAI47_05825 +0.4 1.7 hypothetical protein compare
IAI47_02520 +0.4 2.7 malate dehydrogenase compare
IAI47_09830 +0.4 2.9 peptidyl-dipeptidase Dcp compare
IAI47_06310 +0.4 2.1 glutathione transferase compare
IAI47_05045 +0.4 2.1 type IV pilus biogenesis/stability protein PilW compare
IAI47_08340 +0.4 1.5 protein phosphatase CheZ compare
IAI47_09135 +0.4 2.2 acyl-CoA thioester hydrolase YciA compare
IAI47_12985 +0.4 0.8 heavy metal-binding domain-containing protein compare
IAI47_00725 +0.4 1.4 rhodanese-like domain-containing protein compare
IAI47_04180 +0.4 2.6 sulfate adenylyltransferase subunit CysD compare
IAI47_19740 +0.4 1.8 anti-sigma factor compare
IAI47_00945 +0.4 1.5 YijD family membrane protein compare
IAI47_21700 +0.3 1.5 family 1 glycosylhydrolase compare
IAI47_09310 +0.3 1.6 YbdD/YjiX family protein compare
IAI47_10470 +0.3 0.5 electron transport complex subunit E compare
IAI47_15345 +0.3 2.9 murein transglycosylase D compare
IAI47_06450 +0.3 1.2 ribonucleotide-diphosphate reductase subunit beta compare
IAI47_17250 +0.3 2.6 cell division protein ZapE compare
IAI47_20670 +0.3 2.3 phytoene/squalene synthase family protein compare
IAI47_04945 +0.3 2.2 two-component system response regulator GlrR compare
IAI47_06170 +0.3 1.0 YfcL family protein compare


Specific Phenotypes

None in this experiment

For Pantoea sp. MT58 in stress experiments

For stress Aluminum potassium sulfate dodecahydrate across organisms