Experiment set2IT090 for Sphingomonas koreensis DSMZ 15582

Compare to:

LB with Chloramphenicol 0.001 mg/ml

200 most detrimental genes:

  gene name fitness t score description  
Ga0059261_0898 +0.7 2.5 Membrane protein implicated in regulation of membrane protease activity compare
Ga0059261_4013 +0.6 2.0 hypothetical protein compare
Ga0059261_1831 +0.6 2.3 hypothetical protein compare
Ga0059261_3904 +0.6 2.8 Predicted membrane protein compare
Ga0059261_0304 +0.6 1.4 Bacterioferritin-associated ferredoxin compare
Ga0059261_0685 +0.6 1.4 pyruvate kinase compare
Ga0059261_0344 +0.5 1.6 Molecular chaperone (small heat shock protein) compare
Ga0059261_3125 +0.5 1.5 Imidazoleglycerol-phosphate synthase compare
Ga0059261_0208 +0.5 2.4 Response regulator receiver domain compare
Ga0059261_0305 +0.5 1.8 bacterioferritin compare
Ga0059261_3755 +0.5 1.4 Protein of unknown function (DUF2798) compare
Ga0059261_0657 +0.5 1.1 Uncharacterized protein conserved in bacteria compare
Ga0059261_1292 +0.5 1.4 hypothetical protein compare
Ga0059261_3581 +0.5 2.9 Alpha/beta hydrolase family compare
Ga0059261_0252 +0.5 1.8 SpoIIAA-like compare
Ga0059261_2913 +0.5 1.5 Type IV secretory pathway, VirB2 components (pilins) compare
Ga0059261_1774 +0.5 0.9 hypothetical protein compare
Ga0059261_3006 +0.4 2.1 hypothetical protein compare
Ga0059261_2713 +0.4 0.8 hypothetical protein compare
Ga0059261_3620 +0.4 1.5 molybdenum cofactor biosynthesis protein A, bacterial compare
Ga0059261_0266 +0.4 1.3 hypothetical protein compare
Ga0059261_0321 +0.4 1.0 hypothetical protein compare
Ga0059261_1190 +0.4 2.0 hypothetical protein compare
Ga0059261_3579 +0.4 2.2 hypothetical protein compare
Ga0059261_0633 +0.4 1.4 Acetyltransferases, including N-acetylases of ribosomal proteins compare
Ga0059261_0412 +0.4 1.6 DNA-binding HTH domain-containing proteins compare
Ga0059261_1316 +0.4 0.9 hypothetical protein compare
Ga0059261_3859 +0.4 1.1 MgtC family compare
Ga0059261_2109 +0.4 1.6 hypothetical protein compare
Ga0059261_3371 +0.4 1.2 hypothetical protein compare
Ga0059261_1610 +0.4 2.5 CBS domain/Transporter associated domain compare
Ga0059261_0811 +0.4 1.1 Archaeal fructose-1,6-bisphosphatase and related enzymes of inositol monophosphatase family compare
Ga0059261_0354 +0.4 1.7 6-phosphogluconate dehydratase (EC 4.2.1.12) compare
Ga0059261_3909 +0.4 1.1 Predicted membrane protein compare
Ga0059261_1596 +0.4 1.3 CBS domain compare
Ga0059261_2951 +0.4 1.1 Heavy-metal resistance compare
Ga0059261_0411 +0.4 1.2 Uncharacterized conserved protein compare
Ga0059261_0062 +0.4 1.3 hypothetical protein compare
Ga0059261_3171 +0.4 2.2 Domain of unknown function (DUF4126) compare
Ga0059261_3308 +0.4 1.0 Uncharacterized conserved protein compare
Ga0059261_0684 +0.4 1.4 Uncharacterized protein conserved in bacteria compare
Ga0059261_0059 +0.3 1.1 Stress-induced morphogen (activity unknown) compare
Ga0059261_1217 +0.3 1.4 MobA/MobL family compare
Ga0059261_3356 +0.3 0.7 hypothetical protein compare
Ga0059261_3280 +0.3 0.5 Uncharacterized conserved protein compare
Ga0059261_3815 +0.3 1.6 hypothetical protein compare
Ga0059261_2478 +0.3 1.4 Uncharacterized conserved protein compare
Ga0059261_1381 +0.3 1.4 Membrane protease subunits, stomatin/prohibitin homologs compare
Ga0059261_0111 +0.3 2.3 hypothetical protein compare
Ga0059261_1214 +0.3 0.9 hypothetical protein compare
Ga0059261_0450 +0.3 1.7 Putative copper export protein compare
Ga0059261_2763 +0.3 1.9 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) compare
Ga0059261_3046 +0.3 2.3 Transglutaminase-like superfamily compare
Ga0059261_0572 +0.3 2.2 Transcriptional regulator compare
Ga0059261_2768 +0.3 1.3 hypothetical protein compare
Ga0059261_2938 +0.3 2.0 YnbE-like lipoprotein compare
Ga0059261_2992 +0.3 1.4 Biopolymer transport protein compare
Ga0059261_0875 +0.3 0.7 Leucyl aminopeptidase compare
Ga0059261_1737 +0.3 1.7 hypothetical protein compare
Ga0059261_1724 +0.3 1.2 hypothetical protein compare
Ga0059261_0935 +0.3 1.6 Uncharacterized conserved protein compare
Ga0059261_3132 +0.3 1.7 hypothetical protein compare
Ga0059261_0673 +0.3 1.5 hypothetical protein compare
Ga0059261_2558 +0.3 1.9 DoxX-like family compare
Ga0059261_2589 +0.3 1.5 Protein of unknown function (DUF2493) compare
Ga0059261_3287 +0.3 2.2 Topoisomerase IB compare
Ga0059261_0586 +0.3 1.2 hypothetical protein compare
Ga0059261_4001 +0.3 1.8 NTP pyrophosphohydrolases including oxidative damage repair enzymes compare
Ga0059261_0725 +0.3 0.7 Fructose-1,6-bisphosphate aldolase compare
Ga0059261_0263 +0.3 1.8 3-oxoacid CoA-transferase, B subunit compare
Ga0059261_0946 +0.3 1.3 Uncharacterized protein conserved in bacteria compare
Ga0059261_4189 +0.3 1.5 hypothetical protein compare
Ga0059261_2294 +0.3 0.8 Cell division protein compare
Ga0059261_0153 +0.3 0.9 Serine acetyltransferase compare
Ga0059261_1743 +0.3 1.1 hypothetical protein compare
Ga0059261_1092 +0.3 1.0 flagellar motor switch protein FliN compare
Ga0059261_1835 +0.3 1.8 Dihydrofolate reductase compare
Ga0059261_0887 +0.3 1.3 Predicted transcriptional regulators compare
Ga0059261_0223 +0.3 1.0 Peptidase inhibitor I78 family compare
Ga0059261_0267 +0.3 0.8 Predicted membrane protein compare
Ga0059261_4171 +0.3 1.4 redox-sensitive transcriptional activator SoxR compare
Ga0059261_2914 +0.3 1.1 Type IV secretory pathway, TrbD component compare
Ga0059261_0473 +0.3 1.4 Predicted Fe-S protein compare
Ga0059261_3450 +0.3 2.2 Predicted membrane protein compare
Ga0059261_0272 +0.3 0.9 Uncharacterized small protein compare
Ga0059261_1196 +0.3 0.9 hypothetical protein compare
Ga0059261_3215 +0.3 1.8 hypothetical protein compare
Ga0059261_2053 +0.3 2.0 Mg2+ and Co2+ transporters compare
Ga0059261_3395 +0.3 1.5 hypothetical protein compare
Ga0059261_1577 +0.3 2.4 L-glutamine and L-histidine transporter (from data) compare
Ga0059261_0975 +0.3 1.7 Flp pilus assembly protein, ATPase CpaF compare
Ga0059261_2255 +0.3 1.3 nitrogen regulatory protein P-II family compare
Ga0059261_3834 +0.3 1.6 Molecular chaperone (small heat shock protein) compare
Ga0059261_0268 +0.3 1.3 Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily compare
Ga0059261_0957 +0.3 0.9 Protein of unknown function (DUF2798) compare
Ga0059261_3562 +0.3 1.3 Glycosyltransferase compare
Ga0059261_0413 +0.3 2.0 N-acyl-L-homoserine lactone synthetase compare
Ga0059261_3886 +0.3 1.7 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Ga0059261_1006 +0.3 1.6 NAD-dependent aldehyde dehydrogenases compare
Ga0059261_0599 +0.3 1.8 glucose-1-phosphate cytidylyltransferase compare
Ga0059261_0121 +0.3 0.5 Sporulation related domain compare
Ga0059261_1318 +0.3 1.0 Uncharacterized MobA-related protein compare
Ga0059261_1122 +0.3 1.0 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) compare
Ga0059261_3670 +0.3 1.2 tRNA compare
Ga0059261_2099 +0.3 1.6 flagellar hook-associated protein 3 compare
Ga0059261_2120 +0.3 1.0 hypothetical protein compare
Ga0059261_3492 +0.3 1.3 RNA polymerase sigma factor, sigma-70 family compare
Ga0059261_0257 +0.3 1.5 hypothetical protein compare
Ga0059261_1569 +0.3 1.0 Response regulator receiver domain compare
Ga0059261_3759 +0.3 0.9 hypothetical protein compare
Ga0059261_3569 +0.3 0.9 chaperone protein DnaJ compare
Ga0059261_0880 +0.2 1.7 Tetratricopeptide repeat compare
Ga0059261_1174 +0.2 1.0 Putative transposase of IS4/5 family (DUF4096) compare
Ga0059261_0102 +0.2 1.9 endopeptidase La compare
Ga0059261_1050 +0.2 0.6 hypothetical protein compare
Ga0059261_4185 +0.2 0.5 hypothetical protein compare
Ga0059261_1570 +0.2 1.6 N-formylglutamate amidohydrolase compare
Ga0059261_3825 +0.2 1.4 thiol reductant ABC exporter, CydD subunit compare
Ga0059261_4234 +0.2 1.7 Multidrug resistance efflux pump compare
Ga0059261_0894 +0.2 1.3 hypothetical protein compare
Ga0059261_1043 +0.2 0.9 Uncharacterized protein conserved in bacteria compare
Ga0059261_3783 +0.2 1.1 hypothetical protein compare
Ga0059261_1624 +0.2 1.8 2-keto-3-deoxy-galactonokinase compare
Ga0059261_3556 +0.2 0.8 transcriptional regulator, TetR family compare
Ga0059261_1278 +0.2 1.4 hypothetical protein compare
Ga0059261_3400 +0.2 2.0 diguanylate cyclase (GGDEF) domain compare
Ga0059261_3233 +0.2 1.3 Uncharacterized protein conserved in bacteria compare
Ga0059261_0447 +0.2 1.4 SnoaL-like domain compare
Ga0059261_1940 +0.2 1.7 Aspartyl protease compare
Ga0059261_2956 +0.2 1.6 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Ga0059261_1110 +0.2 1.2 flagellar biosynthetic protein FliP compare
Ga0059261_2892 +0.2 1.0 hypothetical protein compare
Ga0059261_0433 +0.2 1.0 Uncharacterized protein conserved in bacteria compare
Ga0059261_3381 +0.2 1.3 Arabinose efflux permease compare
Ga0059261_1171 +0.2 1.4 Uncharacterized conserved protein compare
Ga0059261_1741 +0.2 1.4 Conjugal transfer protein TraD compare
Ga0059261_2640 +0.2 0.9 Asp/Glu/Hydantoin racemase compare
Ga0059261_1595 +0.2 2.1 Membrane protein involved in the export of O-antigen and teichoic acid compare
Ga0059261_4029 +0.2 1.3 hypothetical protein compare
Ga0059261_1573 +0.2 1.2 hypothetical protein compare
Ga0059261_0455 +0.2 1.5 transcriptional regulator, AraC family compare
Ga0059261_0139 +0.2 1.4 Signal transduction histidine kinase, nitrogen specific compare
Ga0059261_2436 +0.2 1.3 hypothetical protein compare
Ga0059261_0269 +0.2 1.4 Dioxygenases related to 2-nitropropane dioxygenase compare
Ga0059261_4107 +0.2 1.2 hypothetical protein compare
Ga0059261_3703 +0.2 1.3 Uncharacterized conserved protein compare
Ga0059261_1548 +0.2 1.5 Uncharacterized protein involved in tolerance to divalent cations compare
Ga0059261_1100 +0.2 1.6 FlgN protein compare
Ga0059261_3801 +0.2 1.1 Phosphate/sulphate permeases compare
Ga0059261_2794 +0.2 1.7 Glutathione peroxidase compare
Ga0059261_2063 +0.2 1.0 Flagellar biosynthesis protein, FliO compare
Ga0059261_2019 +0.2 0.9 Uncharacterized protein conserved in bacteria compare
Ga0059261_3361 +0.2 2.0 hypothetical protein compare
Ga0059261_0270 +0.2 1.2 Uncharacterized protein conserved in bacteria compare
Ga0059261_3932 +0.2 1.9 Uncharacterized membrane protein compare
Ga0059261_0594 +0.2 1.2 RND family efflux transporter, MFP subunit compare
Ga0059261_4051 +0.2 1.0 Transcriptional regulator compare
Ga0059261_0686 +0.2 1.6 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED/haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E compare
Ga0059261_3238 +0.2 0.8 hypothetical protein compare
Ga0059261_1799 +0.2 0.5 Uncharacterized protein conserved in bacteria (DUF2059) compare
Ga0059261_0787 +0.2 1.3 Mg chelatase-related protein compare
Ga0059261_3282 +0.2 1.7 Transcriptional regulators compare
Ga0059261_3020 +0.2 1.3 Copper binding periplasmic protein CusF compare
Ga0059261_3050 +0.2 1.7 N-acyl-L-homoserine lactone synthetase compare
Ga0059261_2739 +0.2 1.4 heat-inducible transcription repressor HrcA compare
Ga0059261_0262 +0.2 1.6 Transcriptional regulator compare
Ga0059261_3727 +0.2 1.3 hypothetical protein compare
Ga0059261_2056 +0.2 1.7 Predicted acyl-CoA transferases/carnitine dehydratase compare
Ga0059261_3635 +0.2 0.9 Predicted integral membrane protein compare
Ga0059261_2862 +0.2 1.7 Protein of unknown function (DUF2889) compare
Ga0059261_1041 +0.2 1.3 transcriptional regulator, LysR family compare
Ga0059261_3355 +0.2 1.6 Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) compare
Ga0059261_3700 +0.2 0.9 Transcriptional regulator compare
Ga0059261_1886 +0.2 1.4 phenazine biosynthesis protein PhzF family compare
Ga0059261_1147 +0.2 1.6 Bacterial flagellin N-terminal helical region/Bacterial flagellin C-terminal helical region compare
Ga0059261_0416 +0.2 1.2 Transglutaminase-like superfamily compare
Ga0059261_0340 +0.2 1.0 Bacterial protein of unknown function (DUF937) compare
Ga0059261_1259 +0.2 1.0 Ribbon-helix-helix domain compare
Ga0059261_0064 +0.2 1.4 Domain of unknown function (DUF4112) compare
Ga0059261_2090 +0.2 0.8 flagellar basal-body rod protein FlgC compare
Ga0059261_0648 +0.2 1.1 SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase compare
Ga0059261_3658 +0.2 1.7 hypothetical protein compare
Ga0059261_3237 +0.2 1.0 hypothetical protein compare
Ga0059261_1261 +0.2 0.8 hypothetical protein compare
Ga0059261_2237 +0.2 1.4 Protein of unknown function (DUF1674) compare
Ga0059261_0844 +0.2 1.6 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
Ga0059261_4226 +0.2 1.7 NADPH:quinone reductase and related Zn-dependent oxidoreductases compare
Ga0059261_1757 +0.2 1.1 Protein of unknown function (DUF4007) compare
Ga0059261_1057 +0.2 1.0 hypothetical protein compare
Ga0059261_3240 +0.2 1.3 Flp pilus assembly protein TadB compare
Ga0059261_2935 +0.2 1.2 hypothetical protein compare
Ga0059261_1404 +0.2 1.3 transcriptional regulator, BadM/Rrf2 family compare
Ga0059261_3539 +0.2 1.6 Reverse transcriptase (RNA-dependent DNA polymerase) compare
Ga0059261_2840 +0.2 0.9 Enoyl-CoA hydratase/carnithine racemase compare
Ga0059261_0439 +0.2 0.7 hypothetical protein compare
Ga0059261_2879 +0.2 1.6 Glycerol dehydrogenase and related enzymes compare
Ga0059261_3073 +0.2 1.1 Type IV secretory pathway, VirB2 components (pilins) compare
Ga0059261_1538 +0.2 0.9 Predicted transcriptional regulators compare
Ga0059261_2717 +0.2 1.2 Biopolymer transport protein compare
Ga0059261_0073 +0.2 0.8 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Sphingomonas koreensis DSMZ 15582 in stress experiments

For stress Chloramphenicol across organisms