Experiment set2IT090 for Cupriavidus basilensis FW507-4G11

Compare to:

L-Isoleucine nitrogen source

200 most important genes:

  gene name fitness t score description  
RR42_RS14390 -6.2 -4.3 3-isopropylmalate dehydratase compare
RR42_RS14365 -6.0 -4.1 N-(5'-phosphoribosyl)anthranilate isomerase compare
RR42_RS16255 -5.5 -8.4 sulfate adenylyltransferase compare
RR42_RS06485 -5.4 -8.3 chorismate synthase compare
RR42_RS14320 -5.4 -5.3 O-succinylhomoserine sulfhydrylase compare
RR42_RS16250 -5.4 -7.4 sulfate adenylyltransferase compare
RR42_RS19005 -5.3 -6.3 3-dehydroquinate synthase compare
RR42_RS18300 -5.3 -6.2 anthranilate synthase subunit II compare
RR42_RS18305 -5.2 -4.9 anthranilate phosphoribosyltransferase compare
RR42_RS14400 -5.1 -6.0 isopropylmalate isomerase compare
RR42_RS16265 -4.7 -4.5 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
RR42_RS15905 -4.7 -14.1 phosphoenolpyruvate carboxylase compare
RR42_RS19090 -4.7 -3.2 cytochrome C compare
RR42_RS12040 -4.7 -12.3 MFS transporter compare
RR42_RS14385 -4.6 -7.3 3-isopropylmalate dehydrogenase compare
RR42_RS05860 -4.6 -5.9 phospho-2-dehydro-3-deoxyheptonate aldolase compare
RR42_RS05955 -4.5 -2.0 hypothetical protein compare
RR42_RS18295 -4.5 -13.7 anthranilate synthase component I compare
RR42_RS16270 -4.3 -11.6 sulfite reductase compare
RR42_RS01385 -4.2 -3.9 5,10-methylenetetrahydrofolate reductase compare
RR42_RS04475 -4.1 -8.4 3-phosphoshikimate 1-carboxyvinyltransferase compare
RR42_RS33250 -4.1 -8.3 tyrosine protein kinase compare
RR42_RS16965 -4.1 -7.2 ABC transporter compare
RR42_RS33255 -4.0 -2.9 protein-tyrosine phosphatase compare
RR42_RS01160 -4.0 -10.1 homoserine O-acetyltransferase compare
RR42_RS30655 -3.9 -7.3 LysR family transcriptional regulator compare
RR42_RS16280 -3.8 -5.1 transcriptional regulator compare
RR42_RS20205 -3.7 -3.6 chromosome partitioning protein compare
RR42_RS33260 -3.6 -8.5 multidrug MFS transporter compare
RR42_RS30660 -3.4 -8.5 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase compare
RR42_RS18855 -3.4 -4.6 preprotein translocase compare
RR42_RS12980 -3.3 -5.9 chemotaxis protein CheY compare
RR42_RS15890 -3.2 -8.8 heme biosynthesis protein HemY compare
RR42_RS01290 -3.2 -5.5 thiamine biosynthesis protein ThiC compare
RR42_RS21220 -3.2 -2.0 iron transporter FeoB compare
RR42_RS16245 -3.2 -6.1 uroporphyrin-III methyltransferase compare
RR42_RS11790 -3.1 -7.7 phosphoenolpyruvate synthase compare
RR42_RS14360 -3.0 -1.7 tryptophan synthase subunit alpha compare
RR42_RS04535 -3.0 -6.2 cysteine synthase compare
RR42_RS02085 -3.0 -7.4 RNA polymerase subunit sigma-54 compare
RR42_RS16275 -2.9 -4.8 membrane protein compare
RR42_RS04460 -2.8 -5.3 chorismate mutase compare
RR42_RS18990 -2.8 -17.7 glutamate synthase compare
RR42_RS02500 -2.8 -3.4 TetR family transcriptional regulator compare
RR42_RS16980 -2.8 -13.5 branched-chain amino acid ABC transporter substrate-binding protein compare
RR42_RS10345 -2.8 -6.7 amino acid dehydrogenase compare
RR42_RS16975 -2.7 -7.9 ABC transporter permease compare
RR42_RS16970 -2.7 -9.8 ABC transporter ATP-binding protein compare
RR42_RS17105 -2.7 -12.6 Clp protease ClpX compare
RR42_RS11795 -2.7 -3.1 PEP synthetase regulatory protein compare
RR42_RS05990 -2.7 -9.4 aromatic amino acid aminotransferase compare
RR42_RS16240 -2.7 -1.5 cobalamin biosynthesis protein CbiX compare
RR42_RS17645 -2.6 -6.7 shikimate dehydrogenase compare
RR42_RS16260 -2.6 -1.6 phosphoadenosine phosphosulfate reductase compare
RR42_RS11885 -2.5 -7.9 (protein-PII) uridylyltransferase compare
RR42_RS14055 -2.4 -3.3 elongation factor 4 compare
RR42_RS12985 -2.4 -6.8 histidine kinase compare
RR42_RS33240 -2.4 -13.0 GDP-L-fucose synthase compare
RR42_RS16960 -2.4 -6.0 ABC transporter ATP-binding protein compare
RR42_RS18985 -2.4 -6.2 glutamate synthase compare
RR42_RS10355 -2.3 -6.2 AsnC family transcriptional regulator compare
RR42_RS21295 -2.3 -3.0 L-lactate dehydrogenase, LutA subunit (from data) compare
RR42_RS33245 -2.3 -7.6 mannose-1-phosphate guanyltransferase compare
RR42_RS33235 -2.3 -7.7 GDP-mannose 4,6-dehydratase compare
RR42_RS14395 -2.3 -1.9 entericidin compare
RR42_RS19010 -2.3 -6.1 shikimate kinase compare
RR42_RS18850 -2.2 -1.9 preprotein translocase subunit TatC compare
RR42_RS07605 -2.2 -5.9 poly-beta-hydroxybutyrate polymerase compare
RR42_RS15470 -2.2 -2.9 biopolymer transporter ExbD compare
RR42_RS15895 -2.2 -6.1 uroporphyrinogen III methyltransferase compare
RR42_RS01775 -2.1 -7.7 glutamate--cysteine ligase compare
RR42_RS01845 -2.0 -1.9 glycerol-3-phosphate dehydrogenase compare
RR42_RS15410 -2.0 -6.1 membrane protein compare
RR42_RS18310 -2.0 -2.1 indole-3-glycerol-phosphate synthase compare
RR42_RS04700 -1.9 -1.9 ribonuclease G compare
RR42_RS01780 -1.9 -8.0 glutathione synthetase compare
RR42_RS07555 -1.8 -2.1 potassium transporter Kup compare
RR42_RS00955 -1.8 -6.5 hydroxymethylglutaryl-CoA lyase compare
RR42_RS19410 -1.8 -5.3 GntR family transcriptional regulator compare
RR42_RS33355 -1.7 -5.2 membrane protein compare
RR42_RS26905 -1.7 -7.7 methylcrotonoyl-CoA carboxylase compare
RR42_RS24605 -1.7 -7.2 TetR family transcriptional regulator compare
RR42_RS08180 -1.7 -1.7 hypothetical protein compare
RR42_RS00940 -1.7 -7.8 biotin synthase compare
RR42_RS12550 -1.7 -4.9 hypothetical protein compare
RR42_RS06875 -1.6 -2.1 hypothetical protein compare
RR42_RS01380 -1.6 -1.6 membrane protein compare
RR42_RS21690 -1.6 -1.2 acetyltransferase compare
RR42_RS14790 -1.6 -6.1 cobalamin biosynthesis protein CobD compare
RR42_RS17390 -1.6 -5.9 ATP-dependent DNA helicase RecG compare
RR42_RS26900 -1.6 -3.0 enoyl-CoA hydratase compare
RR42_RS04895 -1.6 -8.4 serine/threonine protein phosphatase compare
RR42_RS21300 -1.6 -4.8 GntR family transcriptional regulator compare
RR42_RS03080 -1.5 -3.3 recombinase RecA compare
RR42_RS12925 -1.5 -2.8 ATPase compare
RR42_RS21280 -1.5 -7.5 L-lactate permease compare
RR42_RS06095 -1.5 -2.6 hypothetical protein compare
RR42_RS02150 -1.5 -2.3 membrane protein compare
RR42_RS31285 -1.4 -2.1 XRE family transcriptional regulator compare
RR42_RS14965 -1.4 -2.4 hypothetical protein compare
RR42_RS02045 -1.4 -7.9 GTPase compare
RR42_RS36890 -1.4 -4.5 hypothetical protein compare
RR42_RS18825 -1.4 -4.1 ubiquinol-cytochrome C reductase compare
RR42_RS02705 -1.3 -2.3 Holliday junction DNA helicase RuvA compare
RR42_RS18425 -1.3 -1.3 hypothetical protein compare
RR42_RS34650 -1.3 -4.8 LacI family transcriptional regulator compare
RR42_RS26200 -1.3 -2.1 hypothetical protein compare
RR42_RS13265 -1.3 -4.8 GntR family transcriptional regulator compare
RR42_RS01920 -1.3 -3.1 protoheme IX farnesyltransferase compare
RR42_RS11275 -1.3 -4.8 3-methylitaconate isomerase compare
RR42_RS26895 -1.3 -6.2 3-methylcrotonyl-CoA carboxylase compare
RR42_RS05500 -1.3 -1.4 preprotein translocase subunit SecG compare
RR42_RS21285 -1.3 -5.0 L-lactate dehydrogenase, LutB subunit (from data) compare
RR42_RS17060 -1.3 -9.5 histidine kinase compare
RR42_RS08575 -1.3 -1.2 tail protein compare
RR42_RS08945 -1.2 -1.5 hypothetical protein compare
RR42_RS10350 -1.2 -5.2 indolepyruvate ferredoxin oxidoreductase compare
RR42_RS09580 -1.2 -1.2 hypothetical protein compare
RR42_RS17720 -1.2 -2.4 sugar kinase compare
RR42_RS25890 -1.2 -5.5 Branched-chain amino acid aminotransferase (EC 2.6.1.42) (from data) conserved
RR42_RS18815 -1.2 -5.0 cytochrome C compare
RR42_RS17055 -1.2 -5.7 LuxR family transcriptional regulator compare
RR42_RS21435 -1.1 -2.5 hypothetical protein compare
RR42_RS01885 -1.1 -4.5 cytochrome C oxidase assembly protein compare
RR42_RS15450 -1.1 -1.8 Tol system periplasmic component YbgF compare
RR42_RS04325 -1.1 -3.0 membrane protein compare
RR42_RS12015 -1.1 -1.9 dihydrolipoamide acyltransferase compare
RR42_RS15465 -1.1 -2.1 TonB-dependent receptor compare
RR42_RS18820 -1.1 -3.2 cytochrome B compare
RR42_RS01915 -1.0 -3.7 cytochrome C oxidase subunit I compare
RR42_RS21290 -1.0 -3.2 L-lactate dehydrogenase, LutC subunit (from data) compare
RR42_RS07115 -1.0 -1.1 hypothetical protein compare
RR42_RS23730 -1.0 -2.5 phenylacetate-CoA oxygenase subunit PaaB compare
RR42_RS10415 -1.0 -1.2 hypothetical protein compare
RR42_RS25785 -1.0 -2.5 TetR family transcriptional regulator compare
RR42_RS32460 -1.0 -2.5 LysR family transcriptional regulator compare
RR42_RS35895 -1.0 -3.0 PadR family transcriptional regulator compare
RR42_RS04255 -1.0 -1.8 chemotaxis protein CheW compare
RR42_RS11785 -1.0 -1.3 NfeD-like family protein 1 compare
RR42_RS00885 -1.0 -4.6 acetyl-CoA acetyltransferase compare
RR42_RS19900 -1.0 -1.8 MerR family transcriptional regulator compare
RR42_RS34690 -0.9 -2.3 permease compare
RR42_RS33210 -0.9 -2.7 teichoic acid biosynthesis protein compare
RR42_RS36660 -0.9 -2.1 GntR family transcriptional regulator compare
RR42_RS05465 -0.9 -5.7 2-isopropylmalate synthase compare
RR42_RS23070 -0.9 -3.4 4-hydroxythreonine-4-phosphate dehydrogenase compare
RR42_RS16220 -0.9 -1.1 DNA polymerase III subunit chi compare
RR42_RS00790 -0.9 -6.5 chemotaxis protein CheY compare
RR42_RS11270 -0.9 -4.6 aconitate hydratase compare
RR42_RS33650 -0.9 -1.7 IclR family transcriptional regulator compare
RR42_RS17110 -0.9 -4.0 ATP-dependent Clp protease adapter protein ClpS compare
RR42_RS29335 -0.9 -1.8 integrase compare
RR42_RS01720 -0.9 -2.1 membrane protein compare
RR42_RS02250 -0.9 -2.7 GntR family transcriptional regulator compare
RR42_RS12050 -0.9 -4.7 DNA polymerase compare
RR42_RS12990 -0.9 -2.0 hypothetical protein compare
RR42_RS08025 -0.9 -1.2 phage Gp37Gp68 compare
RR42_RS21720 -0.9 -1.2 acetoin catabolism protein X compare
RR42_RS19825 -0.9 -1.4 LysR family transcriptional regulator compare
RR42_RS11260 -0.9 -2.6 Methylisocitrate lyase (EC 4.1.3.30) (from data) compare
RR42_RS30640 -0.9 -4.4 DNA mismatch repair protein MutT compare
RR42_RS11255 -0.8 -4.4 Fis family transcriptional regulator compare
RR42_RS35720 -0.8 -2.1 flagellar basal body rod protein FlgC compare
RR42_RS04470 -0.8 -2.1 prephenate dehydrogenase compare
RR42_RS01505 -0.8 -1.4 tRNA-Cys compare
RR42_RS29095 -0.8 -2.4 XRE family transcriptional regulator compare
RR42_RS00900 -0.8 -2.3 2-hydroxychromene-2-carboxylate isomerase compare
RR42_RS22575 -0.8 -2.0 hypothetical protein compare
RR42_RS01655 -0.8 -2.6 AMP-dependent synthetase compare
RR42_RS18140 -0.8 -1.3 MarR family transcriptional regulator compare
RR42_RS32585 -0.8 -1.1 cytochrome C oxidase compare
RR42_RS05665 -0.8 -1.0 urease accessory protein UreJ compare
RR42_RS27110 -0.8 -2.6 hypothetical protein compare
RR42_RS26935 -0.8 -2.6 farnesyl-diphosphate farnesyltransferase compare
RR42_RS29785 -0.8 -2.5 hypothetical protein compare
RR42_RS37375 -0.8 -2.2 short-chain dehydrogenase compare
RR42_RS05920 -0.8 -2.3 HrcA family transcriptional regulator compare
RR42_RS22250 -0.8 -1.3 hypothetical protein compare
RR42_RS09835 -0.8 -1.9 chemotaxis protein compare
RR42_RS01875 -0.8 -2.6 cytochrome C oxidase subunit II compare
RR42_RS36450 -0.8 -1.0 acyl dehydratase compare
RR42_RS02320 -0.8 -2.6 trehalose phosphatase compare
RR42_RS00930 -0.8 -4.1 8-amino-7-oxononanoate synthase compare
RR42_RS18270 -0.8 -2.2 murein transglycosylase compare
RR42_RS11705 -0.8 -2.4 universal stress protein UspA compare
RR42_RS18485 -0.8 -0.9 glutaredoxin compare
RR42_RS07360 -0.8 -1.3 ATPase compare
RR42_RS34520 -0.8 -0.7 transposase compare
RR42_RS31490 -0.8 -1.6 hypothetical protein compare
RR42_RS09790 -0.8 -1.5 ABC transporter compare
RR42_RS20440 -0.8 -1.0 histidine kinase compare
RR42_RS13910 -0.7 -3.9 glutamate racemase compare
RR42_RS09180 -0.7 -0.8 Rrf2 family transcriptional regulator compare
RR42_RS13145 -0.7 -1.2 DNA-binding protein compare
RR42_RS20095 -0.7 -1.9 peroxiredoxin compare
RR42_RS12790 -0.7 -2.1 ACP phosphodiesterase compare
RR42_RS26265 -0.7 -0.9 hypothetical protein compare
RR42_RS32785 -0.7 -2.3 chemotaxis protein compare
RR42_RS23760 -0.7 -2.3 tRNA-Asn compare
RR42_RS05165 -0.7 -1.1 GntR family transcriptional regulator compare


Specific Phenotypes

For 4 genes in this experiment

For nitrogen source L-Isoleucine in Cupriavidus basilensis FW507-4G11

For nitrogen source L-Isoleucine across organisms