Experiment set2IT090 for Burkholderia phytofirmans PsJN

Compare to:

outer cut, LB soft agar motility assay

200 most important genes:

  gene name fitness t score description  
BPHYT_RS14865 -7.7 -3.4 UDP-glucose 6-dehydrogenase compare
BPHYT_RS18875 -7.2 -5.6 flagellar basal body rod protein FlgF compare
BPHYT_RS06190 -6.6 -3.3 heptosyltransferase compare
BPHYT_RS18890 -6.2 -6.4 flagellar basal body rod protein FlgC compare
BPHYT_RS18895 -6.1 -3.6 flagellar basal body rod protein FlgB compare
BPHYT_RS19085 -5.7 -7.9 flagellin compare
BPHYT_RS18785 -5.7 -1.5 flagellar assembly protein FliH compare
BPHYT_RS15075 -5.7 -2.5 dihydrokaempferol 4-reductase compare
BPHYT_RS18855 -5.6 -6.2 flagellar rod assembly protein FlgJ compare
BPHYT_RS18795 -5.5 -5.2 flagellar export protein FliJ compare
BPHYT_RS06175 -5.4 -4.3 LPS biosynthesis compare
BPHYT_RS16710 -5.4 -1.4 LysR family transcriptional regulator compare
BPHYT_RS18945 -5.4 -6.7 flagellar biosynthesis protein FlhB compare
BPHYT_RS14855 -5.3 -2.3 ADP-L-glycero-D-manno-heptose-6-epimerase compare
BPHYT_RS18830 -5.2 -10.5 flagellar biosynthesis protein FliQ compare
BPHYT_RS19010 -5.2 -8.1 flagellar motor protein MotB conserved
BPHYT_RS18885 -5.1 -3.5 flagellar basal body rod modification protein FlgD compare
BPHYT_RS18825 -5.1 -3.4 flagellar biosynthesis protein FliP compare
BPHYT_RS18845 -5.0 -13.2 flagellar hook-associated protein FlgK conserved
BPHYT_RS18840 -5.0 -12.6 flagellar hook-associated protein FlgL compare
BPHYT_RS19125 -5.0 -3.2 short-chain dehydrogenase compare
BPHYT_RS08850 -4.9 -2.5 transcriptional regulator compare
BPHYT_RS18970 -4.8 -13.9 chemotaxis protein compare
BPHYT_RS18790 -4.7 -8.5 ATP synthase compare
BPHYT_RS19130 -4.6 -4.6 acetyltransferase compare
BPHYT_RS18910 -4.6 -2.0 FlgN compare
BPHYT_RS02865 -4.5 -3.1 hypothetical protein compare
BPHYT_RS18865 -4.5 -4.9 flagellar L-ring protein FlgH compare
BPHYT_RS01790 -4.5 -11.9 LuxR family transcriptional regulator compare
BPHYT_RS18775 -4.4 -12.6 flagellar M-ring protein FliF compare
BPHYT_RS18935 -4.4 -7.8 flagellar biosynthesis regulator FlhF compare
BPHYT_RS08960 -4.3 -1.9 threonine synthase compare
BPHYT_RS19015 -4.3 -9.8 flagellar motor protein MotA conserved
BPHYT_RS18870 -4.3 -6.9 flagellar basal body rod protein FlgG compare
BPHYT_RS15710 -4.2 -2.5 ATP-dependent Clp protease ATP-binding protein compare
BPHYT_RS03725 -4.2 -1.8 serine hydroxymethyltransferase compare
BPHYT_RS18940 -4.1 -10.7 flagellar biosynthesis protein FlhA compare
BPHYT_RS33515 -4.1 -9.5 porin compare
BPHYT_RS16215 -4.1 -5.4 sensor histidine kinase compare
BPHYT_RS18900 -4.1 -14.2 flagella basal body P-ring formation protein FlgA compare
BPHYT_RS01485 -4.1 -1.0 histidine kinase compare
BPHYT_RS14395 -4.0 -9.8 sugar dehydratase compare
BPHYT_RS16175 -3.9 -3.1 hemolysin D compare
BPHYT_RS02965 -3.9 -2.9 membrane protein compare
BPHYT_RS18800 -3.9 -6.6 flagellar hook-length control protein compare
BPHYT_RS01625 -3.9 -3.9 chemotaxis protein CheY compare
BPHYT_RS18860 -3.8 -4.8 flagellar P-ring protein FlgI compare
BPHYT_RS19115 -3.8 -2.3 acyl carrier protein compare
BPHYT_RS18925 -3.8 -6.2 RNA polymerase sigma70 compare
BPHYT_RS18880 -3.7 -7.3 flagellar hook protein FlgE compare
BPHYT_RS18995 -3.7 -8.9 purine-binding chemotaxis protein compare
BPHYT_RS12465 -3.7 -3.1 inositol monophosphatase compare
BPHYT_RS03655 -3.6 -1.3 membrane protein compare
BPHYT_RS23840 -3.6 -4.3 methyltransferase compare
BPHYT_RS06685 -3.6 -2.5 NADH:ubiquinone oxidoreductase subunit M compare
BPHYT_RS01795 -3.5 -5.4 histidine kinase compare
BPHYT_RS19100 -3.5 -15.4 hypothetical protein compare
BPHYT_RS16840 -3.5 -2.4 transketolase compare
BPHYT_RS19105 -3.4 -12.0 aminotransferase compare
BPHYT_RS18810 -3.4 -4.5 flagellar motor switch protein FliM compare
BPHYT_RS16255 -3.4 -5.6 phosphoribosylaminoimidazole-succinocarboxamide synthase compare
BPHYT_RS19120 -3.3 -4.8 3-oxoacyl-ACP synthase compare
BPHYT_RS14400 -3.2 -2.4 anti-sigma factor compare
BPHYT_RS03400 -3.2 -1.1 ATP-dependent DNA helicase RecG compare
BPHYT_RS19000 -3.2 -10.2 chemotaxis protein CheA compare
BPHYT_RS06530 -3.2 -1.6 membrane protein compare
BPHYT_RS04285 -3.2 -2.3 rhamnosyltransferase compare
BPHYT_RS04370 -3.2 -1.8 glycosyl transferase compare
BPHYT_RS11705 -3.1 -1.1 hypothetical protein compare
BPHYT_RS09500 -3.1 -6.2 glucose-6-phosphate isomerase compare
BPHYT_RS35835 -3.1 -4.0 hypothetical protein compare
BPHYT_RS09620 -3.1 -3.5 aminodeoxychorismate lyase compare
BPHYT_RS09315 -3.0 -1.1 chemotaxis protein CheY compare
BPHYT_RS04290 -3.0 -2.3 glycosyl transferase family 2 compare
BPHYT_RS02130 -2.9 -3.8 hydroxymethylglutaryl-CoA lyase compare
BPHYT_RS13245 -2.8 -5.4 hypothetical protein compare
BPHYT_RS18835 -2.8 -1.0 flagellar biosynthesis protein FliR compare
BPHYT_RS18765 -2.7 -3.6 flagellar biosynthesis protein FliS compare
BPHYT_RS33765 -2.7 -1.2 membrane protein compare
BPHYT_RS02285 -2.6 -6.8 cell division protein compare
BPHYT_RS33535 -2.6 -17.4 RNA polymerase sigma factor RpoD compare
BPHYT_RS04385 -2.6 -4.0 nucleoside-diphosphate sugar oxidoreductase compare
BPHYT_RS12060 -2.6 -2.1 hypothetical protein compare
BPHYT_RS17520 -2.6 -4.8 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase compare
BPHYT_RS04335 -2.6 -1.9 membrane protein compare
BPHYT_RS14255 -2.6 -13.2 ABC transporter compare
BPHYT_RS24590 -2.5 -1.1 DeoR faimly transcriptional regulator compare
BPHYT_RS17100 -2.5 -8.2 RNA pyrophosphohydrolase compare
BPHYT_RS18610 -2.5 -6.1 lytic transglycosylase compare
BPHYT_RS18980 -2.4 -8.2 chemotaxis protein CheR compare
BPHYT_RS08060 -2.4 -7.5 ribosome maturation factor RimP compare
BPHYT_RS16270 -2.4 -3.8 phosphoglycerate kinase compare
BPHYT_RS24565 -2.4 -3.7 membrane protein compare
BPHYT_RS02525 -2.4 -8.8 membrane protein compare
BPHYT_RS12510 -2.3 -2.7 RNA-binding protein compare
BPHYT_RS19025 -2.3 -3.6 transcriptional regulator compare
BPHYT_RS14250 -2.3 -8.6 glycosyl transferase compare
BPHYT_RS24315 -2.3 -1.4 phosphoribosyltransferase compare
BPHYT_RS02860 -2.3 -1.1 membrane protein compare
BPHYT_RS18805 -2.3 -2.4 flagellar basal body protein FliL compare
BPHYT_RS18780 -2.2 -2.4 flagellar motor switch protein FliG compare
BPHYT_RS30485 -2.2 -1.2 ABC transporter ATP-binding protein compare
BPHYT_RS33890 -2.2 -7.5 fimbrial protein FimV compare
BPHYT_RS36000 -2.2 -2.4 hypothetical protein compare
BPHYT_RS09515 -2.2 -3.5 phosphoribosylformylglycinamidine synthase compare
BPHYT_RS16210 -2.1 -3.2 peptidase compare
BPHYT_RS19610 -2.1 -1.8 general secretion pathway protein GspC compare
BPHYT_RS14060 -2.1 -1.7 peptidase M23 compare
BPHYT_RS16135 -2.0 -6.7 ABC transporter ATP-binding protein compare
BPHYT_RS16245 -2.0 -2.7 phosphoribosylaminoimidazole carboxylase compare
BPHYT_RS19305 -2.0 -6.1 ATP-dependent DNA helicase Rep compare
BPHYT_RS12925 -2.0 -1.1 exodeoxyribonuclease III compare
BPHYT_RS06375 -2.0 -7.3 ribonuclease compare
BPHYT_RS34360 -2.0 -2.9 methyl-accepting chemotaxis protein conserved
BPHYT_RS18985 -2.0 -2.2 hypothetical protein compare
BPHYT_RS01425 -2.0 -3.5 3-phosphoglycerate dehydrogenase compare
BPHYT_RS36275 -1.9 -1.1 hypothetical protein compare
BPHYT_RS21340 -1.9 -3.2 2OG-Fe(II) oxygenase compare
BPHYT_RS32260 -1.9 -1.6 hypothetical protein compare
BPHYT_RS22360 -1.9 -2.6 response regulator receiver compare
BPHYT_RS19565 -1.9 -9.6 gamma-glutamyl:cysteine ligase compare
BPHYT_RS20665 -1.9 -0.8 LysR family transcriptional regulator compare
BPHYT_RS36090 -1.9 -2.1 hypothetical protein compare
BPHYT_RS02415 -1.9 -4.3 cytochrome C550 compare
BPHYT_RS09105 -1.9 -3.6 protein-L-isoaspartate O-methyltransferase compare
BPHYT_RS17945 -1.8 -1.6 cytochrome C biogenesis protein compare
BPHYT_RS35005 -1.8 -3.4 molecular chaperone DnaJ compare
BPHYT_RS33850 -1.8 -1.4 sporulation protein compare
BPHYT_RS16340 -1.8 -6.2 succinyl-CoA synthetase subunit alpha compare
BPHYT_RS18990 -1.8 -2.4 chemotaxis protein compare
BPHYT_RS14840 -1.8 -6.4 lytic transglycosylase compare
BPHYT_RS01630 -1.8 -2.1 ATP-dependent protease ATPase subunit HslU compare
BPHYT_RS02135 -1.8 -2.4 glyoxylate reductase compare
BPHYT_RS11970 -1.8 -1.1 cupin compare
BPHYT_RS10065 -1.8 -1.5 cytochrome C oxidase subunit I compare
BPHYT_RS09480 -1.8 -1.2 peptidyl-prolyl cis-trans isomerase compare
BPHYT_RS17240 -1.8 -1.0 cell division protein FtsW compare
BPHYT_RS19110 -1.7 -4.9 3-oxoacyl-ACP synthase compare
BPHYT_RS20235 -1.7 -3.4 iron ABC transporter compare
BPHYT_RS29520 -1.7 -0.8 hypothetical protein compare
BPHYT_RS06710 -1.7 -1.2 hypothetical protein compare
BPHYT_RS04455 -1.7 -1.2 glycosyl transferase compare
BPHYT_RS13610 -1.7 -3.1 MerR family transcriptional regulator compare
BPHYT_RS06325 -1.7 -3.3 ATPase compare
BPHYT_RS18590 -1.7 -0.8 hypothetical protein compare
BPHYT_RS27430 -1.7 -1.5 LysR family transcriptional regulator compare
BPHYT_RS30085 -1.7 -1.4 hypothetical protein compare
BPHYT_RS19570 -1.7 -10.1 sodium/hydrogen exchanger compare
BPHYT_RS02590 -1.7 -4.7 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase compare
BPHYT_RS11480 -1.6 -3.3 heme ABC transporter ATP-binding protein compare
BPHYT_RS18975 -1.6 -3.1 chemotaxis protein CheD compare
BPHYT_RS15890 -1.6 -1.0 3-hydroxy-2-methylbutyryl-CoA dehydrogenase compare
BPHYT_RS16835 -1.6 -3.7 glyceraldehyde-3-phosphate dehydrogenase compare
BPHYT_RS34490 -1.6 -1.0 hypothetical protein compare
BPHYT_RS14505 -1.6 -1.7 membrane protein compare
BPHYT_RS25935 -1.6 -1.7 type III secretion protein compare
BPHYT_RS36005 -1.6 -2.3 hypothetical protein compare
BPHYT_RS01620 -1.5 -6.3 sensor histidine kinase compare
BPHYT_RS18965 -1.5 -1.4 chemotaxis protein CheY compare
BPHYT_RS20245 -1.5 -5.7 iron ABC transporter substrate-binding protein compare
BPHYT_RS15290 -1.5 -1.1 tRNA-Arg compare
BPHYT_RS33540 -1.5 -2.4 hypothetical protein compare
BPHYT_RS15020 -1.5 -6.0 tetratricopeptide repeat protein compare
BPHYT_RS33845 -1.5 -2.2 bacteriocin production protein compare
BPHYT_RS36025 -1.5 -3.4 hypothetical protein compare
BPHYT_RS34815 -1.5 -1.5 ABC transporter compare
BPHYT_RS14245 -1.5 -1.3 membrane protein compare
BPHYT_RS31950 -1.5 -1.5 short-chain dehydrogenase compare
BPHYT_RS34805 -1.5 -3.7 ABC transporter compare
BPHYT_RS05905 -1.5 -1.1 hypothetical protein compare
BPHYT_RS34320 -1.5 -2.4 DNA-binding protein compare
BPHYT_RS17035 -1.4 -3.2 sugar kinase compare
BPHYT_RS04095 -1.4 -1.1 SAM-dependent methyltransferase PhcB compare
BPHYT_RS05650 -1.4 -1.1 hypothetical protein compare
BPHYT_RS09100 -1.4 -3.4 stationary phase survival protein SurE compare
BPHYT_RS02975 -1.4 -1.9 membrane protein compare
BPHYT_RS28910 -1.4 -1.6 diguanylate phosphodiesterase compare
BPHYT_RS28485 -1.4 -1.1 GntR family transcriptional regulator compare
BPHYT_RS34780 -1.4 -2.8 phytoene synthase compare
BPHYT_RS10240 -1.4 -0.8 translation initiation inhibitor compare
BPHYT_RS09310 -1.4 -3.4 sensor histidine kinase compare
BPHYT_RS28325 -1.4 -2.6 NADPH-dependent FMN reductase compare
BPHYT_RS07350 -1.4 -1.5 ABC transporter ATP-binding protein compare
BPHYT_RS17075 -1.4 -3.2 ABC transporter permease compare
BPHYT_RS20280 -1.4 -1.0 hypothetical protein compare
BPHYT_RS16130 -1.4 -4.6 cation ABC transporter substrate-binding protein compare
BPHYT_RS10650 -1.4 -1.0 membrane protein compare
BPHYT_RS22940 -1.4 -1.1 pilus assembly protein TadE compare
BPHYT_RS23570 -1.4 -5.4 chemotaxis protein CheY compare
BPHYT_RS04955 -1.4 -1.7 methionyl-tRNA synthetase compare
BPHYT_RS15615 -1.4 -2.0 4-hydroxy-3-methylbut-2-enyl diphosphate reductase compare
BPHYT_RS13390 -1.4 -0.9 IclR family transcriptional regulator compare
BPHYT_RS00980 -1.4 -0.9 GCN5 family acetyltransferase compare
BPHYT_RS16975 -1.3 -3.1 shikimate 5-dehydrogenase compare
BPHYT_RS01975 -1.3 -1.5 hypothetical protein compare
BPHYT_RS04885 -1.3 -1.6 threonine-phosphate decarboxylase compare
BPHYT_RS01950 -1.3 -2.1 phosphoheptose isomerase compare
BPHYT_RS04610 -1.3 -2.0 type VI secretion protein ImpA compare
BPHYT_RS08525 -1.3 -0.9 SAM-dependent methyltransferase compare
BPHYT_RS17085 -1.3 -4.8 hypoxanthine phosphoribosyltransferase compare


Specific Phenotypes

For 9 genes in this experiment

For motility Agar in Burkholderia phytofirmans PsJN

For motility Agar across organisms