Experiment set2IT090 for Burkholderia phytofirmans PsJN

Compare to:

outer cut, LB soft agar motility assay

200 most detrimental genes:

  gene name fitness t score description  
BPHYT_RS14140 +2.9 6.9 phosphate transporter permease subunit PstC compare
BPHYT_RS13645 +2.9 22.9 threonine--tRNA ligase compare
BPHYT_RS28575 +2.3 2.7 transcriptional regulator compare
BPHYT_RS15305 +2.2 8.0 guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase compare
BPHYT_RS14135 +2.1 4.4 phosphate transporter permease subunit PtsA compare
BPHYT_RS32605 +1.7 2.7 hypothetical protein compare
BPHYT_RS35495 +1.7 3.4 nucleotide pyrophosphohydrolase compare
BPHYT_RS26550 +1.6 2.6 Fis family transcriptional regulator compare
BPHYT_RS02660 +1.6 1.8 membrane protein compare
BPHYT_RS16065 +1.6 1.3 LacI family transcriptional regulator compare
BPHYT_RS06985 +1.6 4.2 fumarate hydratase compare
BPHYT_RS33820 +1.5 8.1 histidine kinase compare
BPHYT_RS19985 +1.5 1.7 CoA-transferase compare
BPHYT_RS12150 +1.5 9.3 PII uridylyl-transferase compare
BPHYT_RS36555 +1.5 7.9 hypothetical protein compare
BPHYT_RS05330 +1.5 2.9 phosphohydrolase compare
BPHYT_RS15325 +1.4 3.4 ribonuclease PH compare
BPHYT_RS14130 +1.4 4.9 phosphate ABC transporter ATP-binding protein compare
BPHYT_RS13080 +1.4 1.5 hypothetical protein compare
BPHYT_RS32475 +1.4 1.8 dihydroxyacetone kinase compare
BPHYT_RS35955 +1.4 2.5 hypothetical protein compare
BPHYT_RS07425 +1.4 1.8 hypothetical protein compare
BPHYT_RS21025 +1.4 1.6 cation-binding protein compare
BPHYT_RS24690 +1.4 6.7 ionic transporter y4hA compare
BPHYT_RS11635 +1.3 1.4 RNA polymerase subunit sigma-24 compare
BPHYT_RS17095 +1.3 4.3 proline--tRNA ligase compare
BPHYT_RS25070 +1.3 1.8 choline ABC transporter permease compare
BPHYT_RS05850 +1.3 2.2 hypothetical protein compare
BPHYT_RS18420 +1.3 1.1 hypothetical protein compare
BPHYT_RS35230 +1.3 2.0 type 11 methyltransferase compare
BPHYT_RS02010 +1.3 2.1 copper homeostasis protein CutC compare
BPHYT_RS10645 +1.3 1.6 cyanate hydratase compare
BPHYT_RS14670 +1.3 1.8 hypothetical protein compare
BPHYT_RS01115 +1.3 2.6 hypothetical protein compare
BPHYT_RS25335 +1.2 1.2 hypothetical protein compare
BPHYT_RS12985 +1.2 1.1 amino acid acetyltransferase compare
BPHYT_RS32735 +1.2 2.4 hypothetical protein compare
BPHYT_RS32155 +1.2 1.7 type IV secretion system protein VirB11 compare
BPHYT_RS04710 +1.2 1.7 hypothetical protein compare
BPHYT_RS31890 +1.2 1.9 transposase compare
BPHYT_RS06335 +1.2 1.4 CopG family transcriptional regulator compare
BPHYT_RS16490 +1.2 2.9 glycerol-3-phosphate dehydrogenase compare
BPHYT_RS25885 +1.2 2.5 type III secretion protein compare
BPHYT_RS28745 +1.2 2.0 2-keto-4-pentenoate hydratase compare
BPHYT_RS17380 +1.2 5.3 ribulose-phosphate 3-epimerase compare
BPHYT_RS03625 +1.2 5.5 Histidinol-phosphatase (EC:3.1.3.15) (from data) compare
BPHYT_RS23420 +1.2 1.6 acetoacetyl-CoA synthase compare
BPHYT_RS22295 +1.1 1.5 LysR family transcriptional regulator compare
BPHYT_RS10150 +1.1 2.0 LysR family transcriptional regulator compare
BPHYT_RS08185 +1.1 2.1 pilus assembly protein CpaF compare
BPHYT_RS32435 +1.1 1.4 formate dehydrogenase-N subunit beta compare
BPHYT_RS23350 +1.1 2.1 NAD-dependent epimerase/dehydratase compare
BPHYT_RS29850 +1.1 1.1 protein tyrosine kinase compare
BPHYT_RS17640 +1.1 2.3 2-alkenal reductase compare
BPHYT_RS10500 +1.1 1.6 acetolactate synthase compare
BPHYT_RS10475 +1.1 1.5 mammalian cell entry protein compare
BPHYT_RS28840 +1.1 2.5 oxidoreductase compare
BPHYT_RS11140 +1.1 2.3 major facilitator transporter compare
BPHYT_RS05580 +1.1 2.9 hypothetical protein compare
BPHYT_RS36060 +1.1 4.9 hypothetical protein compare
BPHYT_RS29035 +1.1 1.5 arsenic transporter compare
BPHYT_RS33150 +1.1 1.1 beta-lactamase compare
BPHYT_RS34035 +1.1 2.3 type II and III secretion system outermembrane protein, secretin compare
BPHYT_RS20505 +1.1 1.4 carboxymethylenebutenolidase compare
BPHYT_RS33785 +1.1 3.5 glycogen debranching protein compare
BPHYT_RS14740 +1.1 6.6 threonine-phosphate decarboxylase compare
BPHYT_RS36565 +1.1 4.8 hypothetical protein compare
BPHYT_RS34185 +1.1 2.4 cold-shock protein compare
BPHYT_RS07925 +1.1 2.1 glutamine amidotransferase compare
BPHYT_RS33580 +1.1 2.6 geranyltranstransferase compare
BPHYT_RS36245 +1.0 1.4 hypothetical protein compare
BPHYT_RS33525 +1.0 4.0 hypothetical protein compare
BPHYT_RS08600 +1.0 1.6 hypothetical protein compare
BPHYT_RS10350 +1.0 3.4 hypothetical protein compare
BPHYT_RS05610 +1.0 3.8 DNA-cytosine methyltransferase compare
BPHYT_RS09390 +1.0 2.5 ABC transporter permease compare
BPHYT_RS10670 +1.0 1.4 catechol 1,2-dioxygenase compare
BPHYT_RS23500 +1.0 1.8 hypothetical protein compare
BPHYT_RS18655 +1.0 2.1 3-oxoacyl-ACP synthase compare
BPHYT_RS29835 +1.0 2.1 glycosyltransferase compare
BPHYT_RS28930 +1.0 1.0 chromosome partitioning protein ParA compare
BPHYT_RS20715 +1.0 0.9 peptidase compare
BPHYT_RS23380 +1.0 4.4 hypothetical protein compare
BPHYT_RS35645 +1.0 3.8 porin compare
BPHYT_RS26890 +1.0 2.8 LysR family transcriptional regulator compare
BPHYT_RS34280 +1.0 2.3 hypothetical protein compare
BPHYT_RS32165 +1.0 2.1 type IV secretion system protein VirB9 compare
BPHYT_RS25095 +1.0 1.1 AraC family transcriptional regulator compare
BPHYT_RS31630 +1.0 1.5 hypothetical protein compare
BPHYT_RS32395 +1.0 1.1 hypothetical protein compare
BPHYT_RS20430 +1.0 1.5 3-dehydroquinate dehydratase compare
BPHYT_RS07920 +1.0 1.7 hypothetical protein compare
BPHYT_RS04155 +1.0 1.9 polysaccharide deacetylase compare
BPHYT_RS10470 +0.9 1.6 hypothetical protein compare
BPHYT_RS11125 +0.9 1.4 alkylhydroperoxidase compare
BPHYT_RS14145 +0.9 4.1 phosphate ABC transporter substrate-binding protein compare
BPHYT_RS28320 +0.9 1.8 molecular chaperone DnaJ compare
BPHYT_RS31395 +0.9 2.9 thiamine pyrophosphate-binding protein compare
BPHYT_RS35615 +0.9 2.1 hypothetical protein compare
BPHYT_RS10260 +0.9 1.4 hypothetical protein compare
BPHYT_RS07340 +0.9 2.2 glyoxalase compare
BPHYT_RS26880 +0.9 2.1 ketosteroid isomerase compare
BPHYT_RS05355 +0.9 2.0 Crp/Fnr family transcriptional regulator compare
BPHYT_RS31960 +0.9 3.3 hypothetical protein compare
BPHYT_RS26540 +0.9 1.3 hypothetical protein compare
BPHYT_RS04400 +0.9 1.0 Crp/Fnr family transcriptional regulator compare
BPHYT_RS28660 +0.9 1.3 polyvinylalcohol dehydrogenase compare
BPHYT_RS29065 +0.9 2.0 hypothetical protein compare
BPHYT_RS34040 +0.9 3.6 hypothetical protein compare
BPHYT_RS26040 +0.9 1.5 cysteine hydrolase compare
BPHYT_RS33965 +0.9 1.3 methylcitrate synthase compare
BPHYT_RS25135 +0.9 1.7 hypothetical protein compare
BPHYT_RS09980 +0.9 1.1 TetR family transcriptional regulator compare
BPHYT_RS10720 +0.9 0.8 hypothetical protein compare
BPHYT_RS36320 +0.9 3.0 type IV secretion system family protein compare
BPHYT_RS26530 +0.9 1.0 amino acid dehydrogenase compare
BPHYT_RS25450 +0.9 1.0 membrane protein compare
BPHYT_RS17590 +0.9 1.3 hypothetical protein compare
BPHYT_RS17725 +0.9 3.2 BolA family transcriptional regulator compare
BPHYT_RS25565 +0.9 2.0 hypothetical protein compare
BPHYT_RS03110 +0.9 2.0 MarR family transcriptional regulator compare
BPHYT_RS23930 +0.9 2.2 triphosphoribosyl-dephospho-CoA synthase compare
BPHYT_RS25590 +0.9 1.3 FAD-dependent pyridine nucleotide-disulfide oxidoreductase compare
BPHYT_RS21635 +0.9 2.2 extradiol dioxygenase compare
BPHYT_RS25055 +0.9 2.5 MFS transporter compare
BPHYT_RS19890 +0.9 1.0 hypothetical protein compare
BPHYT_RS19895 +0.9 1.5 rod shape-determining protein RodA compare
BPHYT_RS17265 +0.8 1.0 cell division protein compare
BPHYT_RS13460 +0.8 1.4 chemotaxis protein compare
BPHYT_RS26940 +0.8 1.7 nuclease compare
BPHYT_RS08995 +0.8 0.8 hypothetical protein compare
BPHYT_RS25350 +0.8 4.0 AMP-dependent synthetase and ligase compare
BPHYT_RS02970 +0.8 5.9 excinuclease ABC subunit A compare
BPHYT_RS27560 +0.8 0.9 histidine kinase compare
BPHYT_RS16865 +0.8 2.1 ribonuclease compare
BPHYT_RS23395 +0.8 1.2 glycosyl transferase compare
BPHYT_RS10320 +0.8 3.0 hypothetical protein compare
BPHYT_RS21955 +0.8 2.0 acetyl-CoA acetyltransferase compare
BPHYT_RS06270 +0.8 3.4 glyoxalase compare
BPHYT_RS09875 +0.8 1.6 aldehyde dehydrogenase compare
BPHYT_RS04995 +0.8 2.3 hypothetical protein compare
BPHYT_RS28190 +0.8 1.9 porin compare
BPHYT_RS22820 +0.8 1.1 hydrolase compare
BPHYT_RS22860 +0.8 0.7 chemotaxis protein CheY compare
BPHYT_RS31590 +0.8 1.6 hypothetical protein compare
BPHYT_RS23035 +0.8 1.2 hypothetical protein compare
BPHYT_RS26870 +0.8 2.9 cytochrome C551 compare
BPHYT_RS19905 +0.8 1.5 membrane protein compare
BPHYT_RS31535 +0.8 2.1 membrane protein compare
BPHYT_RS25735 +0.8 1.0 integrase compare
BPHYT_RS20000 +0.8 1.1 serine/threonine protein kinase compare
BPHYT_RS23520 +0.8 1.2 peroxidase compare
BPHYT_RS27545 +0.8 1.3 histidine kinase compare
BPHYT_RS25210 +0.8 0.7 drug:proton antiporter compare
BPHYT_RS30775 +0.8 1.2 gluconate 2-dehydrogenase compare
BPHYT_RS28995 +0.8 2.4 histidine kinase compare
BPHYT_RS21790 +0.8 1.8 hypothetical protein compare
BPHYT_RS17185 +0.8 2.6 N-acetylglutamate synthase compare
BPHYT_RS04140 +0.8 2.0 polysaccharide biosynthesis protein compare
BPHYT_RS10435 +0.8 2.0 ThiJ/PfpI domain-containing protein compare
BPHYT_RS05695 +0.8 1.8 transcriptional regulator compare
BPHYT_RS28890 +0.8 2.5 3,4-dihydroxyphenylacetate 2,3-dioxygenase compare
BPHYT_RS02520 +0.8 2.7 Fis family transcriptional regulator compare
BPHYT_RS04015 +0.8 1.3 glycosyl transferase compare
BPHYT_RS21035 +0.8 1.8 ABC transporter permease compare
BPHYT_RS06935 +0.8 3.2 hypothetical protein compare
BPHYT_RS31515 +0.8 1.2 agmatinase compare
BPHYT_RS31795 +0.8 1.8 aldo/keto reductase compare
BPHYT_RS15470 +0.8 3.6 tRNA (guanine-N(7)-)-methyltransferase compare
BPHYT_RS36590 +0.8 2.2 hypothetical protein compare
BPHYT_RS35480 +0.8 1.4 salicylyl-CoA 5-hydroxylase compare
BPHYT_RS14790 +0.8 2.5 D-amino acid dehydrogenase compare
BPHYT_RS22390 +0.8 1.9 glycine/betaine ABC transporter substrate-binding protein compare
BPHYT_RS30500 +0.8 2.4 ABC transporter permease compare
BPHYT_RS05405 +0.7 1.3 GCN5 family acetyltransferase compare
BPHYT_RS30415 +0.7 1.1 AraC family transcriptional regulator compare
BPHYT_RS36160 +0.7 3.5 hypothetical protein compare
BPHYT_RS20630 +0.7 0.8 patatin compare
BPHYT_RS35980 +0.7 2.5 hypothetical protein compare
BPHYT_RS30135 +0.7 1.3 SAM-dependent methyltransferase compare
BPHYT_RS19325 +0.7 1.3 glycine cleavage system H protein compare
BPHYT_RS24065 +0.7 2.5 glucose-methanol-choline oxidoreductase compare
BPHYT_RS35355 +0.7 2.3 amidohydrolase compare
BPHYT_RS00380 +0.7 1.6 3-octaprenyl-4-hydroxybenzoate carboxy-lyase compare
BPHYT_RS22465 +0.7 1.8 zinc carboxypeptidase-like protein compare
BPHYT_RS29820 +0.7 1.7 hypothetical protein compare
BPHYT_RS22815 +0.7 1.3 TonB-denpendent receptor compare
BPHYT_RS36435 +0.7 0.6 hypothetical protein compare
BPHYT_RS15715 +0.7 3.4 ATP-dependent Clp protease adapter protein ClpS compare
BPHYT_RS03930 +0.7 1.8 3-hydroxy-3-methylglutaryl-CoA lyase compare
BPHYT_RS32770 +0.7 2.3 histidine kinase compare
BPHYT_RS32210 +0.7 0.3 hypothetical protein compare
BPHYT_RS27270 +0.7 1.6 photosystem reaction center subunit H compare
BPHYT_RS25785 +0.7 2.4 sugar ABC transporter permease compare
BPHYT_RS10810 +0.7 2.2 glucose-methanol-choline oxidoreductase compare
BPHYT_RS35300 +0.7 1.6 flavin reductase compare
BPHYT_RS24390 +0.7 2.2 hypothetical protein compare
BPHYT_RS20170 +0.7 1.7 sugar transporter compare
BPHYT_RS24205 +0.7 1.2 aldolase compare
BPHYT_RS26255 +0.7 2.1 lipase compare


Specific Phenotypes

For 9 genes in this experiment

For motility Agar in Burkholderia phytofirmans PsJN

For motility Agar across organisms