Experiment set2IT089 for Rahnella sp. WP5

Compare to:

D-Mannitol carbon source

200 most important genes:

  gene name fitness t score description  
EX31_RS03695 -6.5 -4.5 3-isopropylmalate dehydratase small subunit compare
EX31_RS14215 -5.7 -15.1 cystathionine gamma-synthase compare
EX31_RS15005 -5.5 -14.6 dihydroxy-acid dehydratase compare
EX31_RS14180 -5.5 -11.7 argininosuccinate lyase compare
EX31_RS14200 -5.4 -14.9 phosphoenolpyruvate carboxylase compare
EX31_RS03935 -5.3 -9.5 threonine synthase compare
EX31_RS12510 -5.3 -14.8 FAD-dependent oxidoreductase compare
EX31_RS15020 -5.2 -15.7 ketol-acid reductoisomerase compare
EX31_RS14190 -5.2 -12.5 N-acetyl-gamma-glutamyl-phosphate reductase compare
EX31_RS12515 -5.2 -21.8 glutamate synthase large subunit compare
EX31_RS14185 -5.0 -8.4 acetylglutamate kinase compare
EX31_RS02690 -5.0 -4.8 pyrroline-5-carboxylate reductase compare
EX31_RS03690 -4.9 -10.0 3-isopropylmalate dehydratase large subunit compare
EX31_RS03685 -4.9 -13.8 3-isopropylmalate dehydrogenase compare
EX31_RS04035 -4.9 -11.8 phosphoserine phosphatase compare
EX31_RS03830 -4.8 -17.0 carbamoyl-phosphate synthase large subunit compare
EX31_RS03835 -4.8 -5.7 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit compare
EX31_RS22695 -4.8 -9.1 phosphoribosylformylglycinamidine cyclo-ligase compare
EX31_RS03945 -4.7 -21.9 bifunctional aspartate kinase/homoserine dehydrogenase I compare
EX31_RS23415 -4.7 -4.6 citrate synthase compare
EX31_RS12825 -4.7 -7.2 ornithine carbamoyltransferase compare
EX31_RS20980 -4.7 -7.8 glutamate 5-kinase compare
EX31_RS18530 -4.7 -12.7 leucine-responsive transcriptional regulator Lrp compare
EX31_RS13275 -4.7 -12.0 diaminopimelate decarboxylase compare
EX31_RS16860 -4.6 -19.8 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
EX31_RS13445 -4.6 -14.5 argininosuccinate synthase compare
EX31_RS16855 -4.5 -15.2 phosphoribosylamine--glycine ligase compare
EX31_RS20975 -4.5 -8.0 glutamate-5-semialdehyde dehydrogenase compare
EX31_RS20180 -4.4 -4.2 phosphocarrier protein Hpr compare
EX31_RS09970 -4.4 -7.3 bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF compare
EX31_RS03940 -4.4 -11.6 homoserine kinase compare
EX31_RS12400 -4.4 -3.0 RNA polymerase factor sigma-54 compare
EX31_RS15875 -4.4 -14.2 nitrogen regulation protein NR(II) compare
EX31_RS22750 -4.4 -3.0 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
EX31_RS11735 -4.4 -7.3 homoserine O-succinyltransferase compare
EX31_RS14500 -4.4 -13.1 orotate phosphoribosyltransferase compare
EX31_RS09965 -4.3 -5.1 anthranilate phosphoribosyltransferase compare
EX31_RS13160 -4.3 -12.9 amino-acid N-acetyltransferase compare
EX31_RS07895 -4.3 -10.6 phosphoadenylyl-sulfate reductase compare
EX31_RS21470 -4.3 -9.1 phosphoglycerate dehydrogenase compare
EX31_RS14205 -4.2 -14.4 methylenetetrahydrofolate reductase compare
EX31_RS21895 -4.2 -18.5 phosphoribosylformylglycinamidine synthase compare
EX31_RS15880 -4.2 -10.1 nitrogen regulation protein NR(I) compare
EX31_RS23245 -4.2 -16.6 asparagine synthase B compare
EX31_RS20185 -4.1 -4.0 phosphoenolpyruvate-protein phosphotransferase PtsI compare
EX31_RS05785 -4.1 -4.0 superoxide dismutase [Mn] compare
EX31_RS09960 -4.1 -5.5 glutamine amidotransferase compare
EX31_RS20175 -4.1 -10.1 cysteine synthase A compare
EX31_RS22620 -4.1 -7.2 5-(carboxyamino)imidazole ribonucleotide synthase compare
EX31_RS03250 -4.1 -11.0 RNA polymerase-binding protein DksA compare
EX31_RS19570 -4.0 -14.0 amidophosphoribosyltransferase compare
EX31_RS11440 -4.0 -7.6 histidinol dehydrogenase compare
EX31_RS09955 -4.0 -4.7 anthranilate synthase component 1 compare
EX31_RS11455 -4.0 -5.3 imidazole glycerol phosphate synthase subunit HisH compare
EX31_RS02520 -4.0 -3.8 sigma-54-dependent Fis family transcriptional regulator compare
EX31_RS09975 -3.9 -6.0 tryptophan synthase subunit beta compare
EX31_RS11450 -3.9 -7.0 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
EX31_RS09890 -3.9 -10.8 HTH-type transcriptional regulator CysB compare
EX31_RS05825 -3.9 -2.7 mannitol-1-phosphate 5-dehydrogenase compare
EX31_RS11465 -3.8 -8.8 imidazole glycerol phosphate synthase subunit HisF compare
EX31_RS07905 -3.8 -20.3 NADPH-dependent assimilatory sulfite reductase flavoprotein subunit compare
EX31_RS15010 -3.8 -15.8 threonine ammonia-lyase, biosynthetic compare
EX31_RS09980 -3.7 -6.2 tryptophan synthase subunit alpha compare
EX31_RS11470 -3.7 -3.6 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
EX31_RS07585 -3.7 -10.0 bifunctional chorismate mutase/prephenate dehydratase compare
EX31_RS22625 -3.7 -3.5 5-(carboxyamino)imidazole ribonucleotide mutase compare
EX31_RS02515 -3.6 -3.5 PAS domain-containing protein compare
EX31_RS02530 -3.6 -4.2 ABC transporter ATP-binding protein compare
EX31_RS07870 -3.6 -11.3 adenylyl-sulfate kinase compare
EX31_RS07900 -3.6 -18.3 assimilatory sulfite reductase (NADPH) hemoprotein subunit compare
EX31_RS14310 -3.5 -4.7 6-phosphofructokinase compare
EX31_RS09855 -3.4 -6.0 orotidine-5'-phosphate decarboxylase compare
EX31_RS18255 -3.4 -2.3 3-phosphoserine/phosphohydroxythreonine transaminase compare
EX31_RS18095 -3.4 -7.1 quinone-dependent dihydroorotate dehydrogenase compare
EX31_RS03680 -3.4 -15.5 2-isopropylmalate synthase compare
EX31_RS08720 -3.4 -16.6 3'(2'),5'-bisphosphate nucleotidase CysQ compare
EX31_RS11460 -3.3 -4.4 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
EX31_RS20495 -3.2 -9.4 outer membrane protein assembly factor BamB compare
EX31_RS07590 -3.2 -2.2 bifunctional chorismate mutase/prephenate dehydrogenase compare
EX31_RS20450 -3.2 -6.4 IMP dehydrogenase compare
EX31_RS07880 -3.2 -19.4 sulfate adenylyltransferase subunit CysD compare
EX31_RS07875 -3.2 -19.9 sulfate adenylyltransferase subunit CysN compare
EX31_RS03035 -3.1 -10.8 LysE family transporter compare
EX31_RS14340 -3.0 -2.0 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
EX31_RS11445 -3.0 -9.3 histidinol-phosphate transaminase compare
EX31_RS24385 -3.0 -4.8 dihydroorotase compare
EX31_RS07785 -2.9 -2.0 carbon storage regulator CsrA compare
EX31_RS15870 -2.9 -2.0 glutamate--ammonia ligase compare
EX31_RS14335 -2.9 -2.0 serine O-acetyltransferase compare
EX31_RS12785 -2.8 -13.5 aspartate carbamoyltransferase compare
EX31_RS05830 -2.7 -19.0 PTS mannitol transporter subunit IICBA conserved
EX31_RS13935 -2.7 -12.9 phosphoenolpyruvate synthase compare
EX31_RS23440 -2.7 -1.9 2-oxoglutarate dehydrogenase E1 component compare
EX31_RS08745 -2.7 -2.5 50S ribosomal protein L9 compare
EX31_RS22245 -2.6 -4.3 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
EX31_RS21400 -2.6 -4.7 transketolase compare
EX31_RS21850 -2.6 -2.9 pyridoxine 5'-phosphate synthase compare
EX31_RS12875 -2.5 -2.4 D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase compare
EX31_RS03030 -2.5 -12.2 helix-turn-helix transcriptional regulator compare
EX31_RS03480 -2.4 -1.7 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
EX31_RS07955 -2.4 -15.9 GTP diphosphokinase compare
EX31_RS04645 -2.4 -1.2 DUF2559 family protein compare
EX31_RS18540 -2.4 -2.2 cysteine/glutathione ABC transporter permease/ATP-binding protein CydD compare
EX31_RS23500 -2.4 -5.1 peptidoglycan-associated lipoprotein Pal compare
EX31_RS03775 -2.3 -4.6 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
EX31_RS22250 -2.2 -4.8 ATP-dependent protease ATP-binding subunit ClpX compare
EX31_RS03040 -2.2 -9.1 hypothetical protein compare
EX31_RS06055 -2.1 -3.7 phosphate ABC transporter ATP-binding protein PstB compare
EX31_RS23485 -2.0 -2.9 colicin uptake protein TolR compare
EX31_RS14730 -2.0 -1.4 DUF2756 domain-containing protein compare
EX31_RS03400 -1.8 -5.5 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase compare
EX31_RS13045 -1.8 -12.0 bifunctional uridylyltransferase/uridylyl-removing protein GlnD compare
EX31_RS19655 -1.8 -5.4 beta-ketoacyl-ACP synthase I compare
EX31_RS22430 -1.8 -2.2 hemolysin expression modulator Hha compare
EX31_RS20530 -1.8 -7.2 nucleoside-diphosphate kinase compare
EX31_RS07595 -1.7 -7.1 3-deoxy-7-phosphoheptulonate synthase compare
EX31_RS20735 -1.7 -4.0 exodeoxyribonuclease V subunit beta compare
EX31_RS04630 -1.7 -11.6 aspartate aminotransferase family protein compare
EX31_RS23495 -1.7 -6.5 Tol-Pal system protein TolB compare
EX31_RS04105 -1.7 -2.6 helix-turn-helix domain-containing protein compare
EX31_RS00920 -1.7 -2.3 DUF1493 family protein compare
EX31_RS08150 -1.6 -11.9 inorganic triphosphatase compare
EX31_RS06060 -1.6 -4.1 phosphate ABC transporter permease PstA compare
EX31_RS02525 -1.6 -6.8 ABC transporter permease compare
EX31_RS11435 -1.5 -4.5 ATP phosphoribosyltransferase compare
EX31_RS11335 -1.5 -1.9 flagellar protein FlhE compare
EX31_RS19600 -1.5 -6.3 tRNA pseudouridine(38-40) synthase TruA compare
EX31_RS18525 -1.5 -2.4 DNA translocase FtsK compare
EX31_RS05910 -1.4 -10.7 LacI family DNA-binding transcriptional regulator compare
EX31_RS23490 -1.4 -1.9 cell envelope integrity protein TolA compare
EX31_RS09470 -1.4 -3.8 flagella biosynthesis regulatory protein FliT compare
EX31_RS25340 -1.4 -4.0 hypothetical protein compare
EX31_RS06070 -1.4 -7.2 phosphate ABC transporter substrate-binding protein PstS compare
EX31_RS05010 -1.4 -11.7 glycogen synthase GlgA compare
EX31_RS07415 -1.4 -1.9 bifunctional diguanylate cyclase/phosphodiesterase compare
EX31_RS19610 -1.4 -6.2 4-phosphoerythronate dehydrogenase PdxB compare
EX31_RS25410 -1.4 -1.6 transposase compare
EX31_RS11815 -1.4 -8.8 glucose-6-phosphate isomerase compare
EX31_RS25370 -1.4 -8.0 HTH-type transcriptional regulator MetR compare
EX31_RS09700 -1.3 -3.3 GlpM family protein compare
EX31_RS11675 -1.3 -1.7 Holliday junction branch migration protein RuvA compare
EX31_RS25415 -1.3 -1.2 helix-turn-helix domain-containing protein compare
EX31_RS09915 -1.3 -6.5 cob(I)yrinic acid a,c-diamide adenosyltransferase compare
EX31_RS09465 -1.3 -4.1 flagellar export chaperone FliS compare
EX31_RS06065 -1.2 -6.1 phosphate ABC transporter permease PstC compare
EX31_RS22690 -1.2 -7.3 phosphoribosylglycinamide formyltransferase compare
EX31_RS19205 -1.2 -2.7 50S ribosomal protein L25 compare
EX31_RS20670 -1.2 -1.2 RNA chaperone/antiterminator CspA compare
EX31_RS03710 -1.2 -1.8 glucose uptake inhibitor SgrT compare
EX31_RS22740 -1.2 -6.7 4-hydroxy-tetrahydrodipicolinate synthase compare
EX31_RS08515 -1.2 -9.4 lipoprotein NlpI compare
EX31_RS04925 -1.2 -3.1 Fe-S biogenesis protein NfuA compare
EX31_RS03665 -1.2 -9.9 acetolactate synthase 3 large subunit compare
EX31_RS24655 -1.2 -2.2 hypothetical protein compare
EX31_RS03660 -1.1 -7.9 acetolactate synthase small subunit compare
EX31_RS25100 -1.1 -1.9 PAAR domain-containing protein compare
EX31_RS10115 -1.1 -6.5 formyltetrahydrofolate deformylase compare
EX31_RS20190 -1.1 -1.5 PTS glucose transporter subunit IIA compare
EX31_RS03920 -1.1 -5.5 transaldolase compare
EX31_RS09775 -1.1 -1.7 (4S)-4-hydroxy-5-phosphonooxypentane-2,3-dione isomerase compare
EX31_RS07885 -1.1 -6.7 uroporphyrinogen-III C-methyltransferase compare
EX31_RS20205 -1.1 -4.1 cysteine synthase CysM compare
EX31_RS06140 -1.1 -7.4 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
EX31_RS18115 -1.1 -4.0 aliphatic sulfonate ABC transporter permease SsuC compare
EX31_RS00600 -1.1 -2.6 DUF1471 domain-containing protein compare
EX31_RS19420 -1.1 -2.3 NADH-quinone oxidoreductase subunit NuoE compare
EX31_RS15155 -1.1 -2.0 diaminopimelate epimerase compare
EX31_RS24605 -1.1 -2.6 hypothetical protein compare
EX31_RS06635 -1.1 -2.9 L-arabinose isomerase compare
EX31_RS02325 -1.0 -2.1 GNAT family N-acetyltransferase compare
EX31_RS10515 -1.0 -3.6 disulfide bond formation protein DsbB compare
EX31_RS19780 -1.0 -5.1 tRNA-Arg compare
EX31_RS10635 -1.0 -6.0 MurR/RpiR family transcriptional regulator compare
EX31_RS18785 -1.0 -3.2 DUF2384 domain-containing protein compare
EX31_RS15865 -1.0 -8.1 ribosome-dependent GTPase TypA compare
EX31_RS09565 -1.0 -0.9 flagellar hook-length control protein FliK compare
EX31_RS19405 -1.0 -2.4 NADH-quinone oxidoreductase subunit NuoH compare
EX31_RS18120 -1.0 -2.2 aliphatic sulfonates ABC transporter ATP-binding protein compare
EX31_RS11760 -1.0 -8.8 methionine synthase compare
EX31_RS23315 -1.0 -4.1 replication initiation negative regulator SeqA compare
EX31_RS24645 -1.0 -1.9 DUF2591 domain-containing protein compare
EX31_RS26075 -0.9 -1.3 hypothetical protein compare
EX31_RS10355 -0.9 -2.7 NUDIX domain-containing protein compare
EX31_RS24325 -0.9 -2.2 LpxL/LpxP family Kdo(2)-lipid IV(A) lauroyl/palmitoleoyl acyltransferasee compare
EX31_RS25365 -0.9 -1.1 50S ribosomal protein L31 compare
EX31_RS24375 -0.9 -1.9 biofilm formation regulator BssS compare
EX31_RS07750 -0.9 -6.5 glutamate--cysteine ligase compare
EX31_RS09790 -0.9 -2.5 autoinducer 2 ABC transporter permease LsrD compare
EX31_RS25450 -0.9 -2.9 helix-turn-helix domain-containing protein compare
EX31_RS15000 -0.9 -6.0 branched-chain amino acid transaminase compare
EX31_RS19690 -0.9 -2.9 50S ribosomal protein L3 N(5)-glutamine methyltransferase compare
EX31_RS18600 -0.9 -2.6 ubiquinone-dependent pyruvate dehydrogenase compare
EX31_RS16625 -0.9 -0.7 bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase compare
EX31_RS25125 -0.9 -2.1 thr operon leader peptide compare
EX31_RS01760 -0.9 -3.4 hypothetical protein compare
EX31_RS11065 -0.9 -3.9 TetR/AcrR family transcriptional regulator compare
EX31_RS07465 -0.9 -2.6 LysR family transcriptional regulator compare
EX31_RS13870 -0.9 -1.2 pyruvate kinase PykF compare
EX31_RS10025 -0.9 -2.2 hypothetical protein compare
EX31_RS21805 -0.9 -1.9 anti-sigma-E factor RseA compare


Specific Phenotypes

For 6 genes in this experiment

For carbon source D-Mannitol in Rahnella sp. WP5

For carbon source D-Mannitol across organisms