Experiment set2IT089 for Pantoea sp. MT58

Compare to:

Aluminum potassium sulfate dodecahydrate 1 mM, anaerobic

200 most important genes:

  gene name fitness t score description  
IAI47_09040 -5.5 -3.9 NAD-dependent epimerase compare
IAI47_17965 -5.2 -19.1 glucose-6-phosphate isomerase compare
IAI47_17225 -4.8 -24.2 sulfite reductase subunit alpha compare
IAI47_09185 -4.7 -7.2 glutamine amidotransferase compare
IAI47_13685 -4.5 -3.4 Tol-Pal system protein TolB compare
IAI47_04120 -4.1 -20.4 GTP diphosphokinase compare
IAI47_00600 -4.0 -14.2 orotate phosphoribosyltransferase compare
IAI47_17220 -4.0 -26.9 glutamate synthase large subunit compare
IAI47_00895 -3.9 -19.8 phosphoenolpyruvate carboxylase compare
IAI47_09180 -3.9 -14.1 anthranilate phosphoribosyltransferase compare
IAI47_05420 -3.8 -2.2 PTS glucose transporter subunit IIA compare
IAI47_15635 -3.8 -3.6 RNA polymerase-binding protein DksA compare
IAI47_16350 -3.8 -11.6 phosphoserine phosphatase compare
IAI47_16860 -3.8 -15.8 aspartate carbamoyltransferase compare
IAI47_07070 -3.8 -7.9 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
IAI47_03725 -3.8 -11.0 phosphoglycerate dehydrogenase compare
IAI47_13770 -3.7 -13.8 citrate synthase compare
IAI47_18040 -3.7 -18.2 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
IAI47_07085 -3.6 -15.6 histidinol-phosphate transaminase compare
IAI47_18045 -3.6 -13.7 phosphoribosylamine--glycine ligase compare
IAI47_17185 -3.6 -8.0 RNA polymerase factor sigma-54 compare
IAI47_00460 -3.6 -2.4 glutamate--ammonia ligase compare
IAI47_09580 -3.6 -5.1 FNR family transcription factor compare
IAI47_09275 -3.5 -11.1 orotidine-5'-phosphate decarboxylase compare
IAI47_07090 -3.5 -11.2 histidinol dehydrogenase compare
IAI47_16205 -3.5 -8.2 threonine synthase compare
IAI47_07080 -3.5 -10.0 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
IAI47_00920 -3.4 -15.7 argininosuccinate lyase compare
IAI47_07065 -3.4 -11.0 imidazole glycerol phosphate synthase subunit HisF compare
IAI47_05275 -3.4 -6.2 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
IAI47_00915 -3.4 -14.1 argininosuccinate synthase compare
IAI47_00300 -3.4 -2.2 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
IAI47_07075 -3.4 -9.2 imidazole glycerol phosphate synthase subunit HisH compare
IAI47_05180 -3.4 -13.1 phosphoribosylformylglycinamidine cyclo-ligase compare
IAI47_09240 -3.4 -2.3 HTH-type transcriptional regulator CysB compare
IAI47_09190 -3.3 -14.0 anthranilate synthase component 1 compare
IAI47_17215 -3.3 -1.5 aerobic respiration two-component sensor histidine kinase ArcB compare
IAI47_12705 -3.3 -11.7 quinone-dependent dihydroorotate dehydrogenase compare
IAI47_00780 -3.3 -4.5 6-phosphofructokinase compare
IAI47_00735 -3.3 -3.2 protein-export chaperone SecB compare
IAI47_12215 -3.3 -14.4 dihydroorotase compare
IAI47_14945 -3.2 -3.8 pyrroline-5-carboxylate reductase compare
IAI47_18015 -3.2 -14.0 homoserine O-succinyltransferase compare
IAI47_10520 -3.2 -5.2 pyridoxamine 5'-phosphate oxidase compare
IAI47_01030 -3.2 -13.5 branched-chain amino acid transaminase compare
IAI47_09055 -3.2 -14.5 bifunctional acetaldehyde-CoA/alcohol dehydrogenase compare
IAI47_07165 -3.2 -3.6 exodeoxyribonuclease I compare
IAI47_09175 -3.1 -11.7 bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF compare
IAI47_00910 -3.1 -9.4 acetylglutamate kinase compare
IAI47_09170 -3.1 -15.1 tryptophan synthase subunit beta compare
IAI47_15110 -3.1 -7.8 chromophore lyase compare
IAI47_01035 -3.1 -17.1 dihydroxy-acid dehydratase compare
IAI47_05070 -3.1 -1.5 outer membrane protein assembly factor BamB compare
IAI47_03975 -3.1 -13.9 amino-acid N-acetyltransferase compare
IAI47_04930 -3.1 -17.2 phosphoribosylformylglycinamidine synthase compare
IAI47_03860 -3.1 -12.2 diaminopimelate decarboxylase compare
IAI47_12865 -3.1 -13.7 3-phosphoserine/phosphohydroxythreonine transaminase compare
IAI47_01050 -3.1 -16.5 ketol-acid reductoisomerase compare
IAI47_05440 -3.1 -10.8 cysteine synthase A compare
IAI47_06235 -3.1 -7.9 4-phosphoerythronate dehydrogenase PdxB compare
IAI47_16080 -3.1 -8.7 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
IAI47_05425 -3.0 -6.4 phosphoenolpyruvate-protein phosphotransferase PtsI compare
IAI47_00880 -3.0 -12.9 cystathionine gamma-synthase compare
IAI47_12885 -3.0 -9.5 pyruvate formate lyase 1-activating protein compare
IAI47_16115 -3.0 -17.8 carbamoyl-phosphate synthase large subunit compare
IAI47_13900 -3.0 -14.3 asparagine synthase B compare
IAI47_16010 -3.0 -13.2 3-isopropylmalate dehydratase large subunit compare
IAI47_15120 -3.0 -9.3 glutamate 5-kinase compare
IAI47_06275 -2.9 -15.7 amidophosphoribosyltransferase compare
IAI47_12880 -2.9 -17.0 formate C-acetyltransferase compare
IAI47_11450 -2.8 -8.2 ankyrin repeat domain-containing protein compare
IAI47_07060 -2.8 -8.0 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
IAI47_09165 -2.8 -9.0 tryptophan synthase subunit alpha compare
IAI47_16015 -2.8 -5.4 3-isopropylmalate dehydratase small subunit compare
IAI47_01040 -2.8 -9.5 threonine ammonia-lyase, biosynthetic compare
IAI47_15115 -2.7 -11.1 glutamate-5-semialdehyde dehydrogenase compare
IAI47_07095 -2.7 -8.7 ATP phosphoribosyltransferase compare
IAI47_16120 -2.6 -9.1 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit compare
IAI47_14350 -2.6 -6.4 5-(carboxyamino)imidazole ribonucleotide mutase compare
IAI47_16830 -2.6 -10.8 ornithine carbamoyltransferase compare
IAI47_00890 -2.6 -9.6 methylenetetrahydrofolate reductase compare
IAI47_16210 -2.5 -8.9 homoserine kinase compare
IAI47_04410 -2.5 -12.9 bifunctional chorismate mutase/prephenate dehydratase compare
IAI47_12645 -2.5 -8.8 porin OmpA compare
IAI47_16005 -2.4 -9.3 3-isopropylmalate dehydrogenase compare
IAI47_16000 -2.3 -13.4 2-isopropylmalate synthase compare
IAI47_00465 -2.3 -5.6 ribosome-dependent GTPase TypA compare
IAI47_00905 -2.3 -8.9 N-acetyl-gamma-glutamyl-phosphate reductase compare
IAI47_04895 -2.3 -4.0 pyridoxine 5'-phosphate synthase compare
IAI47_13485 -2.2 -5.0 cyclic pyranopterin monophosphate synthase MoaC compare
IAI47_16215 -2.2 -12.4 bifunctional aspartate kinase/homoserine dehydrogenase I compare
IAI47_17005 -2.1 -8.9 polyribonucleotide nucleotidyltransferase compare
IAI47_09010 -2.1 -6.5 formyltetrahydrofolate deformylase compare
IAI47_13690 -2.1 -1.4 cell envelope integrity protein TolA compare
IAI47_16870 -2.1 -6.0 2-iminobutanoate/2-iminopropanoate deaminase compare
IAI47_12030 -2.1 -10.7 PTS glucose transporter subunit IIBC compare
IAI47_13145 -2.1 -6.5 molybdopterin-synthase adenylyltransferase MoeB compare
IAI47_17020 -2.0 -3.9 30S ribosome-binding factor RbfA compare
IAI47_21655 -2.0 -0.9 LacI family DNA-binding transcriptional regulator compare
IAI47_10320 -2.0 -1.2 Rrf2 family transcriptional regulator compare
IAI47_06320 -1.9 -6.7 phosphate acetyltransferase compare
IAI47_14355 -1.9 -7.9 5-(carboxyamino)imidazole ribonucleotide synthase compare
IAI47_04705 -1.9 -1.8 hypothetical protein compare
IAI47_10725 -1.9 -2.1 DUF1656 domain-containing protein compare
IAI47_12915 -1.9 -7.0 leucine-responsive transcriptional regulator Lrp compare
IAI47_04835 -1.8 -7.2 ATP-dependent RNA helicase SrmB compare
IAI47_13475 -1.8 -4.5 molybdopterin synthase catalytic subunit MoaE compare
IAI47_04260 -1.7 -10.3 nitrate reductase subunit beta compare
IAI47_04265 -1.7 -7.7 nitrate reductase molybdenum cofactor assembly chaperone compare
IAI47_00410 -1.7 -8.4 molybdenum cofactor guanylyltransferase MobA compare
IAI47_04255 -1.7 -12.3 nitrate reductase subunit alpha compare
IAI47_18315 -1.7 -6.5 HTH-type transcriptional regulator MetR compare
IAI47_13495 -1.7 -5.1 GTP 3',8-cyclase MoaA compare
IAI47_04160 -1.7 -7.4 phosphoadenylyl-sulfate reductase compare
IAI47_08445 -1.6 -1.5 Holliday junction branch migration protein RuvA compare
IAI47_01955 -1.6 -8.2 aspartate aminotransferase family protein compare
IAI47_00655 -1.6 -6.8 glycosyltransferase family 4 protein compare
IAI47_10925 -1.6 -3.5 EAL domain-containing protein compare
IAI47_06245 -1.6 -2.9 tRNA pseudouridine(38-40) synthase TruA compare
IAI47_17255 -1.6 -1.6 DUF1043 family protein compare
IAI47_12875 -1.6 -6.4 formate transporter FocA compare
IAI47_06325 -1.5 -4.1 acetate kinase compare
IAI47_06980 -1.5 -2.8 colanic acid biosynthesis pyruvyl transferase WcaK compare
IAI47_05155 -1.5 -9.5 polyphosphate kinase 1 compare
IAI47_05765 -1.4 -2.0 hypothetical protein compare
IAI47_13140 -1.4 -4.9 molybdopterin molybdotransferase MoeA compare
IAI47_00445 -1.4 -7.2 oxygen-independent coproporphyrinogen III oxidase compare
IAI47_12790 -1.4 -0.8 chromosome partition protein MukE compare
IAI47_08450 -1.4 -2.8 Holliday junction branch migration DNA helicase RuvB compare
IAI47_09305 -1.4 -2.4 cyclic di-GMP phosphodiesterase compare
IAI47_00455 -1.3 -5.8 nitrogen regulation protein NR(II) compare
IAI47_06370 -1.3 -4.4 NADH-quinone oxidoreductase subunit C/D compare
IAI47_03855 -1.3 -5.5 LysR family transcriptional regulator compare
IAI47_04270 -1.3 -5.6 respiratory nitrate reductase subunit gamma compare
IAI47_15540 -1.3 -6.5 bifunctional uridylyltransferase/uridylyl-removing protein GlnD compare
IAI47_18435 -1.3 -8.9 uroporphyrinogen-III C-methyltransferase compare
IAI47_11310 -1.3 -2.8 redox-regulated ATPase YchF compare
IAI47_11515 -1.2 -1.5 hypothetical protein compare
IAI47_10840 -1.2 -3.6 pyruvate kinase PykF compare
IAI47_13310 -1.2 -3.6 MerR family transcriptional regulator compare
IAI47_19045 -1.2 -2.7 two-component-system connector protein YcgZ compare
IAI47_15600 -1.2 -1.7 Fe(3+)-hydroxamate ABC transporter substrate-binding protein FhuD compare
IAI47_02695 -1.2 -5.9 3'(2'),5'-bisphosphate nucleotidase CysQ compare
IAI47_15155 -1.2 -3.0 DUF943 family protein compare
IAI47_08085 -1.1 -2.9 helix-turn-helix domain-containing protein compare
IAI47_14730 -1.1 -0.9 exodeoxyribonuclease VII small subunit compare
IAI47_08040 -1.1 -2.0 hypothetical protein compare
IAI47_04155 -1.1 -6.3 assimilatory sulfite reductase (NADPH) hemoprotein subunit compare
IAI47_20625 -1.1 -2.0 DUF2946 domain-containing protein compare
IAI47_19710 -1.1 -2.1 helix-turn-helix transcriptional regulator compare
IAI47_18820 -1.1 -3.4 helix-turn-helix domain-containing protein compare
IAI47_01005 -1.1 -7.0 DUF413 domain-containing protein compare
IAI47_06680 -1.1 -3.1 LysR family transcriptional regulator compare
IAI47_13840 -1.1 -2.3 replication initiation negative regulator SeqA compare
IAI47_04350 -1.1 -6.8 glutamate--cysteine ligase compare
IAI47_08355 -1.0 -2.9 flagellar protein FlhE compare
IAI47_18400 -1.0 -1.7 tyrosine recombinase XerC compare
IAI47_14470 -1.0 -1.5 YbaB/EbfC family nucleoid-associated protein compare
IAI47_15595 -1.0 -1.0 Fe(3+)-hydroxamate ABC transporter permease FhuB compare
IAI47_03375 -1.0 -5.2 peptide chain release factor 3 compare
IAI47_08300 -1.0 -5.8 chemotaxis protein CheA compare
IAI47_18675 -1.0 -4.1 MarR family transcriptional regulator compare
IAI47_08325 -1.0 -4.6 protein-glutamate O-methyltransferase CheR compare
IAI47_12275 -1.0 -7.5 glucans biosynthesis glucosyltransferase MdoH compare
IAI47_06395 -1.0 -0.8 NADH-quinone oxidoreductase subunit NuoI compare
IAI47_16190 -1.0 -3.4 molybdopterin adenylyltransferase compare
IAI47_18310 -1.0 -6.8 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase compare
IAI47_16995 -0.9 -1.2 protein YrbN compare
IAI47_13480 -0.9 -1.1 molybdopterin synthase sulfur carrier subunit compare
IAI47_11935 -0.9 -7.4 two-component system sensor histidine kinase PhoQ compare
IAI47_13545 -0.9 -4.6 6-phosphogluconolactonase compare
IAI47_08625 -0.9 -2.2 hypothetical protein compare
IAI47_04150 -0.9 -5.8 NADPH-dependent assimilatory sulfite reductase flavoprotein subunit compare
IAI47_04250 -0.9 -6.1 NarK family nitrate/nitrite MFS transporter compare
IAI47_18055 -0.9 -3.7 DNA-binding protein HU-alpha compare
IAI47_01045 -0.9 -3.7 HTH-type transcriptional activator IlvY compare
IAI47_00900 -0.9 -5.1 acetylornithine deacetylase compare
IAI47_00450 -0.9 -5.5 nitrogen regulation protein NR(I) compare
IAI47_13180 -0.9 -3.3 manganese-binding transcriptional regulator MntR compare
IAI47_04425 -0.9 -4.4 23S rRNA pseudouridine(1911/1915/1917) synthase RluD compare
IAI47_05195 -0.9 -1.3 DnaA inactivator Hda compare
IAI47_16220 -0.9 -2.3 thr operon leader peptide compare
IAI47_04870 -0.9 -2.9 elongation factor 4 compare
IAI47_21765 -0.9 -1.1 YoeB-YefM toxin-antitoxin system antitoxin YefM compare
IAI47_08305 -0.9 -3.8 chemotaxis protein CheW compare
IAI47_20250 -0.8 -2.0 DeoR family transcriptional regulator compare
IAI47_11630 -0.8 -2.1 hypothetical protein compare
IAI47_07515 -0.8 -3.2 hypothetical protein compare
IAI47_03685 -0.8 -4.2 erythrose-4-phosphate dehydrogenase compare
IAI47_13950 -0.8 -0.7 PhoH family protein compare
IAI47_18530 -0.8 -1.1 thioredoxin TrxA compare
IAI47_13885 -0.8 -0.9 N-acetylglucosamine-6-phosphate deacetylase compare
IAI47_01000 -0.8 -6.1 HTH-type transcriptional regulator HdfR compare
IAI47_03240 -0.8 -2.0 TonB system transport protein ExbD compare
IAI47_14400 -0.8 -5.4 copper-exporting P-type ATPase CopA compare
IAI47_04245 -0.8 -3.6 two-component system response regulator NarL compare
IAI47_21450 -0.8 -0.7 general stress protein compare
IAI47_21680 -0.8 -1.3 hypothetical protein compare
IAI47_03615 -0.8 -3.2 glutathione synthase compare
IAI47_01365 -0.8 -1.0 inorganic phosphate transporter PitA compare


Specific Phenotypes

None in this experiment

For Pantoea sp. MT58 in stress experiments

For stress Aluminum potassium sulfate dodecahydrate across organisms