Experiment set2IT089 for Sphingomonas koreensis DSMZ 15582

Compare to:

LB with Chloramphenicol 0.0005 mg/ml

200 most detrimental genes:

  gene name fitness t score description  
Ga0059261_3356 +0.9 1.8 hypothetical protein compare
Ga0059261_1860 +0.8 1.6 Transposase compare
Ga0059261_3604 +0.7 3.2 Uncharacterized protein conserved in bacteria compare
Ga0059261_3451 +0.7 1.9 hypothetical protein compare
Ga0059261_0344 +0.7 2.3 Molecular chaperone (small heat shock protein) compare
Ga0059261_4013 +0.6 1.3 hypothetical protein compare
Ga0059261_3271 +0.6 1.1 arsenate reductase (glutaredoxin) compare
Ga0059261_0087 +0.6 2.0 hypothetical protein compare
Ga0059261_3280 +0.6 1.1 Uncharacterized conserved protein compare
Ga0059261_1035 +0.6 1.3 hypothetical protein compare
Ga0059261_2663 +0.6 1.3 Domain of unknown function (DUF718) compare
Ga0059261_0827 +0.6 2.0 hypothetical protein compare
Ga0059261_2063 +0.6 2.3 Flagellar biosynthesis protein, FliO compare
Ga0059261_2680 +0.5 0.9 hypothetical protein compare
Ga0059261_3437 +0.5 1.2 hypothetical protein compare
Ga0059261_1569 +0.5 1.9 Response regulator receiver domain compare
Ga0059261_0208 +0.5 2.2 Response regulator receiver domain compare
Ga0059261_0433 +0.5 1.4 Uncharacterized protein conserved in bacteria compare
Ga0059261_4054 +0.5 1.4 Uncharacterized protein conserved in bacteria compare
Ga0059261_2285 +0.5 1.1 Fe2+ transport system protein A compare
Ga0059261_1724 +0.5 1.8 hypothetical protein compare
Ga0059261_1774 +0.5 1.2 hypothetical protein compare
Ga0059261_0875 +0.5 1.2 Leucyl aminopeptidase compare
Ga0059261_3579 +0.5 2.3 hypothetical protein compare
Ga0059261_2913 +0.5 1.4 Type IV secretory pathway, VirB2 components (pilins) compare
Ga0059261_0464 +0.5 1.2 hypothetical protein compare
Ga0059261_1261 +0.5 0.8 hypothetical protein compare
Ga0059261_1772 +0.5 1.0 MobA/MobL family compare
Ga0059261_3904 +0.5 1.6 Predicted membrane protein compare
Ga0059261_1757 +0.5 2.3 Protein of unknown function (DUF4007) compare
Ga0059261_1612 +0.5 1.0 hypothetical protein compare
Ga0059261_0393 +0.4 1.4 hypothetical protein compare
Ga0059261_0267 +0.4 1.2 Predicted membrane protein compare
Ga0059261_3882 +0.4 1.7 dimethyladenosine transferase (EC 2.1.1.-) compare
Ga0059261_3227 +0.4 1.0 GTP-binding protein YchF compare
Ga0059261_0596 +0.4 1.8 Cation efflux family compare
Ga0059261_3885 +0.4 1.4 K+-transporting ATPase, C subunit compare
Ga0059261_2713 +0.4 0.8 hypothetical protein compare
Ga0059261_3703 +0.4 2.2 Uncharacterized conserved protein compare
Ga0059261_3668 +0.4 2.1 ABC transporter compare
Ga0059261_2951 +0.4 1.2 Heavy-metal resistance compare
Ga0059261_1610 +0.4 2.0 CBS domain/Transporter associated domain compare
Ga0059261_3441 +0.4 1.6 hypothetical protein compare
Ga0059261_1291 +0.4 1.7 transcriptional regulator, HxlR family compare
Ga0059261_3801 +0.4 1.5 Phosphate/sulphate permeases compare
Ga0059261_0911 +0.4 1.2 Domain of unknown function (DUF3597) compare
Ga0059261_3285 +0.3 1.3 Acyl dehydratase compare
Ga0059261_2090 +0.3 2.0 flagellar basal-body rod protein FlgC compare
Ga0059261_3872 +0.3 1.5 Outer membrane protein compare
Ga0059261_3287 +0.3 2.7 Topoisomerase IB compare
Ga0059261_3210 +0.3 1.1 Organic radical activating enzymes compare
Ga0059261_0028 +0.3 1.6 Predicted transcriptional regulators compare
Ga0059261_2992 +0.3 1.5 Biopolymer transport protein compare
Ga0059261_1050 +0.3 0.8 hypothetical protein compare
Ga0059261_0853 +0.3 1.4 peroxiredoxin, Ohr subfamily compare
Ga0059261_2237 +0.3 2.2 Protein of unknown function (DUF1674) compare
Ga0059261_1097 +0.3 1.5 Flagellar basal body protein compare
Ga0059261_1217 +0.3 0.7 MobA/MobL family compare
Ga0059261_0980 +0.3 1.9 polyhydroxyalkanoate synthesis repressor PhaR compare
Ga0059261_0850 +0.3 1.0 hypothetical protein compare
Ga0059261_3928 +0.3 1.4 Predicted thioesterase compare
Ga0059261_0102 +0.3 2.3 endopeptidase La compare
Ga0059261_2648 +0.3 1.2 Transcriptional regulators compare
Ga0059261_1527 +0.3 0.7 hypothetical protein compare
Ga0059261_3048 +0.3 1.3 Transcriptional regulators compare
Ga0059261_2935 +0.3 1.7 hypothetical protein compare
Ga0059261_3297 +0.3 2.1 Uncharacterized protein conserved in bacteria compare
Ga0059261_1962 +0.3 1.1 RNase HII (EC 3.1.26.4) compare
Ga0059261_0400 +0.3 1.1 hypothetical protein compare
Ga0059261_4029 +0.3 1.7 hypothetical protein compare
Ga0059261_1195 +0.3 1.5 Co/Zn/Cd efflux system component compare
Ga0059261_0930 +0.3 1.9 indole-3-glycerol phosphate synthase (EC 4.1.1.48) compare
Ga0059261_3233 +0.3 1.7 Uncharacterized protein conserved in bacteria compare
Ga0059261_0244 +0.3 1.2 FOG: CheY-like receiver compare
Ga0059261_3368 +0.3 1.6 Predicted transcriptional regulator compare
Ga0059261_0738 +0.3 1.6 Predicted transcriptional regulators compare
Ga0059261_3064 +0.3 1.0 hypothetical protein compare
Ga0059261_0880 +0.3 1.9 Tetratricopeptide repeat compare
Ga0059261_0935 +0.3 1.4 Uncharacterized conserved protein compare
Ga0059261_3445 +0.3 1.7 PHP domain compare
Ga0059261_3432 +0.3 1.0 leucyl/phenylalanyl-tRNA--protein transferase compare
Ga0059261_2080 +0.3 1.8 Uncharacterized enzyme involved in biosynthesis of extracellular polysaccharides compare
Ga0059261_1478 +0.3 1.0 Predicted dioxygenase of extradiol dioxygenase family compare
Ga0059261_1098 +0.3 1.7 Helix-turn-helix compare
Ga0059261_2746 +0.3 1.4 Predicted sugar nucleotidyltransferases compare
Ga0059261_2973 +0.3 1.5 hypothetical protein compare
Ga0059261_3400 +0.3 2.2 diguanylate cyclase (GGDEF) domain compare
Ga0059261_3503 +0.3 1.6 hypothetical protein compare
Ga0059261_2086 +0.3 0.6 SAF-like compare
Ga0059261_0673 +0.3 1.3 hypothetical protein compare
Ga0059261_1016 +0.3 1.0 Cupin domain compare
Ga0059261_3581 +0.3 1.6 Alpha/beta hydrolase family compare
Ga0059261_0411 +0.3 0.9 Uncharacterized conserved protein compare
Ga0059261_1114 +0.3 1.0 hypothetical protein compare
Ga0059261_0032 +0.3 0.9 Protein of unknown function, DUF488 compare
Ga0059261_0085 +0.3 2.0 hypothetical protein compare
Ga0059261_0745 +0.3 1.1 Uncharacterized membrane protein, required for colicin V production compare
Ga0059261_2068 +0.3 1.3 hypothetical protein compare
Ga0059261_2956 +0.3 1.7 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Ga0059261_3605 +0.3 0.9 tRNA compare
Ga0059261_2862 +0.3 1.8 Protein of unknown function (DUF2889) compare
Ga0059261_3440 +0.3 0.5 hypothetical protein compare
Ga0059261_2558 +0.3 1.6 DoxX-like family compare
Ga0059261_3785 +0.3 1.1 hypothetical protein compare
Ga0059261_1570 +0.3 1.5 N-formylglutamate amidohydrolase compare
Ga0059261_0444 +0.3 0.9 Heavy-metal resistance compare
Ga0059261_2101 +0.2 1.1 Putative transposase of IS4/5 family (DUF4096) compare
Ga0059261_4215 +0.2 1.4 Predicted N-formylglutamate amidohydrolase compare
Ga0059261_0493 +0.2 0.6 hypothetical protein compare
Ga0059261_3491 +0.2 1.7 hypothetical protein compare
Ga0059261_0141 +0.2 1.2 transcriptional regulator, LysR family compare
Ga0059261_0272 +0.2 0.8 Uncharacterized small protein compare
Ga0059261_4185 +0.2 0.5 hypothetical protein compare
Ga0059261_1181 +0.2 1.0 hypothetical protein compare
Ga0059261_1743 +0.2 0.9 hypothetical protein compare
Ga0059261_0631 +0.2 1.1 adenosylcobinamide kinase (EC 2.7.1.156)/adenosylcobinamide-phosphate guanylyltransferase (EC 2.7.7.62) compare
Ga0059261_2445 +0.2 1.2 hypothetical protein compare
Ga0059261_0266 +0.2 0.4 hypothetical protein compare
Ga0059261_1737 +0.2 1.4 hypothetical protein compare
Ga0059261_0451 +0.2 0.9 hypothetical protein compare
Ga0059261_3781 +0.2 1.0 hypothetical protein compare
Ga0059261_3631 +0.2 1.4 hypothetical protein compare
Ga0059261_0359 +0.2 1.3 transcriptional regulator, HxlR family compare
Ga0059261_2737 +0.2 1.5 UTP--GlnB (protein PII) uridylyltransferase, GlnD compare
Ga0059261_3021 +0.2 1.4 hypothetical protein compare
Ga0059261_0829 +0.2 1.7 Transcriptional regulators compare
Ga0059261_0025 +0.2 1.5 hypothetical protein compare
Ga0059261_1939 +0.2 0.5 putative phosphoesterase compare
Ga0059261_3721 +0.2 1.3 hypothetical protein compare
Ga0059261_3025 +0.2 1.2 Methylase involved in ubiquinone/menaquinone biosynthesis compare
Ga0059261_1057 +0.2 0.8 hypothetical protein compare
Ga0059261_2613 +0.2 1.6 AraC-type DNA-binding domain-containing proteins compare
Ga0059261_2368 +0.2 0.6 Phage baseplate assembly protein W compare
Ga0059261_1833 +0.2 1.1 hypothetical protein compare
Ga0059261_1588 +0.2 1.6 Methyltransferase domain compare
Ga0059261_0260 +0.2 1.4 hypothetical protein compare
Ga0059261_0723 +0.2 0.9 hypothetical protein compare
Ga0059261_3507 +0.2 1.9 His Kinase A (phospho-acceptor) domain/Response regulator receiver domain/Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase/CHASE3 domain compare
Ga0059261_0720 +0.2 0.8 Predicted small integral membrane protein compare
Ga0059261_1595 +0.2 2.1 Membrane protein involved in the export of O-antigen and teichoic acid compare
Ga0059261_0599 +0.2 1.4 glucose-1-phosphate cytidylyltransferase compare
Ga0059261_2966 +0.2 1.0 2-deoxy-D-gluconate 3-dehydrogenase compare
Ga0059261_3215 +0.2 1.6 hypothetical protein compare
Ga0059261_1972 +0.2 1.2 Domain of unknown function (DUF3814) compare
Ga0059261_3909 +0.2 0.9 Predicted membrane protein compare
Ga0059261_1290 +0.2 1.8 PAS domain S-box/diguanylate cyclase (GGDEF) domain compare
Ga0059261_3219 +0.2 1.1 ubiquinol-cytochrome c reductase, iron-sulfur subunit compare
Ga0059261_3427 +0.2 1.3 Uncharacterized conserved protein compare
Ga0059261_1624 +0.2 1.6 2-keto-3-deoxy-galactonokinase compare
Ga0059261_4167 +0.2 1.3 Outer membrane protein and related peptidoglycan-associated (lipo)proteins compare
Ga0059261_2053 +0.2 1.4 Mg2+ and Co2+ transporters compare
Ga0059261_1334 +0.2 1.0 Uncharacterized protein, possibly involved in aromatic compounds catabolism compare
Ga0059261_0139 +0.2 1.5 Signal transduction histidine kinase, nitrogen specific compare
Ga0059261_2589 +0.2 1.1 Protein of unknown function (DUF2493) compare
Ga0059261_0690 +0.2 0.8 Acetyltransferases compare
Ga0059261_1092 +0.2 0.6 flagellar motor switch protein FliN compare
Ga0059261_0084 +0.2 0.7 hypothetical protein compare
Ga0059261_3442 +0.2 0.8 HTH domain compare
Ga0059261_3367 +0.2 0.8 hypothetical protein compare
Ga0059261_2858 +0.2 1.3 Enoyl-CoA hydratase/carnithine racemase compare
Ga0059261_2302 +0.2 1.4 Acetyltransferase (GNAT) domain compare
Ga0059261_1517 +0.2 1.2 Predicted acetyltransferase compare
Ga0059261_3694 +0.2 1.8 threonine deaminase (EC 4.3.1.19) (from data) compare
Ga0059261_0896 +0.2 1.3 Citrate lyase beta subunit compare
Ga0059261_1126 +0.2 0.9 Response regulator compare
Ga0059261_3659 +0.2 1.2 PqqD family protein, HPr-rel-A system compare
Ga0059261_2365 +0.2 0.8 Mu-like prophage FluMu protein gp41 compare
Ga0059261_3243 +0.2 1.4 Flp pilus assembly protein, secretin CpaC compare
Ga0059261_0811 +0.2 0.8 Archaeal fructose-1,6-bisphosphatase and related enzymes of inositol monophosphatase family compare
Ga0059261_3622 +0.2 1.1 hypothetical protein compare
Ga0059261_3144 +0.2 0.7 Transcriptional regulator compare
Ga0059261_2071 +0.2 1.0 flagellar motor switch protein FliG compare
Ga0059261_2118 +0.2 1.4 flagellar motor stator protein MotA compare
Ga0059261_2097 +0.2 0.9 Rod binding protein compare
Ga0059261_2722 +0.2 1.8 Predicted acyltransferases compare
Ga0059261_3947 +0.2 0.7 type II secretion system protein I (GspI) compare
Ga0059261_0268 +0.2 1.0 Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily compare
Ga0059261_4122 +0.2 0.8 Gluconate 2-dehydrogenase subunit 3 compare
Ga0059261_0843 +0.2 1.4 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
Ga0059261_4192 +0.2 0.6 ATPases involved in chromosome partitioning compare
Ga0059261_2823 +0.2 1.4 Probable taurine catabolism dioxygenase compare
Ga0059261_1508 +0.2 1.4 Tetratricopeptide repeat compare
Ga0059261_3496 +0.2 0.6 Uncharacterized protein conserved in bacteria compare
Ga0059261_1373 +0.2 1.5 pyrimidine 5'-nucleotidase compare
Ga0059261_0586 +0.2 0.8 hypothetical protein compare
Ga0059261_3006 +0.2 1.0 hypothetical protein compare
Ga0059261_2882 +0.2 1.3 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
Ga0059261_0200 +0.2 1.4 Xaa-Pro aminopeptidase compare
Ga0059261_3898 +0.2 0.9 hypothetical protein compare
Ga0059261_2751 +0.2 1.0 Uncharacterized protein conserved in bacteria compare
Ga0059261_3139 +0.2 1.1 Predicted membrane protein compare
Ga0059261_0215 +0.2 1.1 Acetyltransferase (GNAT) family compare
Ga0059261_1894 +0.2 1.0 D-xylose 1-dehydrogenase (EC 1.1.1.175) (from data) compare
Ga0059261_1652 +0.2 0.4 L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily compare
Ga0059261_0225 +0.2 1.7 polyphosphate kinase 1 compare
Ga0059261_1859 +0.2 1.2 Enolase C-terminal domain-like compare
Ga0059261_1516 +0.2 1.3 Glutathione S-transferase compare
Ga0059261_3647 +0.2 1.3 hypothetical protein compare
Ga0059261_3058 +0.2 1.1 hypothetical protein compare
Ga0059261_1131 +0.2 1.2 flagellar protein export ATPase FliI compare


Specific Phenotypes

None in this experiment

For Sphingomonas koreensis DSMZ 15582 in stress experiments

For stress Chloramphenicol across organisms