Experiment set2IT089 for Cupriavidus basilensis FW507-4G11

Compare to:

L-Valine nitrogen source

200 most important genes:

  gene name fitness t score description  
RR42_RS01385 -6.9 -4.7 5,10-methylenetetrahydrofolate reductase compare
RR42_RS18305 -6.5 -4.5 anthranilate phosphoribosyltransferase compare
RR42_RS05860 -6.3 -4.3 phospho-2-dehydro-3-deoxyheptonate aldolase compare
RR42_RS14400 -6.0 -4.1 isopropylmalate isomerase compare
RR42_RS16265 -6.0 -4.9 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
RR42_RS19005 -5.9 -4.1 3-dehydroquinate synthase compare
RR42_RS14365 -5.8 -4.0 N-(5'-phosphoribosyl)anthranilate isomerase compare
RR42_RS06485 -5.7 -6.7 chorismate synthase compare
RR42_RS26900 -5.6 -3.8 enoyl-CoA hydratase compare
RR42_RS18300 -5.6 -5.4 anthranilate synthase subunit II compare
RR42_RS16255 -5.5 -7.5 sulfate adenylyltransferase compare
RR42_RS16275 -5.5 -3.8 membrane protein compare
RR42_RS00955 -5.3 -6.3 hydroxymethylglutaryl-CoA lyase compare
RR42_RS16250 -5.3 -7.2 sulfate adenylyltransferase compare
RR42_RS15890 -4.9 -8.2 heme biosynthesis protein HemY compare
RR42_RS01160 -4.8 -9.9 homoserine O-acetyltransferase compare
RR42_RS16245 -4.7 -5.6 uroporphyrin-III methyltransferase compare
RR42_RS12040 -4.5 -10.8 MFS transporter compare
RR42_RS18295 -4.4 -12.8 anthranilate synthase component I compare
RR42_RS15905 -4.3 -12.3 phosphoenolpyruvate carboxylase compare
RR42_RS04475 -4.2 -8.6 3-phosphoshikimate 1-carboxyvinyltransferase compare
RR42_RS16965 -4.2 -6.3 ABC transporter compare
RR42_RS26905 -4.1 -8.2 methylcrotonoyl-CoA carboxylase compare
RR42_RS16270 -4.0 -11.1 sulfite reductase compare
RR42_RS33260 -4.0 -8.4 multidrug MFS transporter compare
RR42_RS26895 -4.0 -6.6 3-methylcrotonyl-CoA carboxylase compare
RR42_RS12980 -3.8 -4.9 chemotaxis protein CheY compare
RR42_RS14390 -3.8 -4.9 3-isopropylmalate dehydratase compare
RR42_RS30655 -3.7 -6.6 LysR family transcriptional regulator compare
RR42_RS33250 -3.6 -8.0 tyrosine protein kinase compare
RR42_RS16280 -3.5 -5.3 transcriptional regulator compare
RR42_RS11790 -3.4 -7.3 phosphoenolpyruvate synthase compare
RR42_RS17645 -3.4 -8.4 shikimate dehydrogenase compare
RR42_RS14385 -3.4 -5.0 3-isopropylmalate dehydrogenase compare
RR42_RS02705 -3.4 -3.0 Holliday junction DNA helicase RuvA compare
RR42_RS17105 -3.3 -11.5 Clp protease ClpX compare
RR42_RS18855 -3.3 -4.5 preprotein translocase compare
RR42_RS05990 -3.3 -8.6 aromatic amino acid aminotransferase compare
RR42_RS16960 -3.3 -5.9 ABC transporter ATP-binding protein compare
RR42_RS30660 -3.3 -8.4 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase compare
RR42_RS01845 -3.3 -2.0 glycerol-3-phosphate dehydrogenase compare
RR42_RS07605 -3.2 -6.8 poly-beta-hydroxybutyrate polymerase compare
RR42_RS04535 -3.2 -5.7 cysteine synthase compare
RR42_RS18990 -3.2 -17.0 glutamate synthase compare
RR42_RS15895 -3.0 -6.0 uroporphyrinogen III methyltransferase compare
RR42_RS05465 -3.0 -9.4 2-isopropylmalate synthase compare
RR42_RS14360 -2.9 -1.6 tryptophan synthase subunit alpha compare
RR42_RS02085 -2.9 -7.7 RNA polymerase subunit sigma-54 compare
RR42_RS03095 -2.8 -2.8 succinyl-CoA synthetase subunit beta compare
RR42_RS01290 -2.8 -4.5 thiamine biosynthesis protein ThiC compare
RR42_RS16980 -2.8 -14.0 branched-chain amino acid ABC transporter substrate-binding protein compare
RR42_RS04460 -2.8 -5.2 chorismate mutase compare
RR42_RS11795 -2.7 -1.4 PEP synthetase regulatory protein compare
RR42_RS12985 -2.7 -5.8 histidine kinase compare
RR42_RS14320 -2.7 -3.8 O-succinylhomoserine sulfhydrylase compare
RR42_RS13265 -2.7 -4.2 GntR family transcriptional regulator compare
RR42_RS33240 -2.6 -13.8 GDP-L-fucose synthase compare
RR42_RS16970 -2.6 -9.3 ABC transporter ATP-binding protein compare
RR42_RS15410 -2.6 -6.4 membrane protein compare
RR42_RS16240 -2.6 -1.5 cobalamin biosynthesis protein CbiX compare
RR42_RS33245 -2.5 -9.4 mannose-1-phosphate guanyltransferase compare
RR42_RS16975 -2.5 -6.7 ABC transporter permease compare
RR42_RS18985 -2.5 -5.7 glutamate synthase compare
RR42_RS33235 -2.5 -10.6 GDP-mannose 4,6-dehydratase compare
RR42_RS20205 -2.4 -3.6 chromosome partitioning protein compare
RR42_RS19010 -2.4 -4.8 shikimate kinase compare
RR42_RS12015 -2.4 -2.6 dihydrolipoamide acyltransferase compare
RR42_RS11885 -2.4 -8.9 (protein-PII) uridylyltransferase compare
RR42_RS21220 -2.4 -2.8 iron transporter FeoB compare
RR42_RS11275 -2.4 -6.5 3-methylitaconate isomerase compare
RR42_RS14055 -2.3 -3.8 elongation factor 4 compare
RR42_RS02250 -2.3 -3.7 GntR family transcriptional regulator compare
RR42_RS04700 -2.3 -2.0 ribonuclease G compare
RR42_RS08000 -2.3 -1.7 hypothetical protein compare
RR42_RS12925 -2.3 -3.4 ATPase compare
RR42_RS12550 -2.2 -3.8 hypothetical protein compare
RR42_RS06875 -2.2 -3.2 hypothetical protein compare
RR42_RS37400 -2.1 -1.6 6-phosphogluconolactonase compare
RR42_RS24605 -2.1 -8.0 TetR family transcriptional regulator compare
RR42_RS00115 -2.1 -2.3 hypothetical protein compare
RR42_RS33355 -2.1 -5.5 membrane protein compare
RR42_RS04895 -2.1 -9.8 serine/threonine protein phosphatase compare
RR42_RS28545 -2.0 -5.9 3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4) (from data) conserved
RR42_RS19090 -2.0 -2.0 cytochrome C compare
RR42_RS23125 -1.9 -1.8 hypothetical protein compare
RR42_RS02045 -1.9 -10.1 GTPase compare
RR42_RS05955 -1.9 -1.6 hypothetical protein compare
RR42_RS18310 -1.9 -1.5 indole-3-glycerol-phosphate synthase compare
RR42_RS17060 -1.9 -11.4 histidine kinase compare
RR42_RS14790 -1.9 -7.0 cobalamin biosynthesis protein CobD compare
RR42_RS36400 -1.8 -1.6 hypothetical protein compare
RR42_RS11270 -1.8 -10.1 aconitate hydratase compare
RR42_RS01775 -1.8 -5.5 glutamate--cysteine ligase compare
RR42_RS21295 -1.8 -2.5 L-lactate dehydrogenase, LutA subunit (from data) compare
RR42_RS30630 -1.7 -6.9 AsnC family transcriptional regulator compare
RR42_RS00940 -1.7 -8.1 biotin synthase compare
RR42_RS18930 -1.7 -2.8 BolA family transcriptional regulator compare
RR42_RS01380 -1.7 -2.0 membrane protein compare
RR42_RS06250 -1.7 -2.4 dihydrodipicolinate synthase compare
RR42_RS33255 -1.6 -1.1 protein-tyrosine phosphatase compare
RR42_RS03910 -1.6 -2.1 (2Fe-2S)-binding protein compare
RR42_RS02320 -1.6 -2.9 trehalose phosphatase compare
RR42_RS06095 -1.6 -4.1 hypothetical protein compare
RR42_RS15640 -1.6 -1.1 hypothetical protein compare
RR42_RS26915 -1.6 -5.4 AMP-binding protein compare
RR42_RS21280 -1.6 -7.3 L-lactate permease compare
RR42_RS24690 -1.6 -1.5 hypothetical protein compare
RR42_RS33210 -1.5 -4.9 teichoic acid biosynthesis protein compare
RR42_RS17055 -1.5 -6.3 LuxR family transcriptional regulator compare
RR42_RS07365 -1.5 -2.6 pyruvate dehydrogenase compare
RR42_RS17390 -1.5 -6.6 ATP-dependent DNA helicase RecG compare
RR42_RS18820 -1.5 -5.0 cytochrome B compare
RR42_RS07565 -1.5 -6.6 transcription accessory protein compare
RR42_RS18825 -1.4 -3.4 ubiquinol-cytochrome C reductase compare
RR42_RS19410 -1.4 -4.7 GntR family transcriptional regulator compare
RR42_RS04470 -1.4 -2.8 prephenate dehydrogenase compare
RR42_RS00790 -1.4 -6.3 chemotaxis protein CheY compare
RR42_RS11255 -1.4 -5.8 Fis family transcriptional regulator compare
RR42_RS12545 -1.4 -7.6 aminotransferase compare
RR42_RS11280 -1.4 -1.7 phenylacetic acid degradation protein compare
RR42_RS05920 -1.4 -2.4 HrcA family transcriptional regulator compare
RR42_RS21290 -1.4 -4.0 L-lactate dehydrogenase, LutC subunit (from data) compare
RR42_RS15245 -1.4 -2.6 alpha/beta hydrolase compare
RR42_RS15420 -1.4 -2.7 hypothetical protein compare
RR42_RS17235 -1.4 -6.4 poly(A) polymerase compare
RR42_RS31495 -1.3 -1.3 Cro/Cl family transcriptional regulator compare
RR42_RS21300 -1.3 -5.6 GntR family transcriptional regulator compare
RR42_RS15460 -1.3 -4.6 translocation protein TolB compare
RR42_RS05695 -1.3 -4.7 pyridoxal-5'-phosphate-dependent protein subunit beta compare
RR42_RS18140 -1.3 -1.4 MarR family transcriptional regulator compare
RR42_RS05890 -1.3 -6.8 glutamine-synthetase adenylyltransferase compare
RR42_RS02500 -1.3 -1.9 TetR family transcriptional regulator compare
RR42_RS21435 -1.3 -3.5 hypothetical protein compare
RR42_RS01780 -1.3 -5.4 glutathione synthetase compare
RR42_RS14395 -1.3 -1.5 entericidin compare
RR42_RS07555 -1.3 -2.1 potassium transporter Kup compare
RR42_RS17050 -1.3 -4.6 phosphoribosylglycinamide formyltransferase compare
RR42_RS20195 -1.3 -1.2 ATPase F0F1 compare
RR42_RS22275 -1.3 -2.3 hypothetical protein compare
RR42_RS23845 -1.3 -2.2 hypothetical protein compare
RR42_RS10310 -1.3 -2.0 NADPH:quinone reductase compare
RR42_RS28560 -1.3 -4.8 methylmalonate-semialdehyde dehydrogenase compare
RR42_RS04135 -1.3 -1.5 pilus assembly protein CpaB compare
RR42_RS07360 -1.2 -2.5 ATPase compare
RR42_RS34650 -1.2 -3.4 LacI family transcriptional regulator compare
RR42_RS31285 -1.2 -1.8 XRE family transcriptional regulator compare
RR42_RS06555 -1.2 -3.0 3-oxoacid CoA-transferase (EC 2.8.3.5), subunit A (from data) compare
RR42_RS14965 -1.2 -2.4 hypothetical protein compare
RR42_RS11785 -1.2 -1.6 NfeD-like family protein 1 compare
RR42_RS31530 -1.2 -2.8 histidine kinase compare
RR42_RS27700 -1.2 -1.7 hypothetical protein compare
RR42_RS01920 -1.2 -2.5 protoheme IX farnesyltransferase compare
RR42_RS24535 -1.2 -1.3 tRNA-Asn compare
RR42_RS34395 -1.2 -1.7 hypothetical protein compare
RR42_RS15015 -1.2 -1.1 exodeoxyribonuclease VII small subunit compare
RR42_RS15415 -1.2 -1.4 membrane protein compare
RR42_RS17720 -1.2 -1.6 sugar kinase compare
RR42_RS18850 -1.2 -1.4 preprotein translocase subunit TatC compare
RR42_RS24760 -1.2 -1.1 hypothetical protein compare
RR42_RS18270 -1.2 -2.8 murein transglycosylase compare
RR42_RS00950 -1.1 -2.2 glyoxylate reductase compare
RR42_RS22890 -1.1 -3.8 TetR family transcriptional regulator compare
RR42_RS06225 -1.1 -4.5 phosphoesterase compare
RR42_RS13620 -1.1 -1.0 ferredoxin compare
RR42_RS26590 -1.1 -1.5 hypothetical protein compare
RR42_RS10365 -1.1 -1.5 ABC transporter compare
RR42_RS18815 -1.1 -3.1 cytochrome C compare
RR42_RS33575 -1.1 -1.9 hypothetical protein compare
RR42_RS16260 -1.1 -0.6 phosphoadenosine phosphosulfate reductase compare
RR42_RS31435 -1.1 -1.2 hypothetical protein compare
RR42_RS19825 -1.1 -2.9 LysR family transcriptional regulator compare
RR42_RS32590 -1.1 -1.2 cytochrome o ubiquinol oxidase subunit III compare
RR42_RS29865 -1.0 -1.7 hypothetical protein compare
RR42_RS00420 -1.0 -3.0 hypothetical protein compare
RR42_RS02785 -1.0 -1.8 dimethyladenosine transferase compare
RR42_RS08165 -1.0 -1.5 hypothetical protein compare
RR42_RS19445 -1.0 -3.7 TetR family transcriptional regulator compare
RR42_RS00600 -1.0 -1.6 DeoR family transcriptional regulator compare
RR42_RS35220 -1.0 -1.6 peptide ABC transporter ATP-binding protein compare
RR42_RS13910 -1.0 -4.0 glutamate racemase compare
RR42_RS23110 -1.0 -1.4 isochorismatase compare
RR42_RS18670 -1.0 -3.4 metal-dependent hydrolase compare
RR42_RS08365 -1.0 -4.5 hypothetical protein compare
RR42_RS19540 -1.0 -7.2 branched-chain alpha-ketoacid:ferredoxin oxidoreductase, fused (EC 1.2.7.7) (from data) conserved
RR42_RS16950 -1.0 -3.3 CDP-6-deoxy-delta-3,4-glucoseen reductase compare
RR42_RS22295 -1.0 -1.5 methionine sulfoxide reductase B compare
RR42_RS14915 -1.0 -2.6 hypothetical protein compare
RR42_RS03080 -1.0 -1.9 recombinase RecA compare
RR42_RS10195 -1.0 -1.3 hypothetical protein compare
RR42_RS06630 -1.0 -1.3 integration host factor subunit alpha compare
RR42_RS12990 -1.0 -2.1 hypothetical protein compare
RR42_RS16415 -1.0 -4.0 TetR family transcriptional regulator compare
RR42_RS28290 -1.0 -2.5 DNA-binding protein compare
RR42_RS21040 -1.0 -0.9 hypothetical protein compare
RR42_RS00925 -1.0 -3.8 adenosylmethionine--8-amino-7-oxononanoate aminotransferase BioA compare
RR42_RS17510 -1.0 -5.4 chemotaxis protein CheY compare
RR42_RS21285 -1.0 -3.7 L-lactate dehydrogenase, LutB subunit (from data) compare
RR42_RS00625 -1.0 -1.2 hypothetical protein compare
RR42_RS35720 -1.0 -2.1 flagellar basal body rod protein FlgC compare
RR42_RS34060 -1.0 -1.6 alpha/beta hydrolase compare


Specific Phenotypes

For 3 genes in this experiment

For nitrogen source L-Valine in Cupriavidus basilensis FW507-4G11

For nitrogen source L-Valine across organisms