Experiment set2IT089 for Cupriavidus basilensis FW507-4G11

Compare to:

L-Valine nitrogen source

200 most detrimental genes:

  gene name fitness t score description  
RR42_RS01785 +1.8 9.1 PTS fructose transporter subunit IIA compare
RR42_RS21470 +1.6 2.0 hypothetical protein compare
RR42_RS26080 +1.5 1.9 hypothetical protein compare
RR42_RS04850 +1.5 3.0 hypothetical protein compare
RR42_RS01795 +1.5 10.5 phosphoenolpyruvate-protein phosphotransferase compare
RR42_RS05425 +1.3 5.4 membrane protein compare
RR42_RS32710 +1.3 3.0 hypothetical protein compare
RR42_RS23305 +1.2 2.1 hypothetical protein compare
RR42_RS17805 +1.1 1.4 hypothetical protein compare
RR42_RS09555 +1.1 1.8 universal stress protein UspA compare
RR42_RS30765 +1.1 1.5 tRNA-Arg compare
RR42_RS00440 +1.1 0.9 hypothetical protein compare
RR42_RS31505 +1.1 2.8 hypothetical protein compare
RR42_RS08220 +1.1 2.1 hypothetical protein compare
RR42_RS32960 +1.1 2.5 2-dehydropantoate 2-reductase compare
RR42_RS06255 +1.1 2.6 lipoprotein compare
RR42_RS07920 +1.1 2.0 cyclophilin-like superfamily protein compare
RR42_RS26265 +1.0 1.7 hypothetical protein compare
RR42_RS01750 +1.0 8.2 hypothetical protein compare
RR42_RS06890 +1.0 1.7 hypothetical protein compare
RR42_RS08185 +1.0 1.2 hypothetical protein compare
RR42_RS00410 +1.0 3.7 transcriptional regulator compare
RR42_RS35725 +1.0 1.5 flagellar biosynthesis protein FlgB compare
RR42_RS30250 +1.0 1.9 peptide ABC transporter compare
RR42_RS14425 +1.0 7.7 leucine ABC transporter substrate-binding protein compare
RR42_RS35900 +1.0 5.3 hypothetical protein compare
RR42_RS30735 +1.0 2.1 tRNA-Met compare
RR42_RS02420 +1.0 1.4 SAM-dependent methyltransferase compare
RR42_RS33495 +1.0 7.9 L-phenylalanine:H+ symporter AroP (from data) compare
RR42_RS08770 +0.9 1.1 2-nitropropane dioxygenase compare
RR42_RS08470 +0.9 1.6 hypothetical protein compare
RR42_RS03680 +0.9 3.2 hypothetical protein compare
RR42_RS32670 +0.9 1.7 phenol hydroxylase compare
RR42_RS04810 +0.9 2.2 glycine/betaine ABC transporter permease compare
RR42_RS27120 +0.9 1.3 amino acid ABC transporter permease compare
RR42_RS20370 +0.9 1.4 pterin-4-alpha-carbinolamine dehydratase compare
RR42_RS17355 +0.8 0.9 hypothetical protein compare
RR42_RS07450 +0.8 3.9 ABC transporter permease compare
RR42_RS03525 +0.8 1.3 type VI secretion system effector compare
RR42_RS37045 +0.8 1.3 thiamine biosynthesis protein ApbE compare
RR42_RS23595 +0.8 1.5 dTDP-4-dehydrorhamnose 3,5-epimerase compare
RR42_RS36245 +0.8 2.6 excisionase compare
RR42_RS17850 +0.8 2.2 thioredoxin compare
RR42_RS23250 +0.8 2.4 glyoxalase compare
RR42_RS33500 +0.8 5.4 4-hydroxyphenylpyruvate dioxygenase compare
RR42_RS24785 +0.8 3.1 NAD-dependent dehydratase compare
RR42_RS14885 +0.8 1.2 DNA-directed RNA polymerase sigma-70 factor compare
RR42_RS15770 +0.8 3.9 hypothetical protein compare
RR42_RS18725 +0.8 1.5 hypothetical protein compare
RR42_RS13730 +0.8 2.3 TetR family transcriptional regulator compare
RR42_RS03685 +0.8 1.8 GTP cyclohydrolase compare
RR42_RS23870 +0.8 2.2 hypothetical protein compare
RR42_RS05905 +0.8 1.3 hypothetical protein compare
RR42_RS30285 +0.7 2.2 amidohydrolase compare
RR42_RS14415 +0.7 4.2 leucine/isoleucine/valine transporter permease subunit compare
RR42_RS15790 +0.7 3.0 aminotransferase class III compare
RR42_RS17425 +0.7 4.2 chemotaxis protein CheY compare
RR42_RS00345 +0.7 1.7 LysR family transcriptional regulator compare
RR42_RS35140 +0.7 1.8 2-hydroxylaminobenzoate mutase compare
RR42_RS14420 +0.7 4.3 branched-chain amino acid transporter permease subunit LivH compare
RR42_RS16185 +0.7 2.3 malonyl-CoA decarboxylase compare
RR42_RS22855 +0.7 4.2 sulfate transporter compare
RR42_RS14405 +0.7 2.3 leucine/isoleucine/valine transporter ATP-binding subunit compare
RR42_RS07455 +0.7 4.5 ABC transporter substrate-binding protein compare
RR42_RS03925 +0.7 2.3 hypothetical protein compare
RR42_RS02215 +0.7 2.5 fumarate reductase compare
RR42_RS19635 +0.7 1.4 hypothetical protein compare
RR42_RS31020 +0.7 1.9 hypothetical protein compare
RR42_RS13685 +0.7 1.4 cupin compare
RR42_RS13420 +0.7 2.0 phosphohistidine phosphatase compare
RR42_RS06735 +0.7 1.0 hypothetical protein compare
RR42_RS03635 +0.7 1.8 trypsin-like serine protease compare
RR42_RS10835 +0.7 2.4 hypothetical protein compare
RR42_RS01315 +0.7 2.4 GNAT family acetyltransferase compare
RR42_RS34220 +0.7 5.6 pyruvate dehydrogenase compare
RR42_RS02470 +0.7 1.8 dihydroneopterin triphosphate pyrophosphatase compare
RR42_RS22940 +0.7 1.7 TetR family transcriptional regulator compare
RR42_RS33940 +0.6 2.9 naphthalene 1,2-dioxygenase compare
RR42_RS02930 +0.6 1.4 AsnC family transcriptional regulator compare
RR42_RS20145 +0.6 1.2 CoA-binding protein compare
RR42_RS01320 +0.6 2.4 ATPase AAA compare
RR42_RS32085 +0.6 0.9 hypothetical protein compare
RR42_RS07130 +0.6 0.8 hypothetical protein compare
RR42_RS28400 +0.6 1.1 CoA-transferase compare
RR42_RS05945 +0.6 1.0 thioredoxin compare
RR42_RS15290 +0.6 1.7 cupin compare
RR42_RS10490 +0.6 2.2 DNA-binding protein compare
RR42_RS27035 +0.6 1.3 hypothetical protein compare
RR42_RS11370 +0.6 4.2 ABC transporter ATP-binding protein compare
RR42_RS03485 +0.6 1.8 type VI secretion protein compare
RR42_RS31135 +0.6 1.5 hypothetical protein compare
RR42_RS32655 +0.6 1.5 catechol 2,3-dioxygenase compare
RR42_RS02270 +0.6 1.3 hypothetical protein compare
RR42_RS29425 +0.6 2.4 enoyl-CoA hydratase compare
RR42_RS20525 +0.6 3.6 LuxR family transcriptional regulator compare
RR42_RS19750 +0.6 0.7 MBL fold metallo-hydrolase compare
RR42_RS20530 +0.6 4.7 phosphoenolpyruvate carboxykinase compare
RR42_RS22845 +0.6 1.6 cell envelope biogenesis protein OmpA compare
RR42_RS20515 +0.6 5.2 large component of pyruvate transporter (cstA-like) (from data) compare
RR42_RS21825 +0.6 1.5 hypothetical protein compare
RR42_RS23605 +0.6 2.0 CDP-glucose 4,6-dehydratase compare
RR42_RS04645 +0.6 2.6 rhodanese superfamily protein compare
RR42_RS15755 +0.6 1.9 acetyltransferase compare
RR42_RS27210 +0.6 2.0 hypothetical protein compare
RR42_RS32700 +0.6 2.3 alpha/beta hydrolase compare
RR42_RS30980 +0.6 1.3 hypothetical protein compare
RR42_RS12235 +0.6 1.8 terminase compare
RR42_RS03380 +0.6 2.0 glucose-6-phosphate isomerase compare
RR42_RS28455 +0.6 1.3 LysR family transcriptional regulator compare
RR42_RS12310 +0.6 2.3 alkyl hydroperoxide reductase compare
RR42_RS17620 +0.6 1.8 phosphatidylglycerophosphatase compare
RR42_RS09360 +0.6 1.4 alpha/beta hydrolase compare
RR42_RS22595 +0.6 1.7 LysR family transcriptional regulator compare
RR42_RS25015 +0.6 1.3 gluconolactonase compare
RR42_RS16570 +0.6 1.5 2-nitropropane dioxygenase compare
RR42_RS27230 +0.6 1.0 DNA-binding protein compare
RR42_RS21850 +0.6 1.3 3-oxoadipate enol-lactonase compare
RR42_RS08690 +0.6 2.2 hypothetical protein compare
RR42_RS15135 +0.6 1.8 LysR family transcriptional regulator compare
RR42_RS26620 +0.6 1.9 hypothetical protein compare
RR42_RS06740 +0.6 1.1 hypothetical protein compare
RR42_RS26455 +0.5 0.8 amino acid ABC transporter ATP-binding protein compare
RR42_RS20855 +0.5 2.4 cold-shock protein compare
RR42_RS20775 +0.5 0.8 hypothetical protein compare
RR42_RS06020 +0.5 0.6 Fe-S cluster assembly transcriptional regulator IscR compare
RR42_RS36920 +0.5 1.4 TetR family transcriptional regulator compare
RR42_RS09240 +0.5 0.8 MFS transporter compare
RR42_RS20365 +0.5 3.7 phenylalanine-4-hydroxylase compare
RR42_RS24945 +0.5 2.4 hypothetical protein compare
RR42_RS04965 +0.5 2.2 hypothetical protein compare
RR42_RS13865 +0.5 1.0 hypothetical protein compare
RR42_RS00785 +0.5 1.8 LuxR family transcriptional regulator compare
RR42_RS22040 +0.5 1.7 Hcp family T6SS protein CtsH1 compare
RR42_RS23915 +0.5 0.9 hypothetical protein compare
RR42_RS14410 +0.5 1.5 leucine/isoleucine/valine transporter ATP-binding subunit compare
RR42_RS09105 +0.5 2.5 5-oxoprolinase compare
RR42_RS15825 +0.5 3.6 capsular biosynthesis protein compare
RR42_RS32110 +0.5 1.9 peptide ABC transporter permease compare
RR42_RS34450 +0.5 2.1 glycosyl transferase compare
RR42_RS33430 +0.5 1.2 LysR family transcriptional regulator compare
RR42_RS10150 +0.5 1.1 hypothetical protein compare
RR42_RS06355 +0.5 2.0 Fe-S cluster assembly protein HesB compare
RR42_RS07040 +0.5 1.5 hypothetical protein compare
RR42_RS35190 +0.5 3.4 LacI family transcriptional regulator compare
RR42_RS28305 +0.5 2.6 L-threonine:H+ symporter (from data) compare
RR42_RS31245 +0.5 1.6 membrane protein compare
RR42_RS04735 +0.5 0.9 hypothetical protein compare
RR42_RS15985 +0.5 1.7 formate dehydrogenase compare
RR42_RS28955 +0.5 1.9 transcriptional regulator compare
RR42_RS17820 +0.5 1.9 recombinase RdgC compare
RR42_RS23995 +0.5 1.3 hypothetical protein compare
RR42_RS00975 +0.5 2.2 MBL fold metallo-hydrolase compare
RR42_RS19830 +0.5 1.0 LysR family transcriptional regulator compare
RR42_RS27065 +0.5 0.9 hypothetical protein compare
RR42_RS20570 +0.5 0.6 biopolymer transporter ExbD compare
RR42_RS23230 +0.5 1.0 glycerate kinase compare
RR42_RS33815 +0.5 0.6 isochorismatase compare
RR42_RS06315 +0.5 1.6 RNA methyltransferase compare
RR42_RS34440 +0.5 1.7 hypothetical protein compare
RR42_RS23560 +0.5 2.6 flagellar assembly protein FliH compare
RR42_RS28200 +0.5 2.5 membrane protein compare
RR42_RS26050 +0.5 1.3 hypothetical protein compare
RR42_RS31900 +0.5 0.9 short-chain dehydrogenase compare
RR42_RS20310 +0.5 0.7 copper-binding protein compare
RR42_RS30105 +0.5 1.8 taurine dioxygenase compare
RR42_RS07590 +0.5 2.7 pseudouridine synthase compare
RR42_RS06585 +0.5 4.2 GTP pyrophosphokinase compare
RR42_RS24950 +0.5 2.1 TetR family transcriptional regulator compare
RR42_RS00310 +0.5 2.4 TetR family transcriptional regulator compare
RR42_RS12345 +0.5 1.1 hypothetical protein compare
RR42_RS32740 +0.5 0.6 enoyl-CoA hydratase compare
RR42_RS09460 +0.5 2.7 hypothetical protein compare
RR42_RS20320 +0.5 1.3 ornithine cyclodeaminase compare
RR42_RS20295 +0.5 0.9 alpha/beta hydrolase compare
RR42_RS29505 +0.5 0.9 hypothetical protein compare
RR42_RS10500 +0.5 2.6 hypothetical protein compare
RR42_RS00550 +0.5 2.4 hypothetical protein compare
RR42_RS06565 +0.5 1.1 metal-binding protein compare
RR42_RS03370 +0.5 1.9 fructose ABC transporter, substrate-binding component (FrcB) (from data) compare
RR42_RS22920 +0.5 2.2 hypothetical protein compare
RR42_RS11605 +0.5 1.7 OsmY domain-containing protein compare
RR42_RS18805 +0.5 1.3 peptidase compare
RR42_RS07150 +0.5 0.6 hypothetical protein compare
RR42_RS30195 +0.5 1.7 MarR family transcriptional regulator compare
RR42_RS14570 +0.5 2.8 Ala-tRNA(Pro) hydrolase compare
RR42_RS20810 +0.5 1.1 hypothetical protein compare
RR42_RS21075 +0.5 0.6 phosphoribosyltransferase compare
RR42_RS26085 +0.5 1.4 acetoacetyl-CoA reductase compare
RR42_RS07505 +0.5 2.1 benzoyl-CoA oxygenase compare
RR42_RS20520 +0.5 3.8 histidine kinase compare
RR42_RS10410 +0.5 1.4 hypothetical protein compare
RR42_RS06855 +0.5 1.6 hypothetical protein compare
RR42_RS02745 +0.5 3.0 Xaa-Pro aminopeptidase compare
RR42_RS28425 +0.5 1.1 3-hydroxybutyryl-CoA dehydratase compare
RR42_RS13185 +0.5 2.6 RNA polymerase sigma factor RpoS compare
RR42_RS21415 +0.5 2.6 hypothetical protein compare
RR42_RS06205 +0.5 1.7 hypothetical protein compare
RR42_RS23185 +0.5 2.4 membrane protein compare
RR42_RS20260 +0.5 1.1 hypothetical protein compare
RR42_RS24520 +0.5 1.4 hypothetical protein compare


Specific Phenotypes

For 3 genes in this experiment

For nitrogen source L-Valine in Cupriavidus basilensis FW507-4G11

For nitrogen source L-Valine across organisms