Experiment set2IT089 for Burkholderia phytofirmans PsJN

Compare to:

outer cut, LB soft agar motility assay

200 most important genes:

  gene name fitness t score description  
BPHYT_RS18865 -7.5 -3.1 flagellar L-ring protein FlgH compare
BPHYT_RS18795 -6.1 -6.4 flagellar export protein FliJ compare
BPHYT_RS14865 -6.0 -3.1 UDP-glucose 6-dehydrogenase compare
BPHYT_RS18945 -5.9 -8.3 flagellar biosynthesis protein FlhB compare
BPHYT_RS18800 -5.8 -6.9 flagellar hook-length control protein compare
BPHYT_RS19085 -5.7 -7.2 flagellin compare
BPHYT_RS18785 -5.7 -1.5 flagellar assembly protein FliH compare
BPHYT_RS18875 -5.7 -4.4 flagellar basal body rod protein FlgF compare
BPHYT_RS18790 -5.6 -10.0 ATP synthase compare
BPHYT_RS18870 -5.6 -6.6 flagellar basal body rod protein FlgG compare
BPHYT_RS18855 -5.5 -8.1 flagellar rod assembly protein FlgJ compare
BPHYT_RS18880 -5.5 -13.9 flagellar hook protein FlgE compare
BPHYT_RS18885 -5.4 -4.2 flagellar basal body rod modification protein FlgD compare
BPHYT_RS15710 -5.4 -2.5 ATP-dependent Clp protease ATP-binding protein compare
BPHYT_RS18830 -5.3 -9.5 flagellar biosynthesis protein FliQ compare
BPHYT_RS19130 -5.2 -3.9 acetyltransferase compare
BPHYT_RS19010 -5.2 -6.9 flagellar motor protein MotB conserved
BPHYT_RS14855 -5.2 -2.3 ADP-L-glycero-D-manno-heptose-6-epimerase compare
BPHYT_RS18925 -4.9 -6.2 RNA polymerase sigma70 compare
BPHYT_RS18845 -4.8 -13.5 flagellar hook-associated protein FlgK conserved
BPHYT_RS18900 -4.8 -12.2 flagella basal body P-ring formation protein FlgA compare
BPHYT_RS01790 -4.8 -11.5 LuxR family transcriptional regulator compare
BPHYT_RS08850 -4.8 -2.5 transcriptional regulator compare
BPHYT_RS18940 -4.7 -10.2 flagellar biosynthesis protein FlhA compare
BPHYT_RS18890 -4.7 -5.9 flagellar basal body rod protein FlgC compare
BPHYT_RS18910 -4.6 -2.1 FlgN compare
BPHYT_RS04290 -4.5 -2.4 glycosyl transferase family 2 compare
BPHYT_RS01625 -4.5 -4.2 chemotaxis protein CheY compare
BPHYT_RS16175 -4.5 -2.6 hemolysin D compare
BPHYT_RS19015 -4.3 -9.4 flagellar motor protein MotA conserved
BPHYT_RS06175 -4.3 -7.0 LPS biosynthesis compare
BPHYT_RS06190 -4.2 -3.7 heptosyltransferase compare
BPHYT_RS18895 -4.2 -5.0 flagellar basal body rod protein FlgB compare
BPHYT_RS19105 -4.2 -12.6 aminotransferase compare
BPHYT_RS19125 -4.2 -2.9 short-chain dehydrogenase compare
BPHYT_RS18970 -4.1 -10.0 chemotaxis protein compare
BPHYT_RS16215 -4.1 -6.1 sensor histidine kinase compare
BPHYT_RS18810 -4.0 -5.3 flagellar motor switch protein FliM compare
BPHYT_RS33515 -4.0 -6.7 porin compare
BPHYT_RS01485 -4.0 -1.0 histidine kinase compare
BPHYT_RS02865 -3.9 -3.8 hypothetical protein compare
BPHYT_RS09515 -3.9 -5.2 phosphoribosylformylglycinamidine synthase compare
BPHYT_RS19100 -3.9 -12.9 hypothetical protein compare
BPHYT_RS18775 -3.8 -10.6 flagellar M-ring protein FliF compare
BPHYT_RS18840 -3.8 -5.5 flagellar hook-associated protein FlgL compare
BPHYT_RS18860 -3.7 -4.9 flagellar P-ring protein FlgI compare
BPHYT_RS14400 -3.7 -2.0 anti-sigma factor compare
BPHYT_RS18780 -3.6 -3.8 flagellar motor switch protein FliG compare
BPHYT_RS18995 -3.6 -6.3 purine-binding chemotaxis protein compare
BPHYT_RS06530 -3.6 -1.2 membrane protein compare
BPHYT_RS14395 -3.5 -7.4 sugar dehydratase compare
BPHYT_RS16255 -3.5 -4.8 phosphoribosylaminoimidazole-succinocarboxamide synthase compare
BPHYT_RS19120 -3.5 -7.0 3-oxoacyl-ACP synthase compare
BPHYT_RS12465 -3.5 -3.2 inositol monophosphatase compare
BPHYT_RS19115 -3.4 -1.4 acyl carrier protein compare
BPHYT_RS01795 -3.4 -5.3 histidine kinase compare
BPHYT_RS23840 -3.3 -3.8 methyltransferase compare
BPHYT_RS09500 -3.2 -5.3 glucose-6-phosphate isomerase compare
BPHYT_RS18825 -3.2 -5.7 flagellar biosynthesis protein FliP compare
BPHYT_RS02965 -3.2 -3.6 membrane protein compare
BPHYT_RS18765 -3.2 -3.3 flagellar biosynthesis protein FliS compare
BPHYT_RS03400 -3.2 -1.2 ATP-dependent DNA helicase RecG compare
BPHYT_RS04285 -3.1 -2.2 rhamnosyltransferase compare
BPHYT_RS16840 -3.1 -2.9 transketolase compare
BPHYT_RS18935 -3.0 -4.2 flagellar biosynthesis regulator FlhF compare
BPHYT_RS19000 -3.0 -6.9 chemotaxis protein CheA compare
BPHYT_RS09315 -2.9 -1.1 chemotaxis protein CheY compare
BPHYT_RS28705 -2.9 -1.5 IclR family transcriptional regulator compare
BPHYT_RS12615 -2.9 -1.5 dihydrodipicolinate synthase compare
BPHYT_RS06685 -2.9 -2.2 NADH:ubiquinone oxidoreductase subunit M compare
BPHYT_RS11685 -2.9 -1.3 phasin family protein compare
BPHYT_RS16710 -2.8 -1.4 LysR family transcriptional regulator compare
BPHYT_RS03655 -2.8 -1.4 membrane protein compare
BPHYT_RS18835 -2.7 -1.0 flagellar biosynthesis protein FliR compare
BPHYT_RS16270 -2.7 -3.1 phosphoglycerate kinase compare
BPHYT_RS15075 -2.7 -2.1 dihydrokaempferol 4-reductase compare
BPHYT_RS19025 -2.6 -3.5 transcriptional regulator compare
BPHYT_RS16675 -2.6 -2.4 dihydroorotase compare
BPHYT_RS18965 -2.5 -1.6 chemotaxis protein CheY compare
BPHYT_RS33535 -2.5 -15.3 RNA polymerase sigma factor RpoD compare
BPHYT_RS02525 -2.5 -9.7 membrane protein compare
BPHYT_RS06350 -2.5 -2.2 chemotaxis protein CheY compare
BPHYT_RS12510 -2.5 -2.8 RNA-binding protein compare
BPHYT_RS04455 -2.5 -1.2 glycosyl transferase compare
BPHYT_RS18805 -2.5 -2.7 flagellar basal body protein FliL compare
BPHYT_RS33850 -2.4 -1.5 sporulation protein compare
BPHYT_RS17520 -2.4 -4.8 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase compare
BPHYT_RS03640 -2.4 -3.4 phosphoribosylformylglycinamidine cyclo-ligase compare
BPHYT_RS02130 -2.4 -2.9 hydroxymethylglutaryl-CoA lyase compare
BPHYT_RS08765 -2.4 -1.0 ABC transporter ATP-binding protein compare
BPHYT_RS18980 -2.3 -4.8 chemotaxis protein CheR compare
BPHYT_RS20155 -2.3 -1.4 hypothetical protein compare
BPHYT_RS14250 -2.2 -7.5 glycosyl transferase compare
BPHYT_RS16345 -2.2 -5.4 succinyl-CoA ligase [ADP-forming] subunit beta compare
BPHYT_RS35835 -2.2 -4.7 hypothetical protein compare
BPHYT_RS07080 -2.2 -1.5 glutathione S-transferase compare
BPHYT_RS33890 -2.2 -7.9 fimbrial protein FimV compare
BPHYT_RS02285 -2.1 -5.0 cell division protein compare
BPHYT_RS03645 -2.1 -2.2 tRNA dimethylallyltransferase compare
BPHYT_RS04385 -2.1 -3.4 nucleoside-diphosphate sugar oxidoreductase compare
BPHYT_RS04095 -2.1 -1.3 SAM-dependent methyltransferase PhcB compare
BPHYT_RS05565 -2.1 -2.1 membrane protein compare
BPHYT_RS06375 -2.1 -6.2 ribonuclease compare
BPHYT_RS20235 -2.0 -4.8 iron ABC transporter compare
BPHYT_RS02590 -2.0 -6.1 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase compare
BPHYT_RS18990 -2.0 -3.1 chemotaxis protein compare
BPHYT_RS20245 -2.0 -5.2 iron ABC transporter substrate-binding protein compare
BPHYT_RS23570 -2.0 -5.0 chemotaxis protein CheY compare
BPHYT_RS04335 -2.0 -1.8 membrane protein compare
BPHYT_RS17035 -2.0 -3.3 sugar kinase compare
BPHYT_RS13245 -2.0 -4.7 hypothetical protein compare
BPHYT_RS34780 -2.0 -2.8 phytoene synthase compare
BPHYT_RS01950 -1.9 -3.9 phosphoheptose isomerase compare
BPHYT_RS06195 -1.9 -1.4 membrane protein compare
BPHYT_RS02135 -1.9 -2.5 glyoxylate reductase compare
BPHYT_RS23230 -1.9 -1.0 histidine kinase compare
BPHYT_RS01955 -1.9 -3.1 hypothetical protein compare
BPHYT_RS04370 -1.9 -1.6 glycosyl transferase compare
BPHYT_RS14370 -1.9 -2.7 ribonuclease III compare
BPHYT_RS33370 -1.9 -1.7 LysR family transcriptional regulator compare
BPHYT_RS34810 -1.9 -2.8 RND transporter compare
BPHYT_RS14255 -1.8 -9.8 ABC transporter compare
BPHYT_RS19110 -1.8 -4.0 3-oxoacyl-ACP synthase compare
BPHYT_RS10650 -1.8 -1.2 membrane protein compare
BPHYT_RS16835 -1.8 -4.5 glyceraldehyde-3-phosphate dehydrogenase compare
BPHYT_RS02415 -1.8 -5.9 cytochrome C550 compare
BPHYT_RS25955 -1.8 -2.1 transcriptional regulator compare
BPHYT_RS16245 -1.8 -5.6 phosphoribosylaminoimidazole carboxylase compare
BPHYT_RS22360 -1.8 -2.7 response regulator receiver compare
BPHYT_RS05615 -1.7 -1.6 hypothetical protein compare
BPHYT_RS31950 -1.7 -2.1 short-chain dehydrogenase compare
BPHYT_RS24565 -1.7 -4.1 membrane protein compare
BPHYT_RS16210 -1.7 -3.3 peptidase compare
BPHYT_RS35205 -1.7 -2.3 hypothetical protein compare
BPHYT_RS18660 -1.7 -2.5 hypothetical protein compare
BPHYT_RS19305 -1.7 -5.6 ATP-dependent DNA helicase Rep compare
BPHYT_RS06325 -1.7 -3.4 ATPase compare
BPHYT_RS33920 -1.7 -6.1 type II citrate synthase compare
BPHYT_RS22295 -1.7 -1.1 LysR family transcriptional regulator compare
BPHYT_RS10065 -1.7 -1.4 cytochrome C oxidase subunit I compare
BPHYT_RS17830 -1.7 -3.5 histidine kinase compare
BPHYT_RS20880 -1.6 -0.8 polyketide cyclase compare
BPHYT_RS26310 -1.6 -1.7 ribonuclease R compare
BPHYT_RS06535 -1.6 -1.9 membrane protein compare
BPHYT_RS16340 -1.6 -4.4 succinyl-CoA synthetase subunit alpha compare
BPHYT_RS11535 -1.6 -1.9 membrane protein compare
BPHYT_RS12925 -1.6 -1.0 exodeoxyribonuclease III compare
BPHYT_RS01435 -1.6 -11.0 LysR family transcriptional regulator compare
BPHYT_RS18610 -1.6 -4.9 lytic transglycosylase compare
BPHYT_RS18985 -1.6 -1.8 hypothetical protein compare
BPHYT_RS26685 -1.6 -1.1 precorrin-8X methylmutase compare
BPHYT_RS02760 -1.5 -2.3 cytochrome BD oxidase subunit II compare
BPHYT_RS17885 -1.5 -4.9 3-dehydroquinate synthase compare
BPHYT_RS09620 -1.5 -1.6 aminodeoxychorismate lyase compare
BPHYT_RS17530 -1.5 -4.5 3-octaprenyl-4-hydroxybenzoate carboxy-lyase compare
BPHYT_RS33615 -1.5 -2.5 decarboxylase compare
BPHYT_RS22940 -1.5 -1.1 pilus assembly protein TadE compare
BPHYT_RS03725 -1.5 -1.4 serine hydroxymethyltransferase compare
BPHYT_RS36000 -1.5 -2.0 hypothetical protein compare
BPHYT_RS29800 -1.5 -1.6 hypothetical protein compare
BPHYT_RS17890 -1.5 -1.4 shikimate kinase compare
BPHYT_RS13835 -1.5 -0.9 S-adenosylhomocysteine nucleosidase compare
BPHYT_RS01620 -1.5 -5.2 sensor histidine kinase compare
BPHYT_RS10095 -1.5 -1.3 integrase compare
BPHYT_RS09480 -1.5 -0.9 peptidyl-prolyl cis-trans isomerase compare
BPHYT_RS29920 -1.5 -0.9 hypothetical protein compare
BPHYT_RS25005 -1.5 -0.9 FMN reductase compare
BPHYT_RS36365 -1.5 -2.0 hypothetical protein compare
BPHYT_RS31060 -1.5 -1.2 capsular polysaccharide biosynthesis protein compare
BPHYT_RS34430 -1.5 -0.7 2-keto-4-pentenoate hydratase compare
BPHYT_RS01455 -1.5 -0.7 peptide deformylase compare
BPHYT_RS24500 -1.5 -1.4 histidine kinase compare
BPHYT_RS08565 -1.5 -1.2 dihydroorotate dehydrogenase compare
BPHYT_RS21385 -1.5 -1.6 short-chain dehydrogenase compare
BPHYT_RS12590 -1.4 -1.4 dual-specificity RNA methyltransferase RlmN compare
BPHYT_RS31415 -1.4 -1.7 amino acid ABC transporter permease compare
BPHYT_RS15020 -1.4 -5.8 tetratricopeptide repeat protein compare
BPHYT_RS21905 -1.4 -0.9 IclR family transcriptional regulator compare
BPHYT_RS33655 -1.4 -2.8 MarR family transcriptional regulator compare
BPHYT_RS30340 -1.4 -1.5 AraC family transcriptional regulator compare
BPHYT_RS09690 -1.4 -1.1 phosphate starvation-inducible protein PsiF compare
BPHYT_RS11745 -1.4 -1.0 (2Fe-2S)-binding protein compare
BPHYT_RS02155 -1.4 -4.0 dithiobiotin synthetase compare
BPHYT_RS03240 -1.4 -2.8 formate dehydrogenase accessory protein FdhD compare
BPHYT_RS24665 -1.4 -1.1 ABC transporter permease compare
BPHYT_RS03090 -1.4 -1.1 hypothetical protein compare
BPHYT_RS20220 -1.4 -1.2 antibiotic synthesis protein MbtH compare
BPHYT_RS11405 -1.4 -2.5 hypothetical protein compare
BPHYT_RS01425 -1.4 -3.7 3-phosphoglycerate dehydrogenase compare
BPHYT_RS12535 -1.4 -1.0 membrane protein compare
BPHYT_RS21340 -1.4 -4.0 2OG-Fe(II) oxygenase compare
BPHYT_RS11480 -1.4 -3.3 heme ABC transporter ATP-binding protein compare
BPHYT_RS30795 -1.4 -1.2 short-chain dehydrogenase compare
BPHYT_RS28485 -1.4 -1.1 GntR family transcriptional regulator compare
BPHYT_RS05320 -1.4 -1.3 beta-lactamase compare
BPHYT_RS19565 -1.3 -5.2 gamma-glutamyl:cysteine ligase compare
BPHYT_RS08960 -1.3 -1.1 threonine synthase compare
BPHYT_RS18930 -1.3 -2.5 flagellar biosynthesis protein FlhG compare
BPHYT_RS30750 -1.3 -1.5 GntR family transcriptional regulator compare
BPHYT_RS33135 -1.3 -1.5 LysR family transcriptional regulator compare


Specific Phenotypes

For 8 genes in this experiment

For motility Agar in Burkholderia phytofirmans PsJN

For motility Agar across organisms