Experiment set2IT089 for Burkholderia phytofirmans PsJN

Compare to:

outer cut, LB soft agar motility assay

200 most detrimental genes:

  gene name fitness t score description  
BPHYT_RS13645 +2.6 19.0 threonine--tRNA ligase compare
BPHYT_RS12550 +2.4 3.5 GTP-binding protein HflX compare
BPHYT_RS14140 +2.1 3.9 phosphate transporter permease subunit PstC compare
BPHYT_RS15305 +2.1 6.5 guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase compare
BPHYT_RS16335 +2.1 2.6 membrane protein compare
BPHYT_RS33035 +2.0 5.6 murein transglycosylase compare
BPHYT_RS22820 +2.0 3.3 hydrolase compare
BPHYT_RS11125 +2.0 3.5 alkylhydroperoxidase compare
BPHYT_RS17825 +2.0 1.5 transcriptional regulator compare
BPHYT_RS26550 +1.9 2.2 Fis family transcriptional regulator compare
BPHYT_RS30420 +1.9 1.4 transcriptional regulator compare
BPHYT_RS02880 +1.9 2.0 ATP-dependent protease compare
BPHYT_RS35735 +1.9 3.0 nitroreductase compare
BPHYT_RS25470 +1.8 2.4 alkylhydroperoxidase compare
BPHYT_RS10475 +1.7 2.5 mammalian cell entry protein compare
BPHYT_RS07935 +1.6 2.9 Rrf2 family transcriptional regulator compare
BPHYT_RS36585 +1.6 4.9 hypothetical protein compare
BPHYT_RS33805 +1.6 2.1 hypothetical protein compare
BPHYT_RS02010 +1.6 1.5 copper homeostasis protein CutC compare
BPHYT_RS08415 +1.6 1.5 hypothetical protein compare
BPHYT_RS05085 +1.5 2.3 LysR family transcriptional regulator compare
BPHYT_RS27485 +1.5 4.7 NAD-dependent dehydratase compare
BPHYT_RS25075 +1.5 2.0 AraC family transcriptional regulator compare
BPHYT_RS30810 +1.5 2.7 transcriptional regulator compare
BPHYT_RS15325 +1.5 2.6 ribonuclease PH compare
BPHYT_RS14740 +1.5 8.1 threonine-phosphate decarboxylase compare
BPHYT_RS22835 +1.4 1.8 flagellar motor protein MotA compare
BPHYT_RS27895 +1.4 2.1 enoyl-CoA hydratase compare
BPHYT_RS19260 +1.4 1.6 hypothetical protein compare
BPHYT_RS16195 +1.4 2.6 carbon monoxide dehydrogenase subunit G compare
BPHYT_RS16065 +1.4 1.1 LacI family transcriptional regulator compare
BPHYT_RS06985 +1.4 3.7 fumarate hydratase compare
BPHYT_RS08880 +1.3 2.1 phosphate transport regulator compare
BPHYT_RS27345 +1.3 2.5 aldehyde dehydrogenase compare
BPHYT_RS29620 +1.3 1.3 hypothetical protein compare
BPHYT_RS10165 +1.3 1.8 transcriptional regulator compare
BPHYT_RS17725 +1.3 3.3 BolA family transcriptional regulator compare
BPHYT_RS32210 +1.3 0.6 hypothetical protein compare
BPHYT_RS14245 +1.3 1.4 membrane protein compare
BPHYT_RS30020 +1.3 2.7 arsenic transporter compare
BPHYT_RS00790 +1.3 1.5 conjugal transfer protein TraF compare
BPHYT_RS02100 +1.3 1.8 AsnC family transcriptional regulator compare
BPHYT_RS23210 +1.2 2.0 MFS transporter compare
BPHYT_RS36400 +1.2 1.9 hypothetical protein compare
BPHYT_RS21075 +1.2 1.4 (2Fe-2S)-binding protein compare
BPHYT_RS20890 +1.2 2.1 transglycosylase compare
BPHYT_RS25885 +1.2 2.7 type III secretion protein compare
BPHYT_RS00400 +1.2 3.2 hypothetical protein compare
BPHYT_RS09980 +1.2 1.6 TetR family transcriptional regulator compare
BPHYT_RS17675 +1.2 3.1 phosphoribosyl-AMP cyclohydrolase compare
BPHYT_RS28075 +1.2 1.3 cytochrome B561 compare
BPHYT_RS18420 +1.2 2.0 hypothetical protein compare
BPHYT_RS16475 +1.2 0.9 hypothetical protein compare
BPHYT_RS32155 +1.2 3.3 type IV secretion system protein VirB11 compare
BPHYT_RS27705 +1.2 4.0 universal stress protein A compare
BPHYT_RS10925 +1.2 1.2 aldehyde dehydrogenase compare
BPHYT_RS19890 +1.1 1.5 hypothetical protein compare
BPHYT_RS28850 +1.1 1.5 hypothetical protein compare
BPHYT_RS36555 +1.1 4.6 hypothetical protein compare
BPHYT_RS01165 +1.1 2.4 hypothetical protein compare
BPHYT_RS23205 +1.1 3.0 alkylhydroperoxidase compare
BPHYT_RS35165 +1.1 1.2 peptidase compare
BPHYT_RS00750 +1.1 2.4 SpoVT/AbrB domain-containing protein compare
BPHYT_RS14135 +1.1 4.8 phosphate transporter permease subunit PtsA compare
BPHYT_RS11755 +1.1 1.1 spermidine/putrescine ABC transporter substrate-binding protein compare
BPHYT_RS29820 +1.1 1.8 hypothetical protein compare
BPHYT_RS27250 +1.1 2.1 NAD-dependent epimerase/dehydratase compare
BPHYT_RS04875 +1.1 2.1 alpha-ribazole phosphatase compare
BPHYT_RS10100 +1.1 1.6 dihydroxy-acid dehydratase compare
BPHYT_RS21455 +1.1 1.1 type 11 methyltransferase compare
BPHYT_RS07200 +1.1 2.7 AraC family transcriptional regulator compare
BPHYT_RS02390 +1.1 1.1 ABC transporter substrate-binding protein compare
BPHYT_RS17545 +1.1 3.7 cold-shock protein compare
BPHYT_RS06435 +1.1 1.5 hypothetical protein compare
BPHYT_RS10600 +1.1 2.4 LysR family transcriptional regulator compare
BPHYT_RS25340 +1.1 2.4 sulfatase compare
BPHYT_RS11265 +1.1 1.7 hypothetical protein compare
BPHYT_RS10305 +1.0 1.7 hypothetical protein compare
BPHYT_RS35625 +1.0 2.2 ser/threonine protein phosphatase compare
BPHYT_RS15775 +1.0 1.5 peptide ABC transporter permease compare
BPHYT_RS13275 +1.0 2.0 methyltransferase compare
BPHYT_RS02595 +1.0 0.9 sulfurtransferase compare
BPHYT_RS33990 +1.0 0.9 ATPase compare
BPHYT_RS34025 +1.0 2.2 hypothetical protein compare
BPHYT_RS07085 +1.0 1.8 LysR family transcriptional regulator compare
BPHYT_RS31510 +1.0 1.6 sulfonate ABC transporter substrate-binding protein compare
BPHYT_RS28200 +1.0 1.7 sugar ABC transporter substrate-binding protein compare
BPHYT_RS02710 +1.0 1.1 hypothetical protein compare
BPHYT_RS30910 +1.0 1.6 histidine kinase compare
BPHYT_RS21235 +1.0 2.0 hypothetical protein compare
BPHYT_RS02650 +1.0 1.5 membrane protein compare
BPHYT_RS22470 +1.0 1.2 hydrolase compare
BPHYT_RS10120 +1.0 0.9 membrane protein compare
BPHYT_RS33555 +1.0 2.3 30S ribosomal protein S21 compare
BPHYT_RS33400 +1.0 1.2 magnesium transporter CorA compare
BPHYT_RS30760 +1.0 1.2 MmgE/PrpD family protein compare
BPHYT_RS19985 +0.9 1.0 CoA-transferase compare
BPHYT_RS30140 +0.9 1.2 3-methylitaconate isomerase compare
BPHYT_RS28830 +0.9 0.8 LysR family transcriptional regulator compare
BPHYT_RS31675 +0.9 1.9 hypothetical protein compare
BPHYT_RS22880 +0.9 1.3 hypothetical protein compare
BPHYT_RS28255 +0.9 1.4 hypothetical protein compare
BPHYT_RS12150 +0.9 5.9 PII uridylyl-transferase compare
BPHYT_RS24050 +0.9 1.4 amino acid ABC transporter compare
BPHYT_RS21035 +0.9 2.1 ABC transporter permease compare
BPHYT_RS33820 +0.9 5.0 histidine kinase compare
BPHYT_RS21470 +0.9 1.8 6-hydroxynicotinate reductase compare
BPHYT_RS07425 +0.9 1.9 hypothetical protein compare
BPHYT_RS33045 +0.9 1.6 response regulator receiver protein compare
BPHYT_RS31590 +0.9 1.8 hypothetical protein compare
BPHYT_RS01280 +0.9 1.7 hypothetical protein compare
BPHYT_RS23615 +0.9 2.1 XRE family transcriptional regulator compare
BPHYT_RS33810 +0.9 1.2 membrane protein compare
BPHYT_RS05650 +0.9 1.1 hypothetical protein compare
BPHYT_RS21180 +0.9 2.7 hypothetical protein compare
BPHYT_RS01505 +0.9 1.3 7-cyano-7-deazaguanine reductase compare
BPHYT_RS26570 +0.9 0.9 5'-nucleotidase compare
BPHYT_RS03925 +0.9 2.3 LysR family transcriptional regulator compare
BPHYT_RS30410 +0.9 2.3 chloroperoxidase compare
BPHYT_RS00690 +0.9 0.9 transcriptional regulator compare
BPHYT_RS29330 +0.9 1.5 acetyltransferase compare
BPHYT_RS21025 +0.9 1.0 cation-binding protein compare
BPHYT_RS32435 +0.9 2.0 formate dehydrogenase-N subunit beta compare
BPHYT_RS14845 +0.9 1.6 cysteine synthase compare
BPHYT_RS07375 +0.9 2.5 membrane protein compare
BPHYT_RS34075 +0.9 2.8 chemotaxis protein CheY compare
BPHYT_RS17405 +0.9 0.9 indole-3-glycerol phosphate synthase compare
BPHYT_RS22230 +0.9 2.1 LuxR family transcriptional regulator compare
BPHYT_RS29815 +0.9 1.2 UDP-N-acetyl-D-mannosamine transferase compare
BPHYT_RS03520 +0.9 1.7 ATP--cobalamin adenosyltransferase compare
BPHYT_RS35615 +0.9 1.8 hypothetical protein compare
BPHYT_RS32860 +0.9 0.9 hypothetical protein compare
BPHYT_RS27570 +0.9 1.4 universal stress protein UspA compare
BPHYT_RS25395 +0.9 1.4 3-oxoacyl-ACP reductase compare
BPHYT_RS24690 +0.9 3.6 ionic transporter y4hA compare
BPHYT_RS10215 +0.9 1.2 sulfate transporter compare
BPHYT_RS27960 +0.9 1.8 ABC transporter ATP-binding protein compare
BPHYT_RS26290 +0.8 2.0 photosystem reaction center subunit H compare
BPHYT_RS01010 +0.8 2.1 hypothetical protein compare
BPHYT_RS04710 +0.8 2.3 hypothetical protein compare
BPHYT_RS11050 +0.8 1.2 molecular chaperone compare
BPHYT_RS30415 +0.8 1.5 AraC family transcriptional regulator compare
BPHYT_RS23885 +0.8 2.5 ABC transporter permease compare
BPHYT_RS30870 +0.8 0.9 chromate transporter compare
BPHYT_RS08615 +0.8 1.0 hypothetical protein compare
BPHYT_RS21935 +0.8 1.8 MarR family transcriptional regulator compare
BPHYT_RS10690 +0.8 1.2 Rieske (2Fe-2S) protein compare
BPHYT_RS18750 +0.8 2.4 flagellar biosynthetic protein FlhB compare
BPHYT_RS24045 +0.8 2.2 amino acid ABC transporter compare
BPHYT_RS23895 +0.8 1.8 hypothetical protein compare
BPHYT_RS07330 +0.8 2.1 5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase compare
BPHYT_RS06250 +0.8 2.5 pilus assembly protein PapD compare
BPHYT_RS04890 +0.8 1.1 cobalamin biosynthesis protein CobD compare
BPHYT_RS05880 +0.8 1.6 hypothetical protein compare
BPHYT_RS22065 +0.8 2.5 DNA-binding protein compare
BPHYT_RS21330 +0.8 0.9 hypothetical protein compare
BPHYT_RS20090 +0.8 2.5 nitrate ABC transporter substrate-binding protein compare
BPHYT_RS33015 +0.8 1.9 hypothetical protein compare
BPHYT_RS08400 +0.8 0.9 hypothetical protein compare
BPHYT_RS10505 +0.8 3.4 2-oxoglutarate dehydrogenase E1 compare
BPHYT_RS06730 +0.8 1.6 MaoC family dehydratase compare
BPHYT_RS28680 +0.8 1.9 porin compare
BPHYT_RS22130 +0.8 3.4 FAD-linked oxidase compare
BPHYT_RS12705 +0.8 1.7 DNAase compare
BPHYT_RS08405 +0.8 1.1 hypothetical protein compare
BPHYT_RS21700 +0.8 1.5 phosphotransacetylase compare
BPHYT_RS14630 +0.8 2.9 MFS transporter compare
BPHYT_RS07960 +0.8 1.3 hypothetical protein compare
BPHYT_RS20965 +0.8 2.6 photosystem reaction center subunit H compare
BPHYT_RS10350 +0.8 2.6 hypothetical protein compare
BPHYT_RS36150 +0.8 1.9 hypothetical protein compare
BPHYT_RS35580 +0.8 1.2 hypothetical protein compare
BPHYT_RS15320 +0.8 1.6 hypothetical protein compare
BPHYT_RS25625 +0.8 1.4 glutathione S-transferase compare
BPHYT_RS10245 +0.8 2.3 import inner membrane translocase subunit Tim44 compare
BPHYT_RS30075 +0.8 2.5 NADPH:quinone oxidoreductase compare
BPHYT_RS34665 +0.8 1.7 hypothetical protein compare
BPHYT_RS31065 +0.8 1.6 polysaccharide biosynthesis protein compare
BPHYT_RS30205 +0.8 1.7 dehalogenase compare
BPHYT_RS24305 +0.8 2.1 glutathione S-transferase compare
BPHYT_RS15480 +0.8 3.7 hypothetical protein compare
BPHYT_RS25575 +0.8 0.8 alpha/beta hydrolase compare
BPHYT_RS29235 +0.8 0.9 cell shape determination protein CcmA compare
BPHYT_RS07220 +0.8 1.4 GCN5 family acetyltransferase compare
BPHYT_RS18655 +0.8 1.9 3-oxoacyl-ACP synthase compare
BPHYT_RS35750 +0.8 1.0 hypothetical protein compare
BPHYT_RS14195 +0.8 1.0 carbamoyl phosphate synthase small subunit compare
BPHYT_RS22370 +0.8 2.2 alpha/beta hydrolase compare
BPHYT_RS07390 +0.8 1.2 transmembrane protein compare
BPHYT_RS22815 +0.8 1.1 TonB-denpendent receptor compare
BPHYT_RS23610 +0.7 1.2 alpha/beta hydrolase compare
BPHYT_RS22455 +0.7 0.8 phosphonate ABC transporter substrate-binding protein compare
BPHYT_RS10500 +0.7 1.0 acetolactate synthase compare
BPHYT_RS30655 +0.7 1.7 O-methyltransferase compare
BPHYT_RS17765 +0.7 2.8 toluene ABC transporter ATP-binding protein compare
BPHYT_RS28135 +0.7 1.9 alcohol dehydrogenase compare
BPHYT_RS31720 +0.7 2.6 LysR family transcriptional regulator compare
BPHYT_RS09245 +0.7 1.4 ABC transporter ATP-binding protein compare
BPHYT_RS15465 +0.7 2.7 tRNA-Gly compare
BPHYT_RS07585 +0.7 2.4 N-formylglutamate deformylase (EC 3.5.1.68) (from data) compare


Specific Phenotypes

For 8 genes in this experiment

For motility Agar in Burkholderia phytofirmans PsJN

For motility Agar across organisms