Experiment set2IT088 for Rahnella sp. WP5

Compare to:

Sodium D,L-Lactate carbon source

200 most important genes:

  gene name fitness t score description  
EX31_RS09045 -5.2 -3.6 DUF485 domain-containing protein compare
EX31_RS14185 -5.0 -6.0 acetylglutamate kinase compare
EX31_RS14200 -4.9 -14.2 phosphoenolpyruvate carboxylase compare
EX31_RS03940 -4.9 -7.5 homoserine kinase compare
EX31_RS14180 -4.9 -13.4 argininosuccinate lyase compare
EX31_RS15005 -4.7 -16.3 dihydroxy-acid dehydratase compare
EX31_RS15020 -4.7 -17.2 ketol-acid reductoisomerase compare
EX31_RS12510 -4.6 -15.6 FAD-dependent oxidoreductase compare
EX31_RS03685 -4.5 -13.3 3-isopropylmalate dehydrogenase compare
EX31_RS14190 -4.5 -12.7 N-acetyl-gamma-glutamyl-phosphate reductase compare
EX31_RS03830 -4.5 -16.6 carbamoyl-phosphate synthase large subunit compare
EX31_RS12515 -4.5 -24.5 glutamate synthase large subunit compare
EX31_RS03835 -4.3 -5.9 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit compare
EX31_RS14215 -4.3 -19.4 cystathionine gamma-synthase compare
EX31_RS16860 -4.3 -18.5 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
EX31_RS20980 -4.3 -7.7 glutamate 5-kinase compare
EX31_RS03935 -4.3 -12.5 threonine synthase compare
EX31_RS04035 -4.3 -13.1 phosphoserine phosphatase compare
EX31_RS03695 -4.2 -5.5 3-isopropylmalate dehydratase small subunit compare
EX31_RS08670 -4.1 -10.6 class 1 fructose-bisphosphatase compare
EX31_RS20975 -4.1 -7.3 glutamate-5-semialdehyde dehydrogenase compare
EX31_RS09980 -4.1 -4.8 tryptophan synthase subunit alpha compare
EX31_RS11465 -4.1 -6.7 imidazole glycerol phosphate synthase subunit HisF compare
EX31_RS03690 -4.0 -12.9 3-isopropylmalate dehydratase large subunit compare
EX31_RS22750 -4.0 -2.8 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
EX31_RS13445 -4.0 -15.8 argininosuccinate synthase compare
EX31_RS00635 -4.0 -2.7 hypothetical protein compare
EX31_RS14205 -4.0 -13.2 methylenetetrahydrofolate reductase compare
EX31_RS23415 -4.0 -7.6 citrate synthase compare
EX31_RS02690 -4.0 -5.4 pyrroline-5-carboxylate reductase compare
EX31_RS03030 -3.9 -10.6 helix-turn-helix transcriptional regulator compare
EX31_RS09975 -3.8 -5.8 tryptophan synthase subunit beta compare
EX31_RS09855 -3.8 -5.1 orotidine-5'-phosphate decarboxylase compare
EX31_RS21895 -3.8 -18.0 phosphoribosylformylglycinamidine synthase compare
EX31_RS22695 -3.8 -9.7 phosphoribosylformylglycinamidine cyclo-ligase compare
EX31_RS11460 -3.8 -2.6 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
EX31_RS23245 -3.8 -17.9 asparagine synthase B compare
EX31_RS14500 -3.8 -12.4 orotate phosphoribosyltransferase compare
EX31_RS22625 -3.8 -2.6 5-(carboxyamino)imidazole ribonucleotide mutase compare
EX31_RS13160 -3.7 -13.6 amino-acid N-acetyltransferase compare
EX31_RS03655 -3.7 -9.2 catabolite repressor/activator compare
EX31_RS16855 -3.7 -15.7 phosphoribosylamine--glycine ligase compare
EX31_RS09580 -3.7 -2.5 flagellar motor switch protein FliN compare
EX31_RS03250 -3.7 -9.8 RNA polymerase-binding protein DksA compare
EX31_RS12785 -3.7 -12.6 aspartate carbamoyltransferase compare
EX31_RS11735 -3.6 -8.7 homoserine O-succinyltransferase compare
EX31_RS13275 -3.5 -12.3 diaminopimelate decarboxylase compare
EX31_RS13935 -3.5 -11.3 phosphoenolpyruvate synthase conserved
EX31_RS08645 -3.5 -13.3 malate dehydrogenase compare
EX31_RS19570 -3.4 -13.7 amidophosphoribosyltransferase compare
EX31_RS21470 -3.4 -11.2 phosphoglycerate dehydrogenase compare
EX31_RS11455 -3.3 -5.0 imidazole glycerol phosphate synthase subunit HisH compare
EX31_RS11470 -3.3 -3.9 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
EX31_RS18095 -3.3 -6.7 quinone-dependent dihydroorotate dehydrogenase compare
EX31_RS24385 -3.3 -3.9 dihydroorotase compare
EX31_RS13495 -3.3 -5.9 FAD assembly factor SdhE compare
EX31_RS23425 -3.3 -7.2 succinate dehydrogenase membrane anchor subunit compare
EX31_RS03035 -3.3 -8.9 LysE family transporter compare
EX31_RS12825 -3.3 -9.2 ornithine carbamoyltransferase compare
EX31_RS22245 -3.3 -2.2 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
EX31_RS11675 -3.2 -2.2 Holliday junction branch migration protein RuvA compare
EX31_RS07585 -3.2 -9.6 bifunctional chorismate mutase/prephenate dehydratase compare
EX31_RS23435 -3.2 -4.8 succinate dehydrogenase iron-sulfur subunit compare
EX31_RS02520 -3.1 -5.0 sigma-54-dependent Fis family transcriptional regulator compare
EX31_RS00640 -3.1 -5.1 FMN-dependent L-lactate dehydrogenase LldD conserved
EX31_RS02530 -3.1 -4.2 ABC transporter ATP-binding protein compare
EX31_RS24600 -3.1 -1.8 hypothetical protein compare
EX31_RS08130 -3.0 -2.1 accessory factor UbiK family protein compare
EX31_RS20190 -3.0 -2.0 PTS glucose transporter subunit IIA compare
EX31_RS23430 -2.9 -9.5 succinate dehydrogenase flavoprotein subunit compare
EX31_RS22620 -2.9 -7.8 5-(carboxyamino)imidazole ribonucleotide synthase compare
EX31_RS09970 -2.9 -9.4 bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF compare
EX31_RS07590 -2.9 -2.0 bifunctional chorismate mutase/prephenate dehydrogenase compare
EX31_RS12400 -2.9 -6.0 RNA polymerase factor sigma-54 compare
EX31_RS09040 -2.9 -16.5 acetate--CoA ligase compare
EX31_RS09955 -2.9 -8.2 anthranilate synthase component 1 compare
EX31_RS09960 -2.8 -7.1 glutamine amidotransferase compare
EX31_RS19395 -2.7 -1.9 NADH-quinone oxidoreductase subunit J compare
EX31_RS03945 -2.7 -16.7 bifunctional aspartate kinase/homoserine dehydrogenase I compare
EX31_RS09050 -2.6 -16.2 cation/acetate symporter ActP compare
EX31_RS03040 -2.6 -9.1 hypothetical protein compare
EX31_RS15010 -2.6 -10.3 threonine ammonia-lyase, biosynthetic compare
EX31_RS13240 -2.6 -7.9 HTH-type transcriptional regulator GalR compare
EX31_RS09965 -2.6 -7.5 anthranilate phosphoribosyltransferase compare
EX31_RS02515 -2.6 -4.8 PAS domain-containing protein compare
EX31_RS19390 -2.5 -3.7 NADH-quinone oxidoreductase subunit NuoK compare
EX31_RS15870 -2.5 -2.4 glutamate--ammonia ligase compare
EX31_RS23420 -2.5 -3.7 succinate dehydrogenase cytochrome b556 subunit compare
EX31_RS23440 -2.5 -1.7 2-oxoglutarate dehydrogenase E1 component compare
EX31_RS01075 -2.5 -5.3 manganese-binding transcriptional regulator MntR compare
EX31_RS00700 -2.4 -2.1 ABC transporter permease compare
EX31_RS10100 -2.4 -2.7 two-component system response regulator RssB compare
EX31_RS20450 -2.3 -6.7 IMP dehydrogenase compare
EX31_RS09895 -2.3 -2.6 type I DNA topoisomerase compare
EX31_RS19405 -2.3 -3.6 NADH-quinone oxidoreductase subunit NuoH compare
EX31_RS19400 -2.3 -3.2 NADH-quinone oxidoreductase subunit NuoI compare
EX31_RS18255 -2.3 -4.1 3-phosphoserine/phosphohydroxythreonine transaminase compare
EX31_RS22680 -2.2 -7.3 polyphosphate kinase 1 compare
EX31_RS22250 -2.2 -4.1 ATP-dependent protease ATP-binding subunit ClpX compare
EX31_RS25140 -2.2 -2.5 AlpA family transcriptional regulator compare
EX31_RS25365 -2.2 -1.5 50S ribosomal protein L31 compare
EX31_RS07415 -2.1 -2.0 bifunctional diguanylate cyclase/phosphodiesterase compare
EX31_RS10020 -2.1 -1.8 YciI family protein compare
EX31_RS03480 -2.1 -1.4 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
EX31_RS14340 -2.1 -1.9 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
EX31_RS15540 -2.1 -2.1 SDR family oxidoreductase compare
EX31_RS22690 -2.1 -8.9 phosphoribosylglycinamide formyltransferase compare
EX31_RS14335 -2.0 -3.0 serine O-acetyltransferase compare
EX31_RS04320 -2.0 -2.1 hypothetical protein compare
EX31_RS00170 -2.0 -2.3 DUF1471 domain-containing protein compare
EX31_RS22430 -1.9 -2.2 hemolysin expression modulator Hha compare
EX31_RS18540 -1.9 -2.2 cysteine/glutathione ABC transporter permease/ATP-binding protein CydD compare
EX31_RS20735 -1.9 -3.9 exodeoxyribonuclease V subunit beta compare
EX31_RS00490 -1.9 -3.4 paraquat-inducible protein A compare
EX31_RS03790 -1.9 -2.4 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) compare
EX31_RS09700 -1.9 -4.0 GlpM family protein compare
EX31_RS00380 -1.9 -3.2 ABC transporter ATP-binding protein compare
EX31_RS19430 -1.9 -4.1 NADH-quinone oxidoreductase subunit B compare
EX31_RS22205 -1.8 -8.8 cytochrome o ubiquinol oxidase subunit IV compare
EX31_RS23875 -1.8 -3.0 DUF1471 domain-containing protein compare
EX31_RS19375 -1.8 -3.1 NADH-quinone oxidoreductase subunit NuoN compare
EX31_RS09650 -1.8 -1.9 GrxA family glutaredoxin compare
EX31_RS22220 -1.8 -10.6 cytochrome o ubiquinol oxidase subunit II compare
EX31_RS09550 -1.8 -2.2 flagellar assembly protein FliH compare
EX31_RS19420 -1.8 -2.3 NADH-quinone oxidoreductase subunit NuoE compare
EX31_RS19655 -1.7 -4.5 beta-ketoacyl-ACP synthase I compare
EX31_RS14620 -1.7 -2.0 SCP2 domain-containing protein compare
EX31_RS19380 -1.7 -4.6 NADH-quinone oxidoreductase subunit M compare
EX31_RS18525 -1.7 -3.0 DNA translocase FtsK compare
EX31_RS19410 -1.7 -5.3 NADH-quinone oxidoreductase subunit NuoG compare
EX31_RS15160 -1.7 -4.9 DUF484 domain-containing protein compare
EX31_RS05335 -1.6 -8.3 transcriptional regulator EbgR compare
EX31_RS25630 -1.6 -3.8 DUF3606 domain-containing protein compare
EX31_RS09490 -1.6 -1.2 hypothetical protein compare
EX31_RS11625 -1.6 -0.9 hypothetical protein compare
EX31_RS21300 -1.6 -2.0 acyl carrier protein compare
EX31_RS24480 -1.6 -2.9 purine nucleoside phosphoramidase compare
EX31_RS18785 -1.6 -4.3 DUF2384 domain-containing protein compare
EX31_RS11445 -1.6 -6.7 histidinol-phosphate transaminase compare
EX31_RS18600 -1.6 -2.9 ubiquinone-dependent pyruvate dehydrogenase compare
EX31_RS04105 -1.5 -2.3 helix-turn-helix domain-containing protein compare
EX31_RS19425 -1.5 -4.0 NADH-quinone oxidoreductase subunit C/D compare
EX31_RS07955 -1.5 -10.9 GTP diphosphokinase compare
EX31_RS19150 -1.5 -3.3 hypothetical protein compare
EX31_RS08545 -1.5 -4.4 transcription termination/antitermination protein NusA compare
EX31_RS10135 -1.5 -2.5 ROK family transcriptional regulator compare
EX31_RS22210 -1.5 -6.4 cytochrome o ubiquinol oxidase subunit III compare
EX31_RS25405 -1.4 -2.4 DUF2767 family protein compare
EX31_RS21400 -1.4 -5.1 transketolase compare
EX31_RS11440 -1.4 -4.1 histidinol dehydrogenase compare
EX31_RS02130 -1.4 -2.8 amino acid-binding protein compare
EX31_RS15155 -1.4 -2.2 diaminopimelate epimerase compare
EX31_RS07205 -1.4 -4.1 universal stress protein UspE compare
EX31_RS09590 -1.4 -2.9 flagellar type III secretion system pore protein FliP compare
EX31_RS06550 -1.4 -2.6 two-component system response regulator NarL compare
EX31_RS13480 -1.4 -3.6 site-specific tyrosine recombinase XerD compare
EX31_RS20495 -1.4 -6.2 outer membrane protein assembly factor BamB compare
EX31_RS10375 -1.4 -2.8 hypothetical protein compare
EX31_RS02525 -1.4 -5.2 ABC transporter permease compare
EX31_RS14575 -1.4 -4.2 NAD(P)H-flavin reductase compare
EX31_RS23490 -1.4 -1.7 cell envelope integrity protein TolA compare
EX31_RS10505 -1.4 -2.7 fatty acid metabolism transcriptional regulator FadR compare
EX31_RS07160 -1.3 -2.7 HTH-type transcriptional regulator Cbl compare
EX31_RS09825 -1.3 -4.2 glycyl-radical enzyme activating protein compare
EX31_RS02390 -1.3 -1.8 steroid Delta-isomerase compare
EX31_RS02380 -1.3 -2.9 OsmC family protein compare
EX31_RS09890 -1.3 -6.8 HTH-type transcriptional regulator CysB compare
EX31_RS22200 -1.3 -7.9 protoheme IX farnesyltransferase compare
EX31_RS23825 -1.3 -5.5 D-lactate dehydrogenase compare
EX31_RS22215 -1.3 -8.8 cytochrome o ubiquinol oxidase subunit I compare
EX31_RS01090 -1.3 -3.0 metal ABC transporter permease compare
EX31_RS19415 -1.3 -2.7 NADH-quinone oxidoreductase subunit NuoF compare
EX31_RS20175 -1.2 -4.7 cysteine synthase A compare
EX31_RS06655 -1.2 -2.7 L-arabinose ABC transporter permease AraH compare
EX31_RS10260 -1.2 -1.2 hypothetical protein compare
EX31_RS17085 -1.2 -2.9 integrase compare
EX31_RS22315 -1.2 -2.4 P-II family nitrogen regulator compare
EX31_RS12215 -1.2 -3.5 type II 3-dehydroquinate dehydratase compare
EX31_RS07115 -1.2 -2.2 cysteine dioxygenase compare
EX31_RS13815 -1.2 -0.8 ribonuclease T compare
EX31_RS07440 -1.2 -1.9 urea carboxylase-associated family protein compare
EX31_RS18560 -1.2 -6.9 ATP-dependent Clp protease ATP-binding subunit ClpA compare
EX31_RS06450 -1.2 -3.9 ABC transporter substrate-binding protein compare
EX31_RS00920 -1.2 -1.7 DUF1493 family protein compare
EX31_RS01785 -1.2 -3.0 YfdQ family protein compare
EX31_RS23480 -1.2 -2.3 Tol-Pal system protein TolQ compare
EX31_RS10155 -1.2 -3.0 ROK family protein compare
EX31_RS04710 -1.2 -2.6 adenine-specific DNA-methyltransferase compare
EX31_RS07520 -1.1 -1.4 ornithine cyclodeaminase compare
EX31_RS19435 -1.1 -1.5 NADH-quinone oxidoreductase subunit A compare
EX31_RS10725 -1.1 -0.7 plasmid maintenance protein CcdB compare
EX31_RS24380 -1.1 -2.3 DNA damage-inducible protein I compare
EX31_RS10750 -1.1 -2.0 chromate transporter compare
EX31_RS19230 -1.1 -1.5 DinI family protein compare
EX31_RS20185 -1.1 -3.8 phosphoenolpyruvate-protein phosphotransferase PtsI compare
EX31_RS15670 -1.1 -2.3 phage-shock protein compare
EX31_RS22145 -1.1 -1.3 phosphatidylglycerophosphatase A compare
EX31_RS00625 -1.1 -1.1 YgdI/YgdR family lipoprotein compare
EX31_RS15660 -1.1 -3.2 TIGR01620 family protein compare
EX31_RS16290 -1.1 -3.0 Arc family DNA-binding protein compare


Specific Phenotypes

For 27 genes in this experiment

For carbon source Sodium D,L-Lactate in Rahnella sp. WP5

For carbon source Sodium D,L-Lactate across organisms