Experiment set2IT088 for Pedobacter sp. GW460-11-11-14-LB5

Compare to:

L-Phenylalanine nitrogen source

200 most detrimental genes:

  gene name fitness t score description  
CA265_RS21330 +3.9 4.6 TetR family transcriptional regulator compare
CA265_RS25215 +3.8 14.4 MBL fold hydrolase compare
CA265_RS12715 +3.8 25.7 hypothetical protein compare
CA265_RS17285 +3.7 3.0 hypothetical protein compare
CA265_RS15265 +3.7 20.8 TetR family transcriptional regulator compare
CA265_RS17145 +2.7 10.4 malate:quinone oxidoreductase compare
CA265_RS23155 +2.5 17.9 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
CA265_RS09335 +2.4 14.3 DUF4442 domain-containing protein compare
CA265_RS15785 +2.3 3.5 branched-chain-amino-acid transaminase compare
CA265_RS03740 +2.3 9.3 hypothetical protein compare
CA265_RS20350 +2.2 12.1 gliding motility lipoprotein GldH compare
CA265_RS14415 +2.1 13.3 pseudouridine synthase compare
CA265_RS09900 +2.0 4.7 TetR family transcriptional regulator compare
CA265_RS21900 +2.0 16.4 two-component sensor histidine kinase compare
CA265_RS19575 +2.0 7.2 glycoside hydrolase compare
CA265_RS19990 +1.9 2.6 YtxH domain-containing protein compare
CA265_RS12665 +1.9 4.1 cold-shock protein compare
CA265_RS15270 +1.8 3.5 hypothetical protein compare
CA265_RS09045 +1.8 13.2 ABC transporter permease compare
CA265_RS22645 +1.8 4.4 tryptophan 2,3-dioxygenase compare
CA265_RS00665 +1.8 5.2 lysine transporter LysE compare
CA265_RS18225 +1.8 10.0 DNA-binding response regulator compare
CA265_RS20375 +1.7 9.2 methyltransferase compare
CA265_RS13260 +1.6 13.3 ABC transporter compare
CA265_RS14545 +1.6 8.5 hypothetical protein compare
CA265_RS25185 +1.6 2.3 glycine dehydrogenase (aminomethyl-transferring) compare
CA265_RS15000 +1.5 10.0 amino acid permease compare
CA265_RS15580 +1.5 5.2 tRNA pseudouridine(38-40) synthase TruA compare
CA265_RS19380 +1.5 9.7 beta-carotene 15,15'-monooxygenase compare
CA265_RS15575 +1.5 11.6 antibiotic ABC transporter ATP-binding protein compare
CA265_RS09895 +1.5 4.1 aromatic compound degradation protein PaaI compare
CA265_RS19940 +1.5 11.4 hypothetical protein compare
CA265_RS16015 +1.5 8.3 ABC transporter permease compare
CA265_RS23510 +1.5 6.7 energy transducer TonB compare
CA265_RS08905 +1.4 5.7 DNA helicase RecQ compare
CA265_RS18115 +1.4 9.7 gliding motility protein GldN compare
CA265_RS23505 +1.4 4.1 biopolymer transporter ExbD compare
CA265_RS16105 +1.3 1.8 hypothetical protein compare
CA265_RS17555 +1.3 8.6 hypothetical protein compare
CA265_RS18125 +1.3 9.5 gliding motility protein GldL compare
CA265_RS08085 +1.3 8.3 aminodeoxychorismate lyase compare
CA265_RS18120 +1.3 9.6 gliding motility protein GldM compare
CA265_RS23520 +1.3 9.3 phosphate ABC transporter substrate-binding protein compare
CA265_RS19945 +1.3 5.3 hypothetical protein compare
CA265_RS23515 +1.3 5.1 hypothetical protein compare
CA265_RS19980 +1.3 4.7 hypothetical protein compare
CA265_RS04330 +1.3 2.8 transcriptional regulator compare
CA265_RS21000 +1.3 5.7 ribosome silencing factor compare
CA265_RS03260 +1.2 8.2 multidrug ABC transporter ATP-binding protein compare
CA265_RS23985 +1.2 7.1 gliding motility lipoprotein GldB compare
CA265_RS16295 +1.2 7.6 LacI family transcriptional regulator compare
CA265_RS13225 +1.2 7.5 exonuclease compare
CA265_RS03295 +1.2 8.4 gliding motility-associated ABC transporter substrate-binding protein GldG compare
CA265_RS15085 +1.2 6.6 hypothetical protein compare
CA265_RS18745 +1.2 1.7 hypothetical protein compare
CA265_RS23635 +1.2 8.9 gliding motility lipoprotein GldJ compare
CA265_RS06585 +1.2 8.2 hypothetical protein compare
CA265_RS16020 +1.2 7.5 ABC transporter ATP-binding protein compare
CA265_RS18140 +1.2 6.4 DUF4271 domain-containing protein compare
CA265_RS04275 +1.2 7.6 ATP-dependent protease ATP-binding subunit ClpX compare
CA265_RS23605 +1.2 7.7 alkaline phosphatase compare
CA265_RS06120 +1.2 5.8 UDP-glucose--hexose-1-phosphate uridylyltransferase (EC 2.7.7.12) (from data) compare
CA265_RS06250 +1.2 1.7 RNA polymerase subunit sigma-70 compare
CA265_RS19740 +1.1 5.4 gliding motility lipoprotein GldD compare
CA265_RS17575 +1.1 7.4 acyl-CoA dehydrogenase compare
CA265_RS08135 +1.1 6.3 amidohydrolase compare
CA265_RS18130 +1.1 8.3 gliding motility-associated lipoprotein compare
CA265_RS03290 +1.1 6.2 gliding motility-associated ABC transporter permease subunit GldF compare
CA265_RS08090 +1.1 4.2 serine/threonine protein kinase compare
CA265_RS21715 +1.1 7.6 hypothetical protein compare
CA265_RS23640 +1.1 7.1 hypothetical protein compare
CA265_RS21060 +1.1 3.0 hypothetical protein compare
CA265_RS15050 +1.1 3.8 lysine transporter LysE compare
CA265_RS18990 +1.1 9.6 cell surface protein SprA compare
CA265_RS21905 +1.0 5.1 hypothetical protein compare
CA265_RS25235 +1.0 5.8 hypothetical protein compare
CA265_RS17590 +1.0 7.5 3-hydroxyacyl-CoA dehydrogenase compare
CA265_RS23305 +1.0 1.6 hypothetical protein compare
CA265_RS15335 +1.0 5.8 NAD-dependent epimerase compare
CA265_RS09035 +1.0 3.5 anti-anti-sigma factor compare
CA265_RS17580 +1.0 4.8 four helix bundle protein compare
CA265_RS10475 +1.0 4.5 amidinotransferase compare
CA265_RS10935 +1.0 3.6 DUF423 domain-containing protein compare
CA265_RS23545 +1.0 1.7 NADH dehydrogenase subunit D compare
CA265_RS20980 +1.0 5.5 6-phosphofructokinase compare
CA265_RS10600 +1.0 4.2 RNA polymerase subunit sigma-24 compare
CA265_RS17455 +1.0 3.1 hypothetical protein compare
CA265_RS17585 +1.0 5.7 acetyl-CoA acetyltransferase compare
CA265_RS01320 +1.0 1.8 hypothetical protein compare
CA265_RS16715 +0.9 1.9 hypothetical protein compare
CA265_RS21745 +0.9 2.2 hypothetical protein compare
CA265_RS24720 +0.9 7.8 multidrug transporter compare
CA265_RS21565 +0.9 1.2 cold-shock protein compare
CA265_RS18090 +0.9 7.2 gliding motility protein compare
CA265_RS15145 +0.9 6.0 amino acid permease compare
CA265_RS23035 +0.9 3.6 four-helix bundle copper-binding protein compare
CA265_RS21740 +0.9 3.1 RNA polymerase sigma factor compare
CA265_RS13240 +0.9 2.6 preprotein translocase subunit YajC compare
CA265_RS19360 +0.9 3.4 peptidylprolyl isomerase compare
CA265_RS15330 +0.9 2.9 YebC/PmpR family DNA-binding transcriptional regulator compare
CA265_RS25450 +0.9 2.0 iron-sulfur cluster assembly accessory protein compare
CA265_RS13655 +0.9 4.6 hypothetical protein compare
CA265_RS01200 +0.9 4.2 hypothetical protein compare
CA265_RS00940 +0.9 2.1 hypothetical protein compare
CA265_RS00270 +0.9 2.7 hypothetical protein compare
CA265_RS18945 +0.9 5.5 LacI family transcriptional regulator compare
CA265_RS19985 +0.8 3.5 hypothetical protein compare
CA265_RS07120 +0.8 2.2 glutathione peroxidase compare
CA265_RS23485 +0.8 3.4 hypothetical protein compare
CA265_RS01220 +0.8 2.1 hypothetical protein compare
CA265_RS02965 +0.8 4.2 hypothetical protein compare
CA265_RS00490 +0.8 2.7 hypothetical protein compare
CA265_RS04375 +0.8 3.3 cystathionine beta-synthase compare
CA265_RS21975 +0.8 6.1 peptidase S41 compare
CA265_RS16325 +0.8 1.6 CsbD family protein compare
CA265_RS17560 +0.8 4.5 peptidylprolyl isomerase compare
CA265_RS16480 +0.8 4.4 hypothetical protein compare
CA265_RS18035 +0.8 2.0 hypothetical protein compare
CA265_RS17790 +0.8 2.0 caa(3)-type oxidase compare
CA265_RS18805 +0.8 1.5 hypothetical protein compare
CA265_RS01205 +0.8 3.1 import component protein compare
CA265_RS02760 +0.8 1.9 hypothetical protein compare
CA265_RS18475 +0.8 3.0 hypothetical protein compare
CA265_RS10660 +0.8 1.8 acyl dehydratase compare
CA265_RS12945 +0.8 4.7 hypothetical protein compare
CA265_RS22805 +0.8 4.8 glycosyl transferase compare
CA265_RS08080 +0.8 4.3 thioesterase compare
CA265_RS15070 +0.8 2.2 hypothetical protein compare
CA265_RS15800 +0.8 0.8 DNA-binding protein compare
CA265_RS07490 +0.8 4.1 ATP:cob(I)alamin adenosyltransferase compare
CA265_RS15010 +0.7 3.2 hypothetical protein compare
CA265_RS08180 +0.7 1.4 O-acetylhomoserine aminocarboxypropyltransferase compare
CA265_RS15570 +0.7 3.7 hypothetical protein compare
CA265_RS07595 +0.7 3.2 MerR family transcriptional regulator compare
CA265_RS11030 +0.7 1.2 twin-arginine translocase TatA/TatE family subunit compare
CA265_RS25270 +0.7 0.8 hypothetical protein compare
CA265_RS12765 +0.7 4.0 SRPBCC family protein compare
CA265_RS15115 +0.7 3.1 porin compare
CA265_RS22800 +0.7 4.2 glycosyl transferase compare
CA265_RS23525 +0.7 4.9 hypothetical protein compare
CA265_RS21125 +0.7 4.1 tRNA dihydrouridine synthase DusB compare
CA265_RS14155 +0.7 2.3 hypothetical protein compare
CA265_RS23845 +0.7 3.3 fumarate hydratase compare
CA265_RS19495 +0.7 2.9 FkbM family methyltransferase compare
CA265_RS19140 +0.7 1.7 tRNA-Ile compare
CA265_RS22630 +0.7 2.3 nucleoside-diphosphate sugar epimerase compare
CA265_RS25295 +0.7 4.3 DoxX family protein compare
CA265_RS04325 +0.7 1.0 hypothetical protein compare
CA265_RS03720 +0.7 3.1 DUF4199 domain-containing protein compare
CA265_RS13205 +0.7 4.6 zinc/iron permease compare
CA265_RS16270 +0.7 3.5 hypothetical protein compare
CA265_RS10470 +0.7 4.1 amidinotransferase compare
CA265_RS24770 +0.7 2.0 hypothetical protein compare
CA265_RS17635 +0.7 2.3 hypothetical protein compare
CA265_RS17535 +0.7 3.3 deoxyribodipyrimidine photolyase compare
CA265_RS19605 +0.7 3.2 serine hydrolase compare
CA265_RS21325 +0.7 3.2 cellulase compare
CA265_RS06375 +0.7 4.2 cystathionine gamma-synthase compare
CA265_RS01035 +0.6 3.2 hypothetical protein compare
CA265_RS21315 +0.6 2.1 hypothetical protein compare
CA265_RS17115 +0.6 2.9 arsenate reductase compare
CA265_RS16615 +0.6 1.7 hypothetical protein compare
CA265_RS13065 +0.6 2.9 DNA alkylation repair protein compare
CA265_RS03255 +0.6 4.1 glycerophosphodiester phosphodiesterase compare
CA265_RS22710 +0.6 4.1 hypothetical protein compare
CA265_RS10750 +0.6 3.5 SMC-Scp complex subunit ScpB compare
CA265_RS14110 +0.6 3.2 ATP-binding protein compare
CA265_RS23235 +0.6 1.9 transcriptional regulator compare
CA265_RS18780 +0.6 2.0 YicC family protein compare
CA265_RS08325 +0.6 3.4 haloacid dehalogenase compare
CA265_RS06910 +0.6 1.5 DUF3606 domain-containing protein compare
CA265_RS23925 +0.6 2.4 endonuclease compare
CA265_RS17295 +0.6 2.5 hypothetical protein compare
CA265_RS15880 +0.6 2.1 sugar ABC transporter ATP-binding protein compare
CA265_RS03115 +0.6 1.3 peroxiredoxin compare
CA265_RS08840 +0.6 1.9 hypothetical protein compare
CA265_RS05575 +0.6 0.7 hypothetical protein compare
CA265_RS15650 +0.6 2.5 hypothetical protein compare
CA265_RS13270 +0.6 1.7 hypothetical protein compare
CA265_RS01195 +0.6 1.8 hypothetical protein compare
CA265_RS10955 +0.6 2.9 membrane protein insertion efficiency factor YidD compare
CA265_RS25345 +0.6 1.4 hypothetical protein compare
CA265_RS18385 +0.6 4.0 peptidase compare
CA265_RS23675 +0.6 1.5 hypothetical protein compare
CA265_RS04640 +0.6 3.5 efflux transporter periplasmic adaptor subunit compare
CA265_RS08460 +0.6 3.0 arabinosidase compare
CA265_RS15280 +0.6 3.6 glycine C-acetyltransferase compare
CA265_RS24625 +0.6 3.6 LacI family transcriptional regulator compare
CA265_RS20745 +0.6 3.0 conjugative transposon protein TraK compare
CA265_RS23180 +0.6 1.7 peroxiredoxin compare
CA265_RS23615 +0.6 4.3 hemolysin compare
CA265_RS01955 +0.6 1.5 VapC toxin family PIN domain ribonuclease compare
CA265_RS19535 +0.6 3.8 hypothetical protein compare
CA265_RS06125 +0.6 3.0 galactokinase, -1-phosphate forming (EC 2.7.1.6) (from data) compare
CA265_RS09320 +0.6 0.9 hypothetical protein compare
CA265_RS18240 +0.6 2.9 hypothetical protein compare
CA265_RS20070 +0.6 2.5 NadR compare
CA265_RS11010 +0.6 2.7 hypothetical protein compare
CA265_RS16485 +0.6 1.5 peptidyl-prolyl cis-trans isomerase compare
CA265_RS04360 +0.6 3.8 hypothetical protein compare


Specific Phenotypes

For 11 genes in this experiment

For nitrogen source L-Phenylalanine in Pedobacter sp. GW460-11-11-14-LB5

For nitrogen source L-Phenylalanine across organisms