Experiment set2IT088 for Sphingomonas koreensis DSMZ 15582

Compare to:

LB with Chloramphenicol 0.0001 mg/ml

200 most important genes:

  gene name fitness t score description  
Ga0059261_0171 -3.4 -3.2 Thiol-disulfide isomerase and thioredoxins compare
Ga0059261_4186 -3.3 -3.1 Phosphopantetheine attachment site compare
Ga0059261_2707 -2.9 -6.3 fructose-1,6-bisphosphatase, class II compare
Ga0059261_4188 -2.8 -8.0 pyridoxal-dependent decarboxylase, exosortase A system-associated compare
Ga0059261_4187 -2.8 -12.0 acyl-CoA ligase (AMP-forming), exosortase A-associated compare
Ga0059261_2189 -2.5 -9.1 uncharacterized domain 1 compare
Ga0059261_0613 -2.3 -4.8 FecR family protein compare
Ga0059261_0349 -2.2 -5.2 MarR family compare
Ga0059261_2490 -2.2 -6.4 Small protein A (tmRNA-binding) compare
Ga0059261_0170 -1.9 -4.8 Uncharacterized protein involved in biosynthesis of c-type cytochromes compare
Ga0059261_3160 -1.9 -4.1 TolQ protein compare
Ga0059261_4120 -1.8 -2.3 Stress responsive A/B Barrel Domain compare
Ga0059261_1369 -1.8 -10.1 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Ga0059261_0163 -1.7 -3.7 Major Facilitator Superfamily compare
Ga0059261_1370 -1.6 -8.0 Signal transduction histidine kinase compare
Ga0059261_0175 -1.6 -7.2 heme exporter protein CcmC compare
Ga0059261_3615 -1.6 -1.8 hypothetical protein compare
Ga0059261_3227 -1.6 -1.9 GTP-binding protein YchF compare
Ga0059261_2417 -1.5 -3.5 phytoene desaturase compare
Ga0059261_3103 -1.5 -4.0 Glycosyltransferase compare
Ga0059261_0172 -1.4 -7.1 Cytochrome c biogenesis factor compare
Ga0059261_2181 -1.4 -9.5 penicillin-binding protein, 1A family compare
Ga0059261_3755 -1.4 -2.1 Protein of unknown function (DUF2798) compare
Ga0059261_1909 -1.4 -6.4 MAF protein compare
Ga0059261_2191 -1.3 -6.9 ribosomal subunit interface protein compare
Ga0059261_0369 -1.2 -2.0 ribosomal protein L9 compare
Ga0059261_3671 -1.2 -1.9 Citrate lyase beta subunit compare
Ga0059261_2286 -1.2 -5.3 Fe2+ transport system protein B compare
Ga0059261_2418 -1.2 -4.4 lycopene cyclase compare
Ga0059261_3512 -1.2 -2.3 glutamate 5-kinase (EC 2.7.2.11) (from data) compare
Ga0059261_3979 -1.1 -3.0 elongation factor 4 compare
Ga0059261_2005 -1.1 -4.4 protoheme IX farnesyltransferase compare
Ga0059261_3748 -1.1 -3.3 ribosomal protein L15, bacterial/organelle compare
Ga0059261_0242 -1.1 -2.0 hypothetical protein compare
Ga0059261_0255 -1.1 -2.6 SurA N-terminal domain/PPIC-type PPIASE domain compare
Ga0059261_2013 -1.1 -7.6 signal peptidase I, bacterial type compare
Ga0059261_0131 -1.0 -4.2 hypothetical protein compare
Ga0059261_1869 -1.0 -4.1 ABC-type transport system involved in resistance to organic solvents, periplasmic component compare
Ga0059261_0993 -0.9 -2.0 Methylase involved in ubiquinone/menaquinone biosynthesis compare
Ga0059261_1911 -0.9 -1.5 Thioredoxin-like proteins and domains compare
Ga0059261_1871 -0.9 -6.1 ABC transport permease subunit compare
Ga0059261_1696 -0.9 -3.1 Pyridine nucleotide-disulphide oxidoreductase/Reductase C-terminal compare
Ga0059261_1870 -0.9 -4.5 ABC-type transport system involved in resistance to organic solvents, ATPase component compare
Ga0059261_3114 -0.9 -5.0 hypothetical protein compare
Ga0059261_3127 -0.9 -3.7 hypothetical protein compare
Ga0059261_2179 -0.9 -5.8 Phospholipid N-methyltransferase compare
Ga0059261_2190 -0.9 -2.8 PTS IIA-like nitrogen-regulatory protein PtsN compare
Ga0059261_0013 -0.9 -2.4 hypothetical protein compare
Ga0059261_2034 -0.9 -5.7 Uncharacterized protein conserved in bacteria compare
Ga0059261_3101 -0.9 -2.6 nucleotide sugar dehydrogenase compare
Ga0059261_1507 -0.8 -2.2 deoxycytidine triphosphate deaminase compare
Ga0059261_0790 -0.8 -1.5 putative membrane protein insertion efficiency factor compare
Ga0059261_1287 -0.8 -5.2 poly(R)-hydroxyalkanoic acid synthase, class I compare
Ga0059261_3097 -0.8 -3.5 Calcineurin-like phosphoesterase compare
Ga0059261_1419 -0.8 -3.1 fructose-6-phosphate aldolase, TalC/MipB family compare
Ga0059261_0290 -0.8 -3.3 3-dehydroquinate dehydratase (EC 4.2.1.10) compare
Ga0059261_3657 -0.8 -4.1 His Kinase A (phospho-acceptor) domain/Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase compare
Ga0059261_1214 -0.8 -1.4 hypothetical protein compare
Ga0059261_3129 -0.8 -4.8 SLBB domain/Polysaccharide biosynthesis/export protein compare
Ga0059261_3128 -0.8 -5.8 capsular exopolysaccharide family compare
Ga0059261_1560 -0.8 -2.4 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain compare
Ga0059261_2730 -0.7 -1.2 Sortase and related acyltransferases compare
Ga0059261_3156 -0.7 -3.4 peptidoglycan-associated lipoprotein compare
Ga0059261_3502 -0.7 -2.0 Fatty acid desaturase compare
Ga0059261_1928 -0.7 -2.9 Predicted permeases compare
Ga0059261_0012 -0.7 -3.1 Protein of unknown function (DUF1469) compare
Ga0059261_2350 -0.7 -2.2 hypothetical protein compare
Ga0059261_3119 -0.7 -2.2 asparagine synthase (glutamine-hydrolyzing) compare
Ga0059261_2735 -0.7 -1.6 Glyoxalase-like domain compare
Ga0059261_4122 -0.7 -2.0 Gluconate 2-dehydrogenase subunit 3 compare
Ga0059261_1382 -0.7 -3.9 periplasmic serine protease, Do/DeqQ family compare
Ga0059261_2266 -0.7 -3.6 Uncharacterized protein conserved in bacteria compare
Ga0059261_2145 -0.7 -3.4 ribosome-binding factor A compare
Ga0059261_3157 -0.7 -5.6 tol-pal system beta propeller repeat protein TolB compare
Ga0059261_3124 -0.7 -2.6 imidazole glycerol phosphate synthase, glutamine amidotransferase subunit compare
Ga0059261_3130 -0.7 -3.9 Lipid A core - O-antigen ligase and related enzymes compare
Ga0059261_1563 -0.7 -1.9 cytochrome bo3 quinol oxidase subunit 4 (EC 1.10.3.-) compare
Ga0059261_0950 -0.7 -1.6 Uncharacterized protein conserved in bacteria (DUF2336) compare
Ga0059261_2700 -0.7 -5.0 Putative Zn-dependent protease, contains TPR repeats compare
Ga0059261_3347 -0.7 -2.1 Domain of unknown function DUF87 compare
Ga0059261_1312 -0.7 -2.7 amino acid/peptide transporter (Peptide:H+ symporter), bacterial compare
Ga0059261_2514 -0.7 -5.1 phosphoenolpyruvate-protein phosphotransferase compare
Ga0059261_2351 -0.6 -1.6 hypothetical protein compare
Ga0059261_0161 -0.6 -1.9 molybdopterin converting factor, subunit 1, non-archaeal compare
Ga0059261_2444 -0.6 -3.2 5-aminolevulinic acid synthase compare
Ga0059261_3208 -0.6 -1.4 hypothetical protein compare
Ga0059261_2547 -0.6 -1.1 tRNA compare
Ga0059261_1914 -0.6 -1.6 Acetyltransferases compare
Ga0059261_0626 -0.6 -2.3 Fructose-2,6-bisphosphatase compare
Ga0059261_2540 -0.6 -2.2 Uncharacterized protein conserved in bacteria compare
Ga0059261_3481 -0.6 -2.9 Beta-glucosidase-related glycosidases compare
Ga0059261_2215 -0.6 -1.7 Thiamine monophosphate synthase compare
Ga0059261_1368 -0.6 -1.4 hypothetical protein compare
Ga0059261_4055 -0.6 -3.8 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) compare
Ga0059261_3506 -0.6 -1.1 Predicted permeases compare
Ga0059261_4046 -0.6 -1.4 Response regulator receiver domain compare
Ga0059261_1868 -0.6 -1.6 ABC-type uncharacterized transport system, auxiliary component compare
Ga0059261_0321 -0.6 -1.1 hypothetical protein compare
Ga0059261_1612 -0.6 -1.0 hypothetical protein compare
Ga0059261_1929 -0.6 -2.2 Putative transmembrane protein (Alph_Pro_TM) compare
Ga0059261_0551 -0.6 -2.4 Cytochrome c2 compare
Ga0059261_1472 -0.6 -0.9 hypothetical protein compare
Ga0059261_0204 -0.6 -2.1 protein RecA compare
Ga0059261_4060 -0.5 -0.9 Predicted membrane protein compare
Ga0059261_2448 -0.5 -1.1 DNA protecting protein DprA compare
Ga0059261_3714 -0.5 -2.3 Acyl-CoA hydrolase compare
Ga0059261_1846 -0.5 -3.4 Xaa-Pro aminopeptidase compare
Ga0059261_1500 -0.5 -2.0 phosphoadenylylsulfate reductase (thioredoxin) (EC 1.8.4.8) compare
Ga0059261_2050 -0.5 -1.2 hypothetical protein compare
Ga0059261_3339 -0.5 -2.6 ATP-dependent protease HslVU, ATPase subunit compare
Ga0059261_1564 -0.5 -2.2 cytochrome bo3 quinol oxidase subunit 3 (EC 1.10.3.-) compare
Ga0059261_3186 -0.5 -3.6 Excinuclease ABC subunit C compare
Ga0059261_3276 -0.5 -3.2 ABC-type multidrug transport system, ATPase and permease components compare
Ga0059261_4212 -0.5 -2.8 TPR repeat compare
Ga0059261_0816 -0.5 -1.5 hypothetical protein compare
Ga0059261_2754 -0.5 -4.5 ABC-type branched-chain amino acid transport systems, periplasmic component compare
Ga0059261_0951 -0.5 -2.6 hypothetical protein compare
Ga0059261_2481 -0.5 -2.6 Ppx/GppA phosphatase family compare
Ga0059261_0852 -0.5 -2.8 Transcriptional regulators compare
Ga0059261_0448 -0.5 -1.1 hypothetical protein compare
Ga0059261_0197 -0.5 -0.7 hypothetical protein compare
Ga0059261_1114 -0.5 -1.8 hypothetical protein compare
Ga0059261_1119 -0.5 -1.0 Chemotaxis signal transduction protein compare
Ga0059261_0121 -0.5 -0.9 Sporulation related domain compare
Ga0059261_0445 -0.5 -2.0 hypothetical protein compare
Ga0059261_2742 -0.5 -1.6 non-canonical purine NTP pyrophosphatase, RdgB/HAM1 family compare
Ga0059261_2725 -0.5 -1.8 hypothetical protein compare
Ga0059261_1026 -0.5 -1.8 DNA repair protein RecN compare
Ga0059261_2529 -0.5 -3.2 Predicted integral membrane protein compare
Ga0059261_1032 -0.5 -1.9 protein CrcB compare
Ga0059261_3211 -0.5 -3.2 hypothetical protein compare
Ga0059261_0736 -0.5 -1.7 Protein of unknown function (DUF2842) compare
Ga0059261_3159 -0.5 -1.6 TolR protein compare
Ga0059261_1293 -0.5 -3.5 (p)ppGpp synthetase, RelA/SpoT family compare
Ga0059261_0671 -0.5 -2.1 Uncharacterized conserved protein compare
Ga0059261_2229 -0.5 -1.5 Predicted transcriptional regulators compare
Ga0059261_2378 -0.5 -1.3 phage virion morphogenesis (putative tail completion) protein compare
Ga0059261_0662 -0.5 -1.6 Truncated hemoglobins compare
Ga0059261_4056 -0.5 -3.3 Acetyl/propionyl-CoA carboxylase, alpha subunit compare
Ga0059261_2503 -0.5 -2.0 Predicted SPOUT methyltransferase compare
Ga0059261_0035 -0.4 -1.2 Uncharacterized protein conserved in bacteria compare
Ga0059261_3251 -0.4 -1.6 Transcriptional regulator compare
Ga0059261_4044 -0.4 -2.4 FOG: EAL domain compare
Ga0059261_1565 -0.4 -3.6 cytochrome bo3 quinol oxidase subunit 1 apoprotein (EC 1.10.3.-) compare
Ga0059261_3430 -0.4 -1.3 NADH:ubiquinone oxidoreductase 17.2 kD subunit compare
Ga0059261_3835 -0.4 -1.9 Universal stress protein UspA and related nucleotide-binding proteins compare
Ga0059261_3153 -0.4 -1.4 Uncharacterized protein conserved in bacteria compare
Ga0059261_4228 -0.4 -1.8 hypothetical protein compare
Ga0059261_2021 -0.4 -3.4 Protein of unknown function (DUF2029) compare
Ga0059261_1451 -0.4 -1.6 3-oxoacyl-[acyl-carrier-protein] reductase (EC 1.1.1.100) compare
Ga0059261_0811 -0.4 -1.2 Archaeal fructose-1,6-bisphosphatase and related enzymes of inositol monophosphatase family compare
Ga0059261_0136 -0.4 -1.6 Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation compare
Ga0059261_2277 -0.4 -1.1 hypothetical protein compare
Ga0059261_1339 -0.4 -0.9 hypothetical protein compare
Ga0059261_0747 -0.4 -2.2 Protein of unknown function (DUF2975) compare
Ga0059261_0647 -0.4 -1.9 tRNA pseudouridine(38-40) synthase compare
Ga0059261_3200 -0.4 -3.2 Opacity protein and related surface antigens compare
Ga0059261_4209 -0.4 -3.4 Transglycosylase SLT domain compare
Ga0059261_2768 -0.4 -0.9 hypothetical protein compare
Ga0059261_0757 -0.4 -1.3 Predicted transcriptional regulators compare
Ga0059261_0664 -0.4 -0.8 pseudouridine synthase, RluA family compare
Ga0059261_0656 -0.4 -1.5 Predicted dehydrogenases and related proteins compare
Ga0059261_3786 -0.4 -2.3 Malic enzyme compare
Ga0059261_3121 -0.4 -2.2 asparagine synthase (glutamine-hydrolyzing) compare
Ga0059261_1208 -0.4 -2.0 hypothetical protein compare
Ga0059261_1566 -0.4 -2.4 cytochrome o ubiquinol oxidase subunit II compare
Ga0059261_1795 -0.4 -1.6 Predicted nucleoside-diphosphate-sugar epimerases compare
Ga0059261_2458 -0.4 -2.1 DNA polymerase III, epsilon subunit and related 3'-5' exonucleases compare
Ga0059261_3956 -0.4 -2.3 amino acid/amide ABC transporter substrate-binding protein, HAAT family (TC 3.A.1.4.-) compare
Ga0059261_1431 -0.4 -1.5 hypothetical protein compare
Ga0059261_0654 -0.4 -1.4 Chemotaxis signal transduction protein compare
Ga0059261_0810 -0.4 -1.6 Predicted Zn-dependent proteases and their inactivated homologs compare
Ga0059261_2471 -0.4 -0.8 hypothetical protein compare
Ga0059261_3238 -0.4 -1.3 hypothetical protein compare
Ga0059261_2626 -0.4 -2.5 transcriptional regulator, DeoR family compare
Ga0059261_1713 -0.4 -1.5 hypothetical protein compare
Ga0059261_3552 -0.4 -2.3 hypothetical protein compare
Ga0059261_3595 -0.4 -1.8 Site-specific recombinase XerD compare
Ga0059261_0361 -0.4 -2.7 conserved hypothetical protein, YceG family compare
Ga0059261_0765 -0.4 -1.7 FecR family protein compare
Ga0059261_1934 -0.4 -1.4 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) compare
Ga0059261_1446 -0.4 -1.6 hypothetical protein compare
Ga0059261_2052 -0.4 -1.6 siroheme synthase, N-terminal domain compare
Ga0059261_3437 -0.4 -0.6 hypothetical protein compare
Ga0059261_0653 -0.4 -2.4 Response regulator receiver domain compare
Ga0059261_3472 -0.4 -2.1 Sporulation related domain compare
Ga0059261_1499 -0.3 -1.5 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
Ga0059261_2928 -0.3 -1.7 oxygen-dependent methionine synthase, putative oxygenase component MesX (from data) compare
Ga0059261_3938 -0.3 -2.0 Imidazolonepropionase and related amidohydrolases compare
Ga0059261_2892 -0.3 -1.2 hypothetical protein compare
Ga0059261_3013 -0.3 -1.5 transcriptional regulator, ArsR family compare
Ga0059261_1056 -0.3 -2.2 Etoposide-induced protein 2 compare
Ga0059261_1087 -0.3 -1.6 hypothetical protein compare
Ga0059261_3105 -0.3 -2.3 Methyltransferase domain compare
Ga0059261_0037 -0.3 -2.3 hypothetical protein compare
Ga0059261_2244 -0.3 -2.6 DNA polymerase I (EC 2.7.7.7) compare
Ga0059261_2314 -0.3 -1.3 Protein-disulfide isomerase compare
Ga0059261_3191 -0.3 -1.7 Glycosyltransferases involved in cell wall biogenesis compare
Ga0059261_1811 -0.3 -1.1 ATP:cob(I)alamin adenosyltransferase compare
Ga0059261_3335 -0.3 -0.9 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Sphingomonas koreensis DSMZ 15582 in stress experiments

For stress Chloramphenicol across organisms