Experiment set2IT088 for Sphingomonas koreensis DSMZ 15582

Compare to:

LB with Chloramphenicol 0.0001 mg/ml

200 most detrimental genes:

  gene name fitness t score description  
Ga0059261_2929 +0.8 2.2 oxygen-dependent methionine synthase, methyltransferase component MesD (from data) compare
Ga0059261_2086 +0.8 1.7 SAF-like compare
Ga0059261_0208 +0.8 3.7 Response regulator receiver domain compare
Ga0059261_0344 +0.8 2.0 Molecular chaperone (small heat shock protein) compare
Ga0059261_3759 +0.8 1.8 hypothetical protein compare
Ga0059261_3125 +0.7 1.8 Imidazoleglycerol-phosphate synthase compare
Ga0059261_2589 +0.6 2.3 Protein of unknown function (DUF2493) compare
Ga0059261_1774 +0.6 1.6 hypothetical protein compare
Ga0059261_0853 +0.6 1.5 peroxiredoxin, Ohr subfamily compare
Ga0059261_2109 +0.6 2.2 hypothetical protein compare
Ga0059261_0781 +0.5 1.3 hypothetical protein compare
Ga0059261_2548 +0.5 2.2 tRNA compare
Ga0059261_0931 +0.5 1.8 molybdenum cofactor biosynthesis protein MoaC compare
Ga0059261_0239 +0.5 0.9 tryptophan synthase, alpha chain (EC 4.2.1.20) compare
Ga0059261_0450 +0.5 2.8 Putative copper export protein compare
Ga0059261_0726 +0.5 1.6 hypothetical protein compare
Ga0059261_2063 +0.5 1.9 Flagellar biosynthesis protein, FliO compare
Ga0059261_1939 +0.5 0.6 putative phosphoesterase compare
Ga0059261_0390 +0.5 1.3 Ribbon-helix-helix protein, copG family compare
Ga0059261_1071 +0.5 1.3 hypothetical protein compare
Ga0059261_0153 +0.5 1.5 Serine acetyltransferase compare
Ga0059261_3289 +0.5 0.9 Predicted membrane protein compare
Ga0059261_0304 +0.5 1.1 Bacterioferritin-associated ferredoxin compare
Ga0059261_2913 +0.5 1.4 Type IV secretory pathway, VirB2 components (pilins) compare
Ga0059261_3545 +0.5 1.3 hypothetical protein compare
Ga0059261_1078 +0.5 1.6 Response regulator receiver domain compare
Ga0059261_3280 +0.4 1.2 Uncharacterized conserved protein compare
Ga0059261_2076 +0.4 1.2 hypothetical protein compare
Ga0059261_3556 +0.4 1.5 transcriptional regulator, TetR family compare
Ga0059261_2154 +0.4 1.5 uncharacterized domain 1 compare
Ga0059261_0305 +0.4 2.0 bacterioferritin compare
Ga0059261_0586 +0.4 1.6 hypothetical protein compare
Ga0059261_3752 +0.4 1.7 Uncharacterized protein conserved in bacteria compare
Ga0059261_3871 +0.4 1.2 formate dehydrogenase family accessory protein FdhD compare
Ga0059261_3064 +0.4 1.0 hypothetical protein compare
Ga0059261_3271 +0.4 0.6 arsenate reductase (glutaredoxin) compare
Ga0059261_0875 +0.4 1.1 Leucyl aminopeptidase compare
Ga0059261_0087 +0.4 0.8 hypothetical protein compare
Ga0059261_1145 +0.4 1.0 flagella basal body P-ring formation protein FlgA compare
Ga0059261_3909 +0.4 1.3 Predicted membrane protein compare
Ga0059261_1574 +0.4 1.5 Superfamily II DNA and RNA helicases compare
Ga0059261_1273 +0.4 1.9 DnaJ domain compare
Ga0059261_0268 +0.4 2.1 Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily compare
Ga0059261_0045 +0.4 1.5 hypothetical protein compare
Ga0059261_1519 +0.4 1.3 NUDIX domain compare
Ga0059261_1191 +0.4 1.7 RNA polymerase sigma factor, sigma-70 family compare
Ga0059261_3381 +0.4 2.1 Arabinose efflux permease compare
Ga0059261_3581 +0.4 2.2 Alpha/beta hydrolase family compare
Ga0059261_2914 +0.4 1.5 Type IV secretory pathway, TrbD component compare
Ga0059261_2531 +0.4 0.9 conserved hypothetical integral membrane protein compare
Ga0059261_3308 +0.4 1.5 Uncharacterized conserved protein compare
Ga0059261_0796 +0.4 0.5 Uncharacterized conserved protein, contains double-stranded beta-helix domain compare
Ga0059261_2347 +0.4 0.9 hypothetical protein compare
Ga0059261_1050 +0.4 1.0 hypothetical protein compare
Ga0059261_4190 +0.4 2.7 Periplasmic protein involved in polysaccharide export compare
Ga0059261_4013 +0.4 0.6 hypothetical protein compare
Ga0059261_1261 +0.4 1.1 hypothetical protein compare
Ga0059261_1826 +0.4 1.9 Domain of unknown function (DUF1905) compare
Ga0059261_0451 +0.4 1.2 hypothetical protein compare
Ga0059261_1163 +0.4 1.6 Copper chaperone compare
Ga0059261_1768 +0.4 1.1 Sigma-70 region 2 compare
Ga0059261_3703 +0.4 2.0 Uncharacterized conserved protein compare
Ga0059261_0102 +0.3 2.4 endopeptidase La compare
Ga0059261_3082 +0.3 2.0 Prophage CP4-57 regulatory protein (AlpA) compare
Ga0059261_0237 +0.3 1.3 phosphoribosylanthranilate isomerase (EC 5.3.1.24) compare
Ga0059261_3605 +0.3 1.2 tRNA compare
Ga0059261_0264 +0.3 2.3 HAD superfamily, subfamily IIIB (Acid phosphatase) compare
Ga0059261_1381 +0.3 1.3 Membrane protease subunits, stomatin/prohibitin homologs compare
Ga0059261_0223 +0.3 1.1 Peptidase inhibitor I78 family compare
Ga0059261_1610 +0.3 2.0 CBS domain/Transporter associated domain compare
Ga0059261_1161 +0.3 2.2 Cu(I)-responsive transcriptional regulator compare
Ga0059261_2830 +0.3 1.6 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
Ga0059261_2373 +0.3 1.6 hypothetical protein compare
Ga0059261_0887 +0.3 1.2 Predicted transcriptional regulators compare
Ga0059261_4134 +0.3 1.3 tRNA compare
Ga0059261_0672 +0.3 2.2 Domain of unknown function (DUF955) compare
Ga0059261_3579 +0.3 1.6 hypothetical protein compare
Ga0059261_1253 +0.3 1.2 Uncharacterized protein conserved in bacteria compare
Ga0059261_1530 +0.3 1.1 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases compare
Ga0059261_1957 +0.3 1.6 hypothetical protein compare
Ga0059261_3400 +0.3 2.6 diguanylate cyclase (GGDEF) domain compare
Ga0059261_1077 +0.3 2.0 STAS domain compare
Ga0059261_3359 +0.3 1.1 Zn-dependent hydrolases, including glyoxylases compare
Ga0059261_0199 +0.3 1.5 hypothetical protein compare
Ga0059261_2263 +0.3 1.8 ATP phosphoribosyltransferase involved in histidine biosynthesis compare
Ga0059261_0850 +0.3 0.7 hypothetical protein compare
Ga0059261_2675 +0.3 2.1 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
Ga0059261_1557 +0.3 1.5 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase compare
Ga0059261_0497 +0.3 1.6 hypothetical protein compare
Ga0059261_1389 +0.3 1.8 Mechanosensitive ion channel compare
Ga0059261_1962 +0.3 1.0 RNase HII (EC 3.1.26.4) compare
Ga0059261_0864 +0.3 0.8 hypothetical protein compare
Ga0059261_0596 +0.3 1.3 Cation efflux family compare
Ga0059261_1318 +0.3 1.1 Uncharacterized MobA-related protein compare
Ga0059261_0266 +0.3 0.8 hypothetical protein compare
Ga0059261_2743 +0.3 1.1 hypothetical protein compare
Ga0059261_2089 +0.3 1.7 flagellar basal-body rod protein FlgB compare
Ga0059261_1549 +0.3 1.2 hypothetical protein compare
Ga0059261_3006 +0.3 1.1 hypothetical protein compare
Ga0059261_2216 +0.3 1.7 pyridoxal phosphate enzyme, YggS family compare
Ga0059261_1536 +0.3 2.0 Glutathione S-transferase compare
Ga0059261_0921 +0.3 0.8 hypothetical protein compare
Ga0059261_3197 +0.3 1.8 Acetyltransferases, including N-acetylases of ribosomal proteins compare
Ga0059261_2992 +0.3 1.2 Biopolymer transport protein compare
Ga0059261_2445 +0.3 1.6 hypothetical protein compare
Ga0059261_3061 +0.3 1.9 Type IV secretory pathway, protease TraF compare
Ga0059261_4029 +0.3 1.7 hypothetical protein compare
Ga0059261_3168 +0.3 1.2 peroxiredoxin, OsmC subfamily compare
Ga0059261_4001 +0.3 1.6 NTP pyrophosphohydrolases including oxidative damage repair enzymes compare
Ga0059261_2746 +0.3 1.2 Predicted sugar nucleotidyltransferases compare
Ga0059261_1517 +0.3 1.6 Predicted acetyltransferase compare
Ga0059261_0612 +0.3 1.2 RNA polymerase sigma factor, sigma-70 family compare
Ga0059261_0039 +0.3 1.6 His Kinase A (phospho-acceptor) domain compare
Ga0059261_3164 +0.3 1.3 Protein of unknown function (DUF3297) compare
Ga0059261_2095 +0.3 1.9 Flagellar basal body L-ring protein compare
Ga0059261_0431 +0.3 1.9 Domain of unknown function (DUF305) compare
Ga0059261_1361 +0.3 2.2 sugar transferase, PEP-CTERM system associated/exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase compare
Ga0059261_1380 +0.3 2.0 Membrane protease subunits, stomatin/prohibitin homologs compare
Ga0059261_0447 +0.3 1.4 SnoaL-like domain compare
Ga0059261_3365 +0.3 1.0 hypothetical protein compare
Ga0059261_0812 +0.3 1.2 Short-chain alcohol dehydrogenase of unknown specificity compare
Ga0059261_0738 +0.3 1.4 Predicted transcriptional regulators compare
Ga0059261_0756 +0.3 1.1 Uncharacterized protein conserved in bacteria compare
Ga0059261_1057 +0.3 1.2 hypothetical protein compare
Ga0059261_3650 +0.3 0.9 hypothetical protein compare
Ga0059261_2680 +0.3 0.4 hypothetical protein compare
Ga0059261_2097 +0.3 1.2 Rod binding protein compare
Ga0059261_3722 +0.3 1.8 Methyltransferase domain compare
Ga0059261_3443 +0.3 1.5 hypothetical protein compare
Ga0059261_1831 +0.3 0.9 hypothetical protein compare
Ga0059261_0556 +0.3 0.9 Signal transduction histidine kinase compare
Ga0059261_1337 +0.3 1.2 Predicted enzyme related to lactoylglutathione lyase compare
Ga0059261_3285 +0.3 0.9 Acyl dehydratase compare
Ga0059261_2950 +0.3 1.8 hypothetical protein compare
Ga0059261_0935 +0.3 1.2 Uncharacterized conserved protein compare
Ga0059261_0269 +0.2 1.5 Dioxygenases related to 2-nitropropane dioxygenase compare
Ga0059261_3638 +0.2 0.8 Predicted integral membrane protein (DUF2282) compare
Ga0059261_2558 +0.2 1.7 DoxX-like family compare
Ga0059261_1262 +0.2 2.1 cobaltochelatase CobS subunit (EC 6.6.1.2) compare
Ga0059261_1110 +0.2 1.4 flagellar biosynthetic protein FliP compare
Ga0059261_3367 +0.2 1.3 hypothetical protein compare
Ga0059261_3364 +0.2 2.1 PEP-CTERM/exosortase A-associated glycosyltransferase, Daro_2409 family compare
Ga0059261_3362 +0.2 2.2 Lipid A core - O-antigen ligase and related enzymes compare
Ga0059261_0911 +0.2 0.8 Domain of unknown function (DUF3597) compare
Ga0059261_2713 +0.2 0.4 hypothetical protein compare
Ga0059261_4067 +0.2 1.8 Short-chain alcohol dehydrogenase of unknown specificity compare
Ga0059261_4083 +0.2 1.1 two component transcriptional regulator, LuxR family compare
Ga0059261_1039 +0.2 1.6 hypothetical protein compare
Ga0059261_3668 +0.2 1.3 ABC transporter compare
Ga0059261_1837 +0.2 0.8 Staphylococcal nuclease homologue compare
Ga0059261_1724 +0.2 0.7 hypothetical protein compare
Ga0059261_1108 +0.2 1.7 Surface presentation of antigens (SPOA) compare
Ga0059261_1527 +0.2 0.6 hypothetical protein compare
Ga0059261_3287 +0.2 1.9 Topoisomerase IB compare
Ga0059261_0867 +0.2 1.4 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
Ga0059261_3948 +0.2 0.6 type II secretion system protein H compare
Ga0059261_1595 +0.2 2.1 Membrane protein involved in the export of O-antigen and teichoic acid compare
Ga0059261_1787 +0.2 1.5 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
Ga0059261_3169 +0.2 1.4 phosphoglycerate mutase, BPG-dependent, family 1 compare
Ga0059261_2985 +0.2 1.2 FecR family protein compare
Ga0059261_0191 +0.2 1.4 hypothetical protein compare
Ga0059261_0032 +0.2 1.1 Protein of unknown function, DUF488 compare
Ga0059261_0675 +0.2 1.2 hypothetical protein compare
Ga0059261_2442 +0.2 1.2 Predicted membrane protein compare
Ga0059261_0262 +0.2 1.8 Transcriptional regulator compare
Ga0059261_4202 +0.2 1.7 Putative bacterial sensory transduction regulator compare
Ga0059261_2897 +0.2 1.0 hypothetical protein compare
Ga0059261_3716 +0.2 1.7 hypothetical protein compare
Ga0059261_1839 +0.2 1.5 hypothetical protein compare
Ga0059261_0787 +0.2 1.3 Mg chelatase-related protein compare
Ga0059261_1737 +0.2 1.0 hypothetical protein compare
Ga0059261_1880 +0.2 1.2 Uncharacterized conserved protein compare
Ga0059261_1197 +0.2 1.0 hypothetical protein compare
Ga0059261_2877 +0.2 1.4 acetyl-CoA acetyltransferases compare
Ga0059261_1291 +0.2 0.8 transcriptional regulator, HxlR family compare
Ga0059261_1596 +0.2 0.7 CBS domain compare
Ga0059261_2132 +0.2 0.9 transcriptional regulator, BadM/Rrf2 family compare
Ga0059261_2058 +0.2 1.8 Flagellar capping protein compare
Ga0059261_1597 +0.2 1.4 hypothetical protein compare
Ga0059261_2469 +0.2 1.3 Predicted acetyltransferase compare
Ga0059261_1138 +0.2 0.9 hypothetical protein compare
Ga0059261_3801 +0.2 1.0 Phosphate/sulphate permeases compare
Ga0059261_1550 +0.2 1.7 hypothetical protein compare
Ga0059261_0098 +0.2 1.3 Carbohydrate binding domain compare
Ga0059261_0257 +0.2 1.2 hypothetical protein compare
Ga0059261_4183 +0.2 1.7 Predicted ATPase compare
Ga0059261_3052 +0.2 1.1 Uncharacterized conserved protein (DUF2285) compare
Ga0059261_3361 +0.2 1.9 hypothetical protein compare
Ga0059261_2395 +0.2 0.8 hypothetical protein compare
Ga0059261_0523 +0.2 1.4 Uncharacterized protein conserved in bacteria compare
Ga0059261_3141 +0.2 0.8 Acetyltransferases compare
Ga0059261_1336 +0.2 1.5 transcriptional regulator, HxlR family compare
Ga0059261_3132 +0.2 1.2 hypothetical protein compare
Ga0059261_3670 +0.2 0.8 tRNA compare
Ga0059261_1490 +0.2 1.9 Glycosyltransferase compare
Ga0059261_4124 +0.2 1.2 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases compare
Ga0059261_1638 +0.2 1.4 transcriptional regulator, GntR family compare
Ga0059261_3174 +0.2 1.2 EF hand compare
Ga0059261_3658 +0.2 1.7 hypothetical protein compare
Ga0059261_4193 +0.2 1.9 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Sphingomonas koreensis DSMZ 15582 in stress experiments

For stress Chloramphenicol across organisms