Experiment set2IT088 for Burkholderia phytofirmans PsJN

Compare to:

inner cut, LB soft agar motility assay

200 most important genes:

  gene name fitness t score description  
BPHYT_RS16710 -5.4 -1.4 LysR family transcriptional regulator compare
BPHYT_RS14855 -5.3 -2.4 ADP-L-glycero-D-manno-heptose-6-epimerase compare
BPHYT_RS14865 -5.1 -3.6 UDP-glucose 6-dehydrogenase compare
BPHYT_RS02860 -4.7 -1.3 membrane protein compare
BPHYT_RS15075 -4.4 -2.5 dihydrokaempferol 4-reductase compare
BPHYT_RS23840 -4.3 -3.0 methyltransferase compare
BPHYT_RS08960 -4.3 -2.0 threonine synthase compare
BPHYT_RS18895 -4.2 -6.3 flagellar basal body rod protein FlgB compare
BPHYT_RS12615 -4.0 -1.5 dihydrodipicolinate synthase compare
BPHYT_RS01485 -4.0 -1.1 histidine kinase compare
BPHYT_RS08850 -3.8 -2.6 transcriptional regulator compare
BPHYT_RS19115 -3.8 -2.5 acyl carrier protein compare
BPHYT_RS14395 -3.6 -9.2 sugar dehydratase compare
BPHYT_RS03655 -3.5 -1.3 membrane protein compare
BPHYT_RS16840 -3.5 -2.4 transketolase compare
BPHYT_RS12465 -3.5 -3.3 inositol monophosphatase compare
BPHYT_RS16175 -3.4 -2.7 hemolysin D compare
BPHYT_RS09515 -3.4 -4.6 phosphoribosylformylglycinamidine synthase compare
BPHYT_RS04370 -3.4 -1.8 glycosyl transferase compare
BPHYT_RS04290 -3.4 -2.4 glycosyl transferase family 2 compare
BPHYT_RS14400 -3.4 -1.9 anti-sigma factor compare
BPHYT_RS18970 -3.4 -15.3 chemotaxis protein compare
BPHYT_RS02865 -3.4 -4.5 hypothetical protein compare
BPHYT_RS06175 -3.3 -6.4 LPS biosynthesis compare
BPHYT_RS06685 -3.3 -2.0 NADH:ubiquinone oxidoreductase subunit M compare
BPHYT_RS18825 -3.3 -6.7 flagellar biosynthesis protein FliP compare
BPHYT_RS03640 -3.2 -4.6 phosphoribosylformylglycinamidine cyclo-ligase compare
BPHYT_RS25970 -3.2 -1.2 urea amidolyase compare
BPHYT_RS08565 -3.2 -1.7 dihydroorotate dehydrogenase compare
BPHYT_RS06190 -3.1 -3.1 heptosyltransferase compare
BPHYT_RS03400 -3.1 -1.2 ATP-dependent DNA helicase RecG compare
BPHYT_RS18765 -3.1 -9.9 flagellar biosynthesis protein FliS compare
BPHYT_RS18840 -3.1 -9.9 flagellar hook-associated protein FlgL compare
BPHYT_RS03725 -3.1 -2.0 serine hydroxymethyltransferase compare
BPHYT_RS18875 -3.1 -5.8 flagellar basal body rod protein FlgF compare
BPHYT_RS16255 -3.0 -5.1 phosphoribosylaminoimidazole-succinocarboxamide synthase compare
BPHYT_RS18800 -3.0 -6.1 flagellar hook-length control protein compare
BPHYT_RS02965 -3.0 -3.9 membrane protein compare
BPHYT_RS18870 -3.0 -7.3 flagellar basal body rod protein FlgG compare
BPHYT_RS33515 -3.0 -8.5 porin compare
BPHYT_RS18795 -3.0 -8.1 flagellar export protein FliJ compare
BPHYT_RS18845 -3.0 -13.2 flagellar hook-associated protein FlgK conserved
BPHYT_RS18880 -2.9 -11.2 flagellar hook protein FlgE compare
BPHYT_RS18910 -2.9 -1.8 FlgN compare
BPHYT_RS19125 -2.9 -4.6 short-chain dehydrogenase compare
BPHYT_RS36275 -2.8 -1.9 hypothetical protein compare
BPHYT_RS18810 -2.8 -8.9 flagellar motor switch protein FliM compare
BPHYT_RS17890 -2.8 -2.0 shikimate kinase compare
BPHYT_RS18885 -2.8 -5.2 flagellar basal body rod modification protein FlgD compare
BPHYT_RS15620 -2.8 -4.3 peptidyl-prolyl cis-trans isomerase compare
BPHYT_RS19085 -2.8 -4.7 flagellin compare
BPHYT_RS18855 -2.8 -5.6 flagellar rod assembly protein FlgJ compare
BPHYT_RS16215 -2.7 -6.0 sensor histidine kinase compare
BPHYT_RS01795 -2.7 -5.5 histidine kinase compare
BPHYT_RS19000 -2.7 -9.4 chemotaxis protein CheA compare
BPHYT_RS01455 -2.7 -1.0 peptide deformylase compare
BPHYT_RS19015 -2.6 -10.5 flagellar motor protein MotA conserved
BPHYT_RS18775 -2.6 -14.2 flagellar M-ring protein FliF compare
BPHYT_RS19120 -2.6 -6.0 3-oxoacyl-ACP synthase compare
BPHYT_RS16245 -2.6 -4.9 phosphoribosylaminoimidazole carboxylase compare
BPHYT_RS18990 -2.6 -4.2 chemotaxis protein compare
BPHYT_RS18900 -2.6 -12.4 flagella basal body P-ring formation protein FlgA compare
BPHYT_RS18790 -2.6 -8.3 ATP synthase compare
BPHYT_RS18865 -2.6 -3.7 flagellar L-ring protein FlgH compare
BPHYT_RS18830 -2.5 -9.0 flagellar biosynthesis protein FliQ compare
BPHYT_RS18890 -2.5 -7.1 flagellar basal body rod protein FlgC compare
BPHYT_RS19105 -2.5 -8.4 aminotransferase compare
BPHYT_RS15710 -2.5 -2.3 ATP-dependent Clp protease ATP-binding protein compare
BPHYT_RS16835 -2.5 -6.3 glyceraldehyde-3-phosphate dehydrogenase compare
BPHYT_RS01790 -2.5 -13.8 LuxR family transcriptional regulator compare
BPHYT_RS18945 -2.5 -5.4 flagellar biosynthesis protein FlhB compare
BPHYT_RS06530 -2.5 -1.0 membrane protein compare
BPHYT_RS31400 -2.5 -0.8 methyl-accepting chemotaxis protein compare
BPHYT_RS14060 -2.4 -1.7 peptidase M23 compare
BPHYT_RS18785 -2.3 -1.6 flagellar assembly protein FliH compare
BPHYT_RS19100 -2.3 -9.8 hypothetical protein compare
BPHYT_RS04285 -2.3 -1.4 rhamnosyltransferase compare
BPHYT_RS34815 -2.3 -2.0 ABC transporter compare
BPHYT_RS16340 -2.3 -7.3 succinyl-CoA synthetase subunit alpha compare
BPHYT_RS25870 -2.3 -1.0 type III secretion system ATPase compare
BPHYT_RS18935 -2.2 -8.8 flagellar biosynthesis regulator FlhF compare
BPHYT_RS15615 -2.2 -4.2 4-hydroxy-3-methylbut-2-enyl diphosphate reductase compare
BPHYT_RS09315 -2.2 -1.0 chemotaxis protein CheY compare
BPHYT_RS06350 -2.2 -2.6 chemotaxis protein CheY compare
BPHYT_RS24315 -2.2 -1.8 phosphoribosyltransferase compare
BPHYT_RS17100 -2.2 -7.2 RNA pyrophosphohydrolase compare
BPHYT_RS24500 -2.1 -1.8 histidine kinase compare
BPHYT_RS16345 -2.1 -4.8 succinyl-CoA ligase [ADP-forming] subunit beta compare
BPHYT_RS16210 -2.1 -3.3 peptidase compare
BPHYT_RS06325 -2.1 -6.5 ATPase compare
BPHYT_RS28365 -2.1 -1.4 Germin subfamily 1 member 15 compare
BPHYT_RS29320 -2.1 -2.1 histidine kinase compare
BPHYT_RS16270 -2.1 -3.0 phosphoglycerate kinase compare
BPHYT_RS29620 -2.1 -0.9 hypothetical protein compare
BPHYT_RS18925 -2.1 -5.6 RNA polymerase sigma70 compare
BPHYT_RS02285 -2.0 -4.5 cell division protein compare
BPHYT_RS17165 -2.0 -4.7 cell division protein ZapD compare
BPHYT_RS18860 -2.0 -4.1 flagellar P-ring protein FlgI compare
BPHYT_RS18980 -2.0 -6.1 chemotaxis protein CheR compare
BPHYT_RS14735 -2.0 -1.2 hypothetical protein compare
BPHYT_RS16020 -2.0 -1.8 AsnC family transcriptional regulator compare
BPHYT_RS09500 -2.0 -2.3 glucose-6-phosphate isomerase compare
BPHYT_RS34655 -1.9 -1.5 2-amino-3-ketobutyrate CoA ligase compare
BPHYT_RS09620 -1.9 -2.9 aminodeoxychorismate lyase compare
BPHYT_RS33920 -1.9 -6.8 type II citrate synthase compare
BPHYT_RS18965 -1.9 -1.5 chemotaxis protein CheY compare
BPHYT_RS19010 -1.9 -5.1 flagellar motor protein MotB conserved
BPHYT_RS35770 -1.9 -1.2 glyoxalase compare
BPHYT_RS17520 -1.9 -3.6 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase compare
BPHYT_RS02590 -1.8 -9.7 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase compare
BPHYT_RS22360 -1.8 -2.6 response regulator receiver compare
BPHYT_RS32880 -1.8 -1.3 alanine acetyltransferase compare
BPHYT_RS18995 -1.8 -7.0 purine-binding chemotaxis protein compare
BPHYT_RS18930 -1.8 -4.7 flagellar biosynthesis protein FlhG compare
BPHYT_RS18940 -1.8 -4.2 flagellar biosynthesis protein FlhA compare
BPHYT_RS20235 -1.8 -5.1 iron ABC transporter compare
BPHYT_RS02525 -1.8 -7.1 membrane protein compare
BPHYT_RS02005 -1.7 -2.0 diguanylate phosphodiesterase compare
BPHYT_RS17885 -1.7 -4.7 3-dehydroquinate synthase compare
BPHYT_RS18985 -1.7 -2.2 hypothetical protein compare
BPHYT_RS30040 -1.7 -1.2 hypothetical protein compare
BPHYT_RS33535 -1.7 -11.3 RNA polymerase sigma factor RpoD compare
BPHYT_RS06550 -1.7 -2.9 acetolactate synthase compare
BPHYT_RS23230 -1.7 -1.1 histidine kinase compare
BPHYT_RS18610 -1.7 -5.8 lytic transglycosylase compare
BPHYT_RS34560 -1.7 -2.9 hypothetical protein compare
BPHYT_RS19025 -1.7 -4.9 transcriptional regulator compare
BPHYT_RS02130 -1.7 -2.5 hydroxymethylglutaryl-CoA lyase compare
BPHYT_RS19130 -1.7 -3.1 acetyltransferase compare
BPHYT_RS21130 -1.7 -2.3 F420-dependent oxidoreductase compare
BPHYT_RS02975 -1.7 -2.4 membrane protein compare
BPHYT_RS06975 -1.7 -2.3 glutamate racemase compare
BPHYT_RS32395 -1.7 -1.0 hypothetical protein compare
BPHYT_RS05010 -1.7 -3.8 RpiR family transcriptional regulator compare
BPHYT_RS17530 -1.6 -5.9 3-octaprenyl-4-hydroxybenzoate carboxy-lyase compare
BPHYT_RS18415 -1.6 -3.2 hypothetical protein compare
BPHYT_RS20245 -1.6 -6.0 iron ABC transporter substrate-binding protein compare
BPHYT_RS35005 -1.6 -4.3 molecular chaperone DnaJ compare
BPHYT_RS04010 -1.6 -1.1 glycosyl transferase compare
BPHYT_RS06375 -1.6 -4.7 ribonuclease compare
BPHYT_RS06405 -1.6 -4.5 phosphoribosylamine--glycine ligase compare
BPHYT_RS11765 -1.6 -0.9 polyamine ABC transporter permease compare
BPHYT_RS26855 -1.6 -3.0 carboxyvinyl-carboxyphosphonate phosphorylmutase compare
BPHYT_RS36365 -1.5 -2.1 hypothetical protein compare
BPHYT_RS07325 -1.5 -0.9 GntR family transcriptional regulator compare
BPHYT_RS36005 -1.5 -4.8 hypothetical protein compare
BPHYT_RS01625 -1.5 -2.9 chemotaxis protein CheY compare
BPHYT_RS36000 -1.5 -1.6 hypothetical protein compare
BPHYT_RS04955 -1.5 -1.9 methionyl-tRNA synthetase compare
BPHYT_RS12295 -1.5 -1.9 LysR family transcriptional regulator compare
BPHYT_RS36220 -1.5 -1.3 hypothetical protein compare
BPHYT_RS29920 -1.5 -0.9 hypothetical protein compare
BPHYT_RS22530 -1.5 -1.2 N5,N10-methylene tetrahydromethanopterin reductase compare
BPHYT_RS14250 -1.5 -7.7 glycosyl transferase compare
BPHYT_RS23270 -1.5 -1.3 enoyl-CoA hydratase compare
BPHYT_RS01425 -1.5 -4.1 3-phosphoglycerate dehydrogenase compare
BPHYT_RS11705 -1.5 -0.8 hypothetical protein compare
BPHYT_RS01955 -1.5 -2.7 hypothetical protein compare
BPHYT_RS11125 -1.4 -1.2 alkylhydroperoxidase compare
BPHYT_RS06760 -1.4 -4.1 3-hydroxyacyl-CoA dehydrogenase compare
BPHYT_RS06320 -1.4 -2.0 chemotaxis protein CheY compare
BPHYT_RS01620 -1.4 -5.8 sensor histidine kinase compare
BPHYT_RS09000 -1.4 -1.0 competence protein ComE compare
BPHYT_RS34780 -1.4 -3.6 phytoene synthase compare
BPHYT_RS13245 -1.4 -4.1 hypothetical protein compare
BPHYT_RS18780 -1.4 -2.6 flagellar motor switch protein FliG compare
BPHYT_RS06410 -1.4 -1.5 transcriptional regulator compare
BPHYT_RS28830 -1.4 -0.7 LysR family transcriptional regulator compare
BPHYT_RS34805 -1.4 -3.8 ABC transporter compare
BPHYT_RS26685 -1.4 -0.9 precorrin-8X methylmutase compare
BPHYT_RS30485 -1.4 -1.0 ABC transporter ATP-binding protein compare
BPHYT_RS26280 -1.4 -1.8 hypothetical protein compare
BPHYT_RS07900 -1.4 -1.6 hypothetical protein compare
BPHYT_RS08060 -1.4 -5.0 ribosome maturation factor RimP compare
BPHYT_RS18805 -1.4 -3.0 flagellar basal body protein FliL compare
BPHYT_RS11535 -1.4 -2.6 membrane protein compare
BPHYT_RS09480 -1.4 -1.1 peptidyl-prolyl cis-trans isomerase compare
BPHYT_RS08955 -1.4 -3.7 homoserine dehydrogenase compare
BPHYT_RS02415 -1.4 -4.3 cytochrome C550 compare
BPHYT_RS17830 -1.4 -2.6 histidine kinase compare
BPHYT_RS36600 -1.3 -2.1 lytic transglycosylase compare
BPHYT_RS14255 -1.3 -7.4 ABC transporter compare
BPHYT_RS15020 -1.3 -6.0 tetratricopeptide repeat protein compare
BPHYT_RS21870 -1.3 -1.6 hypothetical protein compare
BPHYT_RS33540 -1.3 -2.4 hypothetical protein compare
BPHYT_RS26925 -1.3 -1.0 NIPSNAP family containing protein compare
BPHYT_RS19565 -1.3 -8.1 gamma-glutamyl:cysteine ligase compare
BPHYT_RS17035 -1.3 -2.4 sugar kinase compare
BPHYT_RS19305 -1.3 -3.1 ATP-dependent DNA helicase Rep compare
BPHYT_RS09385 -1.3 -0.8 FAD-dependent oxidoreductase compare
BPHYT_RS18255 -1.3 -1.7 phenylacetate-CoA oxygenase subunit PaaB compare
BPHYT_RS35835 -1.3 -2.5 hypothetical protein compare
BPHYT_RS12840 -1.3 -2.9 pyruvate dehydrogenase compare
BPHYT_RS21990 -1.3 -2.3 FAD-dependent oxidoreductase compare
BPHYT_RS09105 -1.3 -3.8 protein-L-isoaspartate O-methyltransferase compare
BPHYT_RS05190 -1.3 -2.5 ADP-heptose--LPS heptosyltransferase compare
BPHYT_RS12380 -1.3 -2.4 ABC transporter permease compare
BPHYT_RS05615 -1.3 -1.1 hypothetical protein compare
BPHYT_RS01630 -1.3 -1.5 ATP-dependent protease ATPase subunit HslU compare
BPHYT_RS15415 -1.3 -6.9 3-octaprenyl-4-hydroxybenzoate carboxy-lyase compare


Specific Phenotypes

For 6 genes in this experiment

For motility Agar in Burkholderia phytofirmans PsJN

For motility Agar across organisms