Experiment set2IT088 for Burkholderia phytofirmans PsJN

Compare to:

inner cut, LB soft agar motility assay

200 most detrimental genes:

  gene name fitness t score description  
BPHYT_RS30795 +2.7 1.4 short-chain dehydrogenase compare
BPHYT_RS18420 +2.3 2.5 hypothetical protein compare
BPHYT_RS36150 +2.2 1.9 hypothetical protein compare
BPHYT_RS29245 +2.2 1.9 peptidase M23 compare
BPHYT_RS17265 +2.0 3.0 cell division protein compare
BPHYT_RS35205 +1.7 2.6 hypothetical protein compare
BPHYT_RS33905 +1.7 3.1 3-isopropylmalate dehydratase small subunit compare
BPHYT_RS33765 +1.7 2.3 membrane protein compare
BPHYT_RS22540 +1.7 2.6 metal ABC transporter permease compare
BPHYT_RS14140 +1.7 5.3 phosphate transporter permease subunit PstC compare
BPHYT_RS13645 +1.6 11.7 threonine--tRNA ligase compare
BPHYT_RS35495 +1.6 3.3 nucleotide pyrophosphohydrolase compare
BPHYT_RS32210 +1.5 0.8 hypothetical protein compare
BPHYT_RS03405 +1.5 2.8 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
BPHYT_RS25395 +1.5 1.4 3-oxoacyl-ACP reductase compare
BPHYT_RS07570 +1.5 1.7 hypothetical protein compare
BPHYT_RS15305 +1.5 6.8 guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase compare
BPHYT_RS31970 +1.4 2.8 cupin compare
BPHYT_RS36185 +1.4 1.8 hypothetical protein compare
BPHYT_RS26820 +1.4 1.0 LysR family transcriptional regulator compare
BPHYT_RS25075 +1.4 1.9 AraC family transcriptional regulator compare
BPHYT_RS02650 +1.3 2.3 membrane protein compare
BPHYT_RS10695 +1.3 2.1 aromatic-ring-hydroxylating dioxygenase subunit beta compare
BPHYT_RS03900 +1.3 1.4 phospholipid-binding protein compare
BPHYT_RS33690 +1.3 1.0 molybdate ABC transporter permease compare
BPHYT_RS33260 +1.3 3.5 hypothetical protein compare
BPHYT_RS16335 +1.3 1.5 membrane protein compare
BPHYT_RS27060 +1.3 1.3 photosystem reaction center subunit H compare
BPHYT_RS11825 +1.3 1.4 cytosine deaminase compare
BPHYT_RS03065 +1.3 2.2 LuxR family transcriptional regulator compare
BPHYT_RS10470 +1.3 3.0 hypothetical protein compare
BPHYT_RS31960 +1.3 1.9 hypothetical protein compare
BPHYT_RS15325 +1.3 2.9 ribonuclease PH compare
BPHYT_RS31260 +1.2 2.4 histidine kinase compare
BPHYT_RS07925 +1.2 2.6 glutamine amidotransferase compare
BPHYT_RS34295 +1.2 1.2 fimbrial protein compare
BPHYT_RS00750 +1.2 1.0 SpoVT/AbrB domain-containing protein compare
BPHYT_RS30300 +1.2 1.1 FMN reductase compare
BPHYT_RS29720 +1.2 1.1 molybdopterin-guanine dinucleotide biosynthesis protein MobA compare
BPHYT_RS31675 +1.2 1.9 hypothetical protein compare
BPHYT_RS30395 +1.2 1.8 small mechanosensitive ion channel protein MscS compare
BPHYT_RS24690 +1.2 6.2 ionic transporter y4hA compare
BPHYT_RS31390 +1.2 1.8 hypothetical protein compare
BPHYT_RS07210 +1.2 2.6 permease compare
BPHYT_RS13250 +1.1 2.0 hypothetical protein compare
BPHYT_RS20085 +1.1 1.7 mannosyltransferase compare
BPHYT_RS19890 +1.1 1.5 hypothetical protein compare
BPHYT_RS05880 +1.1 2.8 hypothetical protein compare
BPHYT_RS12280 +1.1 1.2 RNA helicase compare
BPHYT_RS35735 +1.1 1.4 nitroreductase compare
BPHYT_RS08615 +1.1 1.4 hypothetical protein compare
BPHYT_RS19735 +1.1 2.6 hypothetical protein compare
BPHYT_RS36555 +1.1 5.0 hypothetical protein compare
BPHYT_RS13080 +1.1 1.3 hypothetical protein compare
BPHYT_RS18655 +1.0 2.2 3-oxoacyl-ACP synthase compare
BPHYT_RS20630 +1.0 1.3 patatin compare
BPHYT_RS26940 +1.0 3.3 nuclease compare
BPHYT_RS00530 +1.0 1.1 hypothetical protein compare
BPHYT_RS33820 +1.0 6.5 histidine kinase compare
BPHYT_RS10465 +1.0 2.1 hypothetical protein compare
BPHYT_RS34240 +1.0 1.1 ABC transporter for L-rhamnose/L-fucose/xylitol, permease component (from data) compare
BPHYT_RS09355 +1.0 1.4 LysR family transcriptional regulator compare
BPHYT_RS16195 +1.0 2.3 carbon monoxide dehydrogenase subunit G compare
BPHYT_RS23370 +1.0 1.7 glycosyl transferase family 1 compare
BPHYT_RS25500 +1.0 1.4 hypothetical protein compare
BPHYT_RS25505 +1.0 3.9 RNA polymerase sigma factor compare
BPHYT_RS26140 +1.0 2.4 acyl-CoA dehydrogenase compare
BPHYT_RS02600 +1.0 2.0 glutaredoxin compare
BPHYT_RS26890 +1.0 2.8 LysR family transcriptional regulator compare
BPHYT_RS08410 +1.0 0.9 dehydrogenase compare
BPHYT_RS25020 +1.0 1.7 phospholipid-binding protein compare
BPHYT_RS11970 +1.0 1.2 cupin compare
BPHYT_RS12690 +0.9 2.5 hypothetical protein compare
BPHYT_RS04830 +0.9 1.8 hypothetical protein compare
BPHYT_RS27085 +0.9 1.7 alkylhydroperoxidase compare
BPHYT_RS34665 +0.9 2.3 hypothetical protein compare
BPHYT_RS24945 +0.9 1.6 alkylhydroperoxidase compare
BPHYT_RS03090 +0.9 1.2 hypothetical protein compare
BPHYT_RS29085 +0.9 1.1 LysR family transcriptional regulator compare
BPHYT_RS11655 +0.9 1.9 chromosome partitioning protein ParB compare
BPHYT_RS14135 +0.9 2.5 phosphate transporter permease subunit PtsA compare
BPHYT_RS33010 +0.9 2.7 hypothetical protein compare
BPHYT_RS01095 +0.9 1.1 hypothetical protein compare
BPHYT_RS11810 +0.9 0.9 LysR family transcriptional regulator compare
BPHYT_RS11900 +0.9 1.8 LysR family transcriptional regulator compare
BPHYT_RS14740 +0.9 5.0 threonine-phosphate decarboxylase compare
BPHYT_RS23325 +0.9 1.5 ribonuclease compare
BPHYT_RS29500 +0.9 1.7 hypothetical protein compare
BPHYT_RS35800 +0.9 1.3 TetR family transcriptional regulator compare
BPHYT_RS09440 +0.9 2.9 glycerate kinase compare
BPHYT_RS29675 +0.9 2.1 flagellar motor protein MotB compare
BPHYT_RS25035 +0.9 1.8 long-chain fatty acid--CoA ligase compare
BPHYT_RS07425 +0.9 1.3 hypothetical protein compare
BPHYT_RS27195 +0.9 2.2 LacI family transcriptional regulator compare
BPHYT_RS00380 +0.9 1.8 3-octaprenyl-4-hydroxybenzoate carboxy-lyase compare
BPHYT_RS31320 +0.9 1.5 hypothetical protein compare
BPHYT_RS06725 +0.9 1.7 MaoC family dehydratase compare
BPHYT_RS08150 +0.9 0.8 membrane protein compare
BPHYT_RS31935 +0.9 1.0 hypothetical protein compare
BPHYT_RS25135 +0.8 1.7 hypothetical protein compare
BPHYT_RS02150 +0.8 2.1 biotin synthase compare
BPHYT_RS07860 +0.8 1.2 benzoate 1,2-dioxygenase subunit beta compare
BPHYT_RS27660 +0.8 0.9 hypothetical protein compare
BPHYT_RS31630 +0.8 1.9 hypothetical protein compare
BPHYT_RS17725 +0.8 3.4 BolA family transcriptional regulator compare
BPHYT_RS17545 +0.8 2.9 cold-shock protein compare
BPHYT_RS26960 +0.8 2.1 LysR family transcriptional regulator compare
BPHYT_RS24220 +0.8 1.8 alpha/beta hydrolase compare
BPHYT_RS08190 +0.8 0.9 type II secretion system protein compare
BPHYT_RS13320 +0.8 0.8 allantoate amidohydrolase compare
BPHYT_RS06105 +0.8 1.0 hypothetical protein compare
BPHYT_RS07040 +0.8 1.3 asparaginase compare
BPHYT_RS30425 +0.8 1.1 LysR family transcriptional regulator compare
BPHYT_RS19920 +0.8 1.0 peptidyl-prolyl cis-trans isomerase compare
BPHYT_RS33680 +0.8 1.8 phosphoesterase compare
BPHYT_RS05235 +0.8 1.0 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase compare
BPHYT_RS05390 +0.8 1.5 isochorismatase compare
BPHYT_RS11260 +0.8 1.6 LysR family transcriptional regulator compare
BPHYT_RS23035 +0.8 1.5 hypothetical protein compare
BPHYT_RS02660 +0.8 0.8 membrane protein compare
BPHYT_RS34785 +0.8 4.2 hypothetical protein compare
BPHYT_RS05320 +0.8 0.9 beta-lactamase compare
BPHYT_RS33965 +0.8 0.8 methylcitrate synthase compare
BPHYT_RS31825 +0.8 2.2 integrase compare
BPHYT_RS24095 +0.8 2.4 membrane protein compare
BPHYT_RS34150 +0.8 2.4 Asp/Glu/hydantoin racemase compare
BPHYT_RS07110 +0.8 1.4 LysR family transcriptional regulator compare
BPHYT_RS33385 +0.8 0.7 major facilitator superfamily protein compare
BPHYT_RS07430 +0.8 1.9 LuxR family transcriptional regulator compare
BPHYT_RS28485 +0.8 1.1 GntR family transcriptional regulator compare
BPHYT_RS27720 +0.8 1.0 hypothetical protein compare
BPHYT_RS34530 +0.8 1.6 LysR family transcriptional regulator compare
BPHYT_RS07820 +0.8 3.0 hypothetical protein compare
BPHYT_RS23460 +0.8 0.8 AraC family transcriptional regulator compare
BPHYT_RS07265 +0.8 2.1 3-hydroxyanthranilate 3,4-dioxygenase compare
BPHYT_RS13420 +0.8 3.2 hypothetical protein compare
BPHYT_RS30865 +0.8 1.6 sugar ABC transporter ATP-binding protein compare
BPHYT_RS06985 +0.8 1.9 fumarate hydratase compare
BPHYT_RS24305 +0.8 1.7 glutathione S-transferase compare
BPHYT_RS31685 +0.8 1.4 D-isomer specific 2-hydroxyacid dehydrogenase compare
BPHYT_RS24040 +0.8 1.4 amino acid ABC transporter compare
BPHYT_RS14790 +0.8 3.1 D-amino acid dehydrogenase compare
BPHYT_RS16505 +0.8 2.1 HAD family hydrolase compare
BPHYT_RS18740 +0.8 2.4 acyl-CoA dehydrogenase compare
BPHYT_RS32915 +0.8 2.7 LysR family transcriptional regulator compare
BPHYT_RS20025 +0.8 0.6 crotonase compare
BPHYT_RS31030 +0.8 1.7 tyrosine protein kinase compare
BPHYT_RS08885 +0.8 3.2 inorganic phosphate transporter compare
BPHYT_RS17765 +0.8 2.6 toluene ABC transporter ATP-binding protein compare
BPHYT_RS21790 +0.8 2.1 hypothetical protein compare
BPHYT_RS03215 +0.8 1.1 TetR family transcriptional regulator compare
BPHYT_RS19715 +0.7 1.1 ATPase compare
BPHYT_RS20885 +0.7 2.0 nuclear protein SET compare
BPHYT_RS33795 +0.7 3.5 4-alpha-glucanotransferase compare
BPHYT_RS24925 +0.7 1.0 cytochrome O ubiquinol oxidase compare
BPHYT_RS17590 +0.7 2.6 hypothetical protein compare
BPHYT_RS22150 +0.7 3.3 DEAD/DEAH box helicase compare
BPHYT_RS27875 +0.7 1.9 CreA family protein compare
BPHYT_RS34230 +0.7 2.0 L-fuconate dehydratase; L-rhamnonate dehydratase (EC 4.2.1.68; EC 4.2.1.90) (from data) compare
BPHYT_RS29015 +0.7 0.9 RND transporter compare
BPHYT_RS32360 +0.7 1.1 spermidine/putrescine ABC transporter ATPase compare
BPHYT_RS09040 +0.7 1.7 MerR family transcriptional regulator compare
BPHYT_RS16510 +0.7 2.2 3,4-Dihydroxy-2-butanone 4-phosphate synthase compare
BPHYT_RS08395 +0.7 1.9 DSBA oxidoreductase compare
BPHYT_RS27520 +0.7 1.7 membrane protein compare
BPHYT_RS34275 +0.7 1.5 peptide chain release factor 3 compare
BPHYT_RS23355 +0.7 2.4 membrane protein compare
BPHYT_RS11335 +0.7 2.7 hypothetical protein compare
BPHYT_RS02520 +0.7 2.9 Fis family transcriptional regulator compare
BPHYT_RS10400 +0.7 0.7 taurine ABC transporter permease compare
BPHYT_RS27570 +0.7 1.0 universal stress protein UspA compare
BPHYT_RS02220 +0.7 2.0 butyryl-CoA dehydrogenase compare
BPHYT_RS21200 +0.7 1.9 hypothetical protein compare
BPHYT_RS33125 +0.7 1.4 hypothetical protein compare
BPHYT_RS27490 +0.7 1.9 porin compare
BPHYT_RS10555 +0.7 2.2 integral membrane sensor hybrid histidine kinase compare
BPHYT_RS21585 +0.7 1.4 short-chain dehydrogenase compare
BPHYT_RS36320 +0.7 1.3 type IV secretion system family protein compare
BPHYT_RS27950 +0.7 1.5 dihydroxyacetone kinase compare
BPHYT_RS20355 +0.7 0.8 ABC transporter substrate-binding protein compare
BPHYT_RS26570 +0.7 0.7 5'-nucleotidase compare
BPHYT_RS33115 +0.7 0.8 small mechanosensitive ion channel protein MscS compare
BPHYT_RS29865 +0.7 1.0 sugar transferase compare
BPHYT_RS02480 +0.7 0.9 alkaline phosphatase compare
BPHYT_RS05395 +0.7 0.9 hypothetical protein compare
BPHYT_RS35615 +0.7 1.5 hypothetical protein compare
BPHYT_RS21650 +0.7 1.5 cobalamin synthesis protein P47K compare
BPHYT_RS01875 +0.7 1.6 carboxymethylenebutenolidase compare
BPHYT_RS34185 +0.7 2.3 cold-shock protein compare
BPHYT_RS09580 +0.7 1.2 2-aminoadipate aminotransferase compare
BPHYT_RS03440 +0.7 1.4 polyisoprenoid-binding protein compare
BPHYT_RS14950 +0.7 1.8 hypothetical protein compare
BPHYT_RS14130 +0.7 2.6 phosphate ABC transporter ATP-binding protein compare
BPHYT_RS21925 +0.7 1.7 formimidoylglutamase compare
BPHYT_RS26670 +0.7 1.1 Cobalt-precorrin-5B C(1)-methyltransferase compare
BPHYT_RS10480 +0.7 2.2 LPS biosynthesis protein compare
BPHYT_RS24360 +0.7 1.7 potassium transporter TrkA compare
BPHYT_RS28785 +0.7 1.3 acetyltransferase compare
BPHYT_RS01170 +0.7 1.2 hypothetical protein compare
BPHYT_RS07375 +0.7 2.3 membrane protein compare


Specific Phenotypes

For 6 genes in this experiment

For motility Agar in Burkholderia phytofirmans PsJN

For motility Agar across organisms