Experiment set2IT088 for Burkholderia phytofirmans PsJN
inner cut, LB soft agar motility assay
Group: motilityMedia: LB + Agar (3 g/L)
Culturing: BFirm_ML3, Agar plate, Aerobic, at 30 (C), shaken=0 rpm, (Solid)
By: Mark on 6/2/2015
Media components: 10 g/L Tryptone, 5 g/L Yeast Extract, 5 g/L Sodium Chloride
Specific Phenotypes
For 6 genes in this experiment
For motility Agar in Burkholderia phytofirmans PsJN
For motility Agar across organisms
SEED Subsystems
| Subsystem | #Specific |
|---|---|
| Flagellum | 3 |
| Flagellar motility | 2 |
Metabolic Maps
Color code by fitness: see overview map or list of maps.
Maps containing gene(s) with specific phenotypes:
MetaCyc Pathways
Pathways that contain genes with specific phenotypes:
| Pathway | #Steps | #Present | #Specific |
|---|---|---|---|
| fatty acid biosynthesis initiation (type II) | 3 | 3 | 1 |
| superpathway of fatty acid biosynthesis initiation | 5 | 4 | 1 |
| superpathway of fatty acid biosynthesis I (E. coli) | 16 | 14 | 1 |
| streptorubin B biosynthesis | 34 | 20 | 1 |
| superpathway of fatty acid biosynthesis II (plant) | 43 | 38 | 1 |
| superpathway of fatty acids biosynthesis (E. coli) | 53 | 50 | 1 |