Experiment set2IT087 for Rhodanobacter denitrificans FW104-10B01

Compare to:

R2A with Sodium m-arsenite 0.0390625 mM

200 most important genes:

  gene name fitness t score description  
LRK54_RS01395 -5.2 -3.6 arsenate reductase ArsC compare
LRK54_RS01390 -4.8 -13.0 ACR3 family arsenite efflux transporter conserved
LRK54_RS06885 -3.7 -3.6 rhodanese-like domain-containing protein compare
LRK54_RS11565 -3.6 -4.3 anthranilate phosphoribosyltransferase compare
LRK54_RS00440 -3.5 -5.3 high frequency lysogenization protein HflD compare
LRK54_RS04585 -3.5 -3.4 muramoyltetrapeptide carboxypeptidase compare
LRK54_RS17505 -3.5 -3.4 preprotein translocase subunit SecG compare
LRK54_RS14695 -3.5 -12.4 rhomboid family intramembrane serine protease compare
LRK54_RS12860 -3.4 -2.4 RNase adapter RapZ compare
LRK54_RS02895 -3.4 -8.0 rhomboid family intramembrane serine protease compare
LRK54_RS06685 -3.4 -11.1 TolC family outer membrane protein compare
LRK54_RS01680 -3.4 -7.2 tryptophan synthase, alpha subunit (EC 4.2.1.20) (from data) compare
LRK54_RS00620 -3.3 -6.8 FtsH protease activity modulator HflK compare
LRK54_RS14590 -3.3 -5.9 N-acetylmuramoyl-L-alanine amidase compare
LRK54_RS05775 -3.3 -9.9 pyruvate kinase compare
LRK54_RS00345 -3.2 -4.9 TraB/GumN family protein compare
LRK54_RS14825 -3.2 -4.9 protease HtpX compare
LRK54_RS12945 -3.1 -6.4 phosphoribosylformylglycinamidine cyclo-ligase compare
LRK54_RS02445 -3.1 -4.2 membrane protein insertion efficiency factor YidD compare
LRK54_RS06755 -3.1 -18.7 LTA synthase family protein compare
LRK54_RS00615 -3.1 -4.2 protease modulator HflC compare
LRK54_RS04625 -3.1 -13.0 serine hydroxymethyltransferase compare
LRK54_RS04720 -3.1 -6.8 phosphoribosylformylglycinamidine synthase compare
LRK54_RS05785 -3.1 -6.2 type I glyceraldehyde-3-phosphate dehydrogenase compare
LRK54_RS05740 -3.0 -4.2 phosphoglycerate kinase compare
LRK54_RS02335 -3.0 -9.3 FUSC family protein compare
LRK54_RS09805 -3.0 -4.6 2,3-diphosphoglycerate-dependent phosphoglycerate mutase compare
LRK54_RS12295 -3.0 -2.9 symmetrical bis(5'-nucleosyl)-tetraphosphatase compare
LRK54_RS12865 -3.0 -8.4 HPr(Ser) kinase/phosphatase compare
LRK54_RS04350 -3.0 -4.5 phosphatidylcholine/phosphatidylserine synthase compare
LRK54_RS16940 -2.9 -3.5 RNA polymerase sigma factor RpoE compare
LRK54_RS03290 -2.9 -2.0 RIP metalloprotease RseP compare
LRK54_RS06470 -2.9 -10.4 carboxy terminal-processing peptidase compare
LRK54_RS00675 -2.9 -9.4 bifunctional 2-methylcitrate dehydratase/aconitate hydratase compare
LRK54_RS16660 -2.9 -8.8 VTT domain-containing protein compare
LRK54_RS11170 -2.9 -3.9 NADP-dependent malic enzyme compare
LRK54_RS13760 -2.8 -8.5 trypsin-like peptidase domain-containing protein compare
LRK54_RS00690 -2.8 -11.1 2-methylcitrate synthase compare
LRK54_RS05980 -2.8 -2.0 ATP-binding protein compare
LRK54_RS10065 -2.8 -3.8 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase compare
LRK54_RS05415 -2.8 -7.1 TetR/AcrR family transcriptional regulator compare
LRK54_RS16615 -2.7 -1.9 phosphopyruvate hydratase compare
LRK54_RS18050 -2.7 -11.1 lipopolysaccharide assembly protein LapB compare
LRK54_RS05985 -2.7 -1.9 response regulator transcription factor compare
LRK54_RS02090 -2.7 -15.3 NAD-glutamate dehydrogenase compare
LRK54_RS11975 -2.7 -6.5 SLC13 family permease compare
LRK54_RS03125 -2.7 -1.8 preprotein translocase subunit YajC compare
LRK54_RS11570 -2.7 -5.1 indole-3-glycerol phosphate synthase TrpC compare
LRK54_RS11290 -2.7 -1.8 dihydrolipoyllysine-residue acetyltransferase compare
LRK54_RS00670 -2.6 -3.6 OmpA family protein compare
LRK54_RS06675 -2.6 -8.8 TetR/AcrR family transcriptional regulator compare
LRK54_RS05495 -2.6 -6.5 met regulon transcriptional regulator MetJ compare
LRK54_RS03710 -2.6 -8.6 tetratricopeptide repeat protein compare
LRK54_RS05610 -2.6 -9.8 GtrA family protein compare
LRK54_RS04050 -2.6 -9.0 glycoside hydrolase compare
LRK54_RS05650 -2.5 -4.5 ABC transporter ATP-binding protein compare
LRK54_RS16755 -2.5 -1.7 SurA N-terminal domain-containing protein compare
LRK54_RS05655 -2.5 -3.0 ABC transporter permease compare
LRK54_RS10150 -2.5 -2.4 DNA topoisomerase I compare
LRK54_RS01685 -2.5 -12.0 tryptophan synthase subunit beta compare
LRK54_RS03110 -2.5 -10.0 nucleotidyltransferase family protein compare
LRK54_RS10885 -2.5 -14.5 glucokinase compare
LRK54_RS02460 -2.5 -10.0 phosphoglycolate phosphatase compare
LRK54_RS01585 -2.4 -8.0 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
LRK54_RS11385 -2.4 -5.8 co-chaperone DjlA compare
LRK54_RS06785 -2.4 -1.7 protein-disulfide reductase DsbD compare
LRK54_RS02440 -2.4 -2.3 RNA polymerase-binding protein DksA compare
LRK54_RS00680 -2.4 -10.4 TerC family protein compare
LRK54_RS12855 -2.4 -5.7 PTS fructose transporter subunit IIA compare
LRK54_RS02325 -2.4 -3.2 SDR family oxidoreductase compare
LRK54_RS12670 -2.4 -9.3 glycosyltransferase compare
LRK54_RS17270 -2.3 -3.5 DNA translocase FtsK compare
LRK54_RS12595 -2.3 -5.1 (2Fe-2S)-binding protein compare
LRK54_RS11175 -2.3 -8.7 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
LRK54_RS04100 -2.3 -1.8 ATP-binding cassette domain-containing protein compare
LRK54_RS13830 -2.3 -9.4 SDR family NAD(P)-dependent oxidoreductase compare
LRK54_RS01580 -2.2 -7.5 imidazole glycerol phosphate synthase subunit HisF compare
LRK54_RS15035 -2.2 -6.1 M48 family metalloprotease compare
LRK54_RS12190 -2.1 -7.4 16S rRNA (cytidine(1402)-2'-O)-methyltransferase compare
LRK54_RS00320 -2.1 -4.0 phosphoglycerate mutase compare
LRK54_RS08585 -2.1 -17.0 RimK family alpha-L-glutamate ligase compare
LRK54_RS03405 -2.1 -7.7 ribonuclease G compare
LRK54_RS02535 -2.1 -5.4 50S ribosomal protein L9 compare
LRK54_RS05200 -2.0 -3.8 hypothetical protein compare
LRK54_RS06475 -2.0 -8.5 lipoyl synthase compare
LRK54_RS11375 -2.0 -8.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
LRK54_RS10185 -2.0 -15.5 RDD family protein compare
LRK54_RS12300 -2.0 -5.7 Co2+/Mg2+ efflux protein ApaG compare
LRK54_RS02855 -2.0 -6.0 type I restriction-modification system subunit M compare
LRK54_RS00695 -2.0 -4.9 methylisocitrate lyase compare
LRK54_RS06875 -2.0 -1.6 YiiD C-terminal domain-containing protein compare
LRK54_RS15765 -2.0 -2.0 hypothetical protein compare
LRK54_RS00815 -2.0 -6.2 pseudouridine synthase compare
LRK54_RS01410 -1.9 -13.7 ABC transporter ATP-binding protein/permease compare
LRK54_RS07085 -1.9 -15.0 heme o synthase compare
LRK54_RS04140 -1.9 -6.4 inositol-phosphate phosphatase compare
LRK54_RS03895 -1.9 -12.1 lipopolysaccharide biosynthesis protein compare
LRK54_RS12305 -1.9 -10.6 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA compare
LRK54_RS10950 -1.9 -11.4 S41 family peptidase compare
LRK54_RS16810 -1.9 -1.6 hypothetical protein compare
LRK54_RS01590 -1.9 -9.1 imidazole glycerol phosphate synthase subunit HisH compare
LRK54_RS04255 -1.9 -9.1 type IV pilus twitching motility protein PilT compare
LRK54_RS02275 -1.9 -5.1 enoyl-CoA hydratase-related protein compare
LRK54_RS12460 -1.9 -2.8 hypothetical protein compare
LRK54_RS00805 -1.9 -3.3 segregation/condensation protein A compare
LRK54_RS04450 -1.9 -6.2 efflux RND transporter periplasmic adaptor subunit compare
LRK54_RS16730 -1.8 -2.2 ATP-dependent Clp protease ATP-binding subunit ClpX compare
LRK54_RS17905 -1.8 -3.2 NfuA family Fe-S biogenesis protein compare
LRK54_RS09945 -1.8 -5.9 class I SAM-dependent methyltransferase compare
LRK54_RS00395 -1.8 -3.9 prephenate dehydratase compare
LRK54_RS06610 -1.8 -12.3 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
LRK54_RS00085 -1.7 -2.0 tetratricopeptide repeat protein compare
LRK54_RS01400 -1.7 -3.9 arsenical resistance protein ArsH conserved
LRK54_RS00305 -1.7 -10.0 asparagine synthase B compare
LRK54_RS05615 -1.7 -11.1 hypothetical protein compare
LRK54_RS07310 -1.7 -9.5 pteridine reductase compare
LRK54_RS05660 -1.7 -9.5 PLP-dependent aspartate aminotransferase family protein compare
LRK54_RS03675 -1.7 -2.5 redox-regulated ATPase YchF compare
LRK54_RS16930 -1.7 -9.4 hypothetical protein compare
LRK54_RS10355 -1.7 -3.1 threonine synthase compare
LRK54_RS16875 -1.7 -12.5 kinase/pyrophosphorylase compare
LRK54_RS02185 -1.6 -4.3 exodeoxyribonuclease V subunit alpha compare
LRK54_RS10855 -1.6 -4.4 protein-export chaperone SecB compare
LRK54_RS08930 -1.6 -5.1 XRE family transcriptional regulator compare
LRK54_RS16720 -1.6 -6.2 trigger factor compare
LRK54_RS11560 -1.6 -4.1 aminodeoxychorismate/anthranilate synthase component II compare
LRK54_RS16740 -1.6 -3.2 HU family DNA-binding protein compare
LRK54_RS16655 -1.6 -2.8 protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
LRK54_RS02815 -1.6 -2.2 hypothetical protein compare
LRK54_RS06495 -1.6 -10.8 septal ring lytic transglycosylase RlpA family protein compare
LRK54_RS12590 -1.6 -10.7 molybdopterin-dependent oxidoreductase compare
LRK54_RS05670 -1.6 -5.6 glucose-1-phosphate thymidylyltransferase RfbA compare
LRK54_RS16050 -1.6 -1.5 tetratricopeptide repeat protein compare
LRK54_RS11765 -1.6 -8.5 lipid asymmetry maintenance ABC transporter permease subunit MlaE compare
LRK54_RS02870 -1.6 -5.4 DUF502 domain-containing protein compare
LRK54_RS05530 -1.6 -7.1 electron transfer flavoprotein-ubiquinone oxidoreductase compare
LRK54_RS13910 -1.6 -4.0 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabA compare
LRK54_RS12830 -1.6 -4.9 YeiH family protein compare
LRK54_RS07735 -1.6 -8.0 metalloregulator ArsR/SmtB family transcription factor compare
LRK54_RS18055 -1.5 -4.6 glycosyltransferase family 4 protein compare
LRK54_RS05735 -1.5 -8.8 maleylacetoacetate isomerase compare
LRK54_RS02495 -1.5 -5.6 50S ribosomal protein L19 compare
LRK54_RS11285 -1.5 -4.5 ABC transporter ATP-binding protein compare
LRK54_RS14670 -1.5 -2.1 NrsF family protein compare
LRK54_RS00080 -1.5 -7.9 helix-turn-helix domain-containing protein compare
LRK54_RS04710 -1.5 -3.8 glycosyltransferase family 2 protein compare
LRK54_RS16865 -1.5 -7.2 protein phosphatase 2C domain-containing protein compare
LRK54_RS03200 -1.5 -6.5 integration host factor subunit alpha compare
LRK54_RS16600 -1.5 -8.2 aminopeptidase P family protein compare
LRK54_RS08760 -1.5 -3.6 transaldolase compare
LRK54_RS18060 -1.4 -5.1 polysaccharide biosynthesis protein compare
LRK54_RS16955 -1.4 -9.3 translation elongation factor 4 compare
LRK54_RS02380 -1.4 -5.2 argininosuccinate lyase compare
LRK54_RS15020 -1.4 -10.6 polyphosphate kinase 1 compare
LRK54_RS16935 -1.4 -10.4 bifunctional diguanylate cyclase/phosphodiesterase compare
LRK54_RS01280 -1.4 -2.3 MBL fold metallo-hydrolase compare
LRK54_RS16665 -1.4 -8.1 peptidoglycan DD-metalloendopeptidase family protein compare
LRK54_RS03925 -1.4 -8.8 glycosyltransferase family 4 protein compare
LRK54_RS12625 -1.4 -7.3 bifunctional aspartate kinase/diaminopimelate decarboxylase compare
LRK54_RS09000 -1.4 -8.2 HAMP domain-containing histidine kinase compare
LRK54_RS05640 -1.4 -7.6 GDP-mannose 4,6-dehydratase compare
LRK54_RS05630 -1.4 -5.8 D-sedoheptulose 7-phosphate isomerase compare
LRK54_RS07095 -1.4 -6.8 hypothetical protein compare
LRK54_RS14465 -1.3 -5.1 septum site-determining protein MinC compare
LRK54_RS16110 -1.3 -7.4 polyhydroxyalkanoate synthesis repressor PhaR compare
LRK54_RS06795 -1.3 -5.1 type II 3-dehydroquinate dehydratase compare
LRK54_RS06420 -1.3 -2.2 hypothetical protein compare
LRK54_RS05665 -1.3 -4.2 dTDP-glucose 4,6-dehydratase compare
LRK54_RS07215 -1.3 -5.4 cytochrome c4 compare
LRK54_RS10925 -1.3 -2.2 cell division ATP-binding protein FtsE compare
LRK54_RS14460 -1.3 -7.1 septum site-determining protein MinD compare
LRK54_RS07020 -1.3 -1.9 ABC transporter permease compare
LRK54_RS15935 -1.3 -7.6 rRNA pseudouridine synthase compare
LRK54_RS00775 -1.3 -7.4 translational GTPase TypA compare
LRK54_RS16650 -1.3 -5.8 5'/3'-nucleotidase SurE compare
LRK54_RS07090 -1.3 -9.8 COX15/CtaA family protein compare
LRK54_RS16735 -1.3 -9.5 endopeptidase La compare
LRK54_RS05535 -1.3 -5.5 glycosyltransferase family 2 protein compare
LRK54_RS07120 -1.3 -10.6 cytochrome c oxidase subunit I compare
LRK54_RS06480 -1.3 -7.0 lipoyl(octanoyl) transferase LipB compare
LRK54_RS15265 -1.3 -6.5 acetyl-CoA C-acyltransferase compare
LRK54_RS03105 -1.2 -8.0 phosphotransferase compare
LRK54_RS04895 -1.2 -4.7 tol-pal system-associated acyl-CoA thioesterase compare
LRK54_RS01340 -1.2 -8.4 amidophosphoribosyltransferase compare
LRK54_RS05710 -1.2 -8.5 pyridoxal-phosphate dependent enzyme compare
LRK54_RS05550 -1.2 -2.2 FAD-binding protein compare
LRK54_RS11785 -1.2 -9.3 VacJ family lipoprotein compare
LRK54_RS06820 -1.2 -2.5 Fis family transcriptional regulator compare
LRK54_RS06425 -1.2 -2.2 ribonucleoside-diphosphate reductase compare
LRK54_RS11770 -1.2 -9.2 outer membrane lipid asymmetry maintenance protein MlaD compare
LRK54_RS11415 -1.2 -8.2 anthranilate synthase component I compare
LRK54_RS05645 -1.2 -9.0 glycosyltransferase compare
LRK54_RS15165 -1.2 -3.3 enoyl-CoA hydratase-related protein compare
LRK54_RS16950 -1.2 -8.8 Do family serine endopeptidase compare
LRK54_RS07775 -1.1 -2.8 MarR family transcriptional regulator compare
LRK54_RS01285 -1.1 -4.1 3-deoxy-D-manno-octulosonic acid kinase compare
LRK54_RS05540 -1.1 -3.7 glycosyltransferase family 2 protein compare
LRK54_RS11230 -1.1 -1.3 universal stress protein compare
LRK54_RS00400 -1.1 -7.6 3-phosphoserine/phosphohydroxythreonine transaminase compare
LRK54_RS17160 -1.1 -1.7 Eco57I restriction-modification methylase domain-containing protein compare


Specific Phenotypes

For 2 genes in this experiment

For stress Sodium m-arsenite in Rhodanobacter denitrificans FW104-10B01

For stress Sodium m-arsenite across organisms