Experiment set2IT087 for Pseudomonas fluorescens FW300-N2C3

Compare to:

D-Trehalose dihydrate carbon source

200 most important genes:

  gene name fitness t score description  
AO356_21405 -6.3 -4.4 3-isopropylmalate dehydratase compare
AO356_12525 -6.1 -4.2 acetylglutamate kinase compare
AO356_08635 -5.4 -9.1 ATP phosphoribosyltransferase regulatory subunit compare
AO356_14435 -5.3 -6.3 anthranilate phosphoribosyltransferase compare
AO356_05215 -5.3 -8.1 glucokinase compare
AO356_05190 -5.3 -14.9 sugar ABC transporter permease compare
AO356_09815 -5.2 -6.2 imidazoleglycerol-phosphate dehydratase compare
AO356_18325 -5.1 -13.2 argininosuccinate synthase compare
AO356_09520 -5.1 -5.0 phosphoribosyl-AMP cyclohydrolase compare
AO356_21440 -5.0 -9.6 N-(5'-phosphoribosyl)anthranilate isomerase compare
AO356_05210 -5.0 -6.8 chemotaxis protein CheY compare
AO356_05180 -4.9 -7.5 sugar ABC transporter ATP-binding protein compare
AO356_09810 -4.9 -4.8 imidazole glycerol phosphate synthase subunit HisH compare
AO356_24205 -4.9 -18.5 Alpha,alpha-trehalase (EC 3.2.1.28) (from data) conserved
AO356_13085 -4.9 -10.9 N-acetylglutamate synthase compare
AO356_06965 -4.9 -8.2 histidinol dehydrogenase compare
AO356_09375 -4.9 -24.4 glutamate synthase compare
AO356_13405 -4.8 -11.1 methionine biosynthesis protein MetW compare
AO356_21415 -4.8 -11.7 3-isopropylmalate dehydrogenase compare
AO356_14420 -4.7 -15.1 anthranilate synthase compare
AO356_09370 -4.7 -13.9 glutamate synthase compare
AO356_16175 -4.7 -7.8 acetolactate synthase 3 regulatory subunit compare
AO356_04575 -4.6 -12.0 RNA polymerase subunit sigma compare
AO356_14440 -4.6 -5.4 indole-3-glycerol-phosphate synthase compare
AO356_15165 -4.5 -3.1 protein cII compare
AO356_05160 -4.5 -10.1 glucose-6-phosphate dehydrogenase compare
AO356_21400 -4.5 -6.3 isopropylmalate isomerase compare
AO356_16075 -4.5 -3.1 Fis family transcriptional regulator compare
AO356_12520 -4.5 -3.1 orotate phosphoribosyltransferase compare
AO356_13410 -4.5 -13.7 homoserine O-acetyltransferase compare
AO356_10915 -4.4 -10.6 tryptophan synthase subunit beta compare
AO356_11845 -4.4 -18.3 glycosyltransferase conserved
AO356_19045 -4.4 -12.1 chemotaxis protein CheY compare
AO356_05185 -4.4 -9.8 sugar ABC transporter permease compare
AO356_05205 -4.4 -11.0 histidine kinase compare
AO356_03350 -4.3 -7.8 glycosyl transferase compare
AO356_13250 -4.3 -10.8 dihydroxy-acid dehydratase compare
AO356_09800 -4.3 -5.9 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
AO356_11850 -4.3 -19.1 glycosyltransferase conserved
AO356_06970 -4.3 -6.6 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
AO356_10000 -4.3 -6.5 hypothetical protein compare
AO356_10910 -4.3 -10.7 tryptophan synthase subunit alpha compare
AO356_19090 -4.3 -4.1 phosphoribosylaminoimidazole synthetase compare
AO356_16170 -4.2 -11.5 acetolactate synthase 3 catalytic subunit compare
AO356_05195 -4.2 -11.7 sugar ABC transporter substrate-binding protein compare
AO356_03405 -4.2 -4.9 serine acetyltransferase compare
AO356_03365 -4.1 -6.2 UDP-N-acetylglucosamine 2-epimerase compare
AO356_21465 -4.1 -5.5 amidophosphoribosyltransferase compare
AO356_19795 -3.9 -2.7 glycerol-3-phosphate dehydrogenase compare
AO356_06550 -3.9 -10.5 2-isopropylmalate synthase compare
AO356_21470 -3.9 -6.5 O-succinylhomoserine sulfhydrylase compare
AO356_01750 -3.9 -2.7 ATP-dependent Clp protease proteolytic subunit compare
AO356_16180 -3.9 -13.6 ketol-acid reductoisomerase compare
AO356_13605 -3.9 -10.2 5,10-methylenetetrahydrofolate reductase compare
AO356_03360 -3.8 -5.1 hypothetical protein compare
AO356_02175 -3.7 -9.0 transaldolase compare
AO356_01745 -3.7 -4.4 ATP-dependent Clp protease ATP-binding subunit ClpX compare
AO356_19085 -3.7 -9.5 phosphoribosylglycinamide formyltransferase compare
AO356_22200 -3.7 -10.0 sirohydrochlorin ferrochelatase compare
AO356_00355 -3.7 -7.4 chemotaxis protein CheY compare
AO356_18275 -3.6 -14.0 ornithine carbamoyltransferase compare
AO356_07910 -3.6 -2.4 exodeoxyribonuclease V subunit alpha compare
AO356_03420 -3.5 -11.4 UDP-N-acetyl-D-glucosamine dehydrogenase compare
AO356_09795 -3.5 -2.4 imidazole glycerol phosphate synthase subunit HisF compare
AO356_06005 -3.5 -6.2 zinc metallopeptidase RseP compare
AO356_00555 -3.4 -10.3 sulfite reductase compare
AO356_00560 -3.3 -3.2 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
AO356_18020 -3.2 -4.8 ATP-dependent DNA helicase RuvA compare
AO356_07005 -3.1 -3.4 ABC transporter ATP-binding protein compare
AO356_17075 -3.1 -3.0 cytochrome C compare
AO356_03345 -3.1 -12.8 hypothetical protein compare
AO356_10005 -3.1 -8.9 branched-chain amino acid permease (azaleucine resistance) compare
AO356_01630 -3.0 -5.7 anti-sigma factor compare
AO356_24845 -3.0 -3.8 ATPase compare
AO356_10350 -3.0 -12.3 phosphoenolpyruvate-protein phosphotransferase compare
AO356_12780 -2.9 -5.9 argininosuccinate lyase compare
AO356_10300 -2.9 -3.5 3-phosphoglycerate dehydrogenase compare
AO356_03415 -2.9 -11.2 oxidoreductase compare
AO356_07915 -2.8 -3.8 exodeoxyribonuclease V subunit beta compare
AO356_03180 -2.8 -5.4 CysB family transcriptional regulator compare
AO356_16095 -2.7 -6.9 molecular chaperone DnaK compare
AO356_28595 -2.7 -2.5 transcriptional regulator compare
AO356_03355 -2.7 -6.1 hypothetical protein compare
AO356_11415 -2.7 -9.4 chemotaxis protein CheY compare
AO356_08870 -2.6 -9.3 polymerase compare
AO356_18025 -2.6 -3.8 ATP-dependent DNA helicase RuvB compare
AO356_03400 -2.6 -7.9 aminotransferase DegT compare
AO356_02190 -2.6 -8.0 hypothetical protein compare
AO356_00880 -2.5 -3.1 integration host factor subunit alpha compare
AO356_11315 -2.5 -2.4 shikimate dehydrogenase compare
AO356_07055 -2.5 -2.6 phosphocarrier protein HPr compare
AO356_17520 -2.4 -2.8 phosphoribosylformylglycinamidine synthase compare
AO356_04560 -2.4 -3.2 serine peptidase compare
AO356_14430 -2.3 -6.3 anthranilate synthase compare
AO356_07480 -2.3 -3.4 carbamoyl phosphate synthase large subunit compare
AO356_19520 -2.3 -4.8 isochorismatase compare
AO356_12380 -2.2 -8.7 ATP-dependent DNA helicase RecG compare
AO356_11675 -2.2 -9.7 chromosome partitioning protein compare
AO356_11820 -2.1 -9.5 sugar ABC transporter ATP-binding protein conserved
AO356_09525 -2.1 -5.4 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
AO356_16655 -2.1 -8.3 2-alkenal reductase compare
AO356_24965 -2.1 -3.3 GntR family transcriptional regulator compare
AO356_20475 -2.1 -2.7 hypothetical protein compare
AO356_30345 -2.0 -6.2 IclR family transcriptional regulator compare
AO356_17065 -2.0 -2.3 ubiquinol-cytochrome c reductase iron-sulfur subunit compare
AO356_25750 -2.0 -2.9 GntR family transcriptional regulator compare
AO356_09995 -2.0 -8.8 LysR family transcriptional regulator compare
AO356_06995 -2.0 -6.5 outer membrane lipid asymmetry maintenance protein MlaD compare
AO356_06575 -1.9 -3.7 outer membrane protein assembly factor BamB compare
AO356_11025 -1.9 -5.1 transcriptional regulator PhoU compare
AO356_06385 -1.8 -4.4 recombinase XerD compare
AO356_01555 -1.8 -8.5 acyl-CoA dehydrogenase compare
AO356_29355 -1.8 -2.1 hypothetical protein compare
AO356_16665 -1.8 -11.1 sulfate adenylyltransferase compare
AO356_19555 -1.7 -3.7 hypothetical protein compare
AO356_17070 -1.7 -3.0 cytochrome B compare
AO356_27635 -1.7 -4.7 histidine kinase compare
AO356_20175 -1.7 -2.6 3-oxoacyl-ACP synthase compare
AO356_05670 -1.7 -3.2 recombinase RecA compare
AO356_03435 -1.6 -1.8 integration host factor subunit beta compare
AO356_11610 -1.6 -2.3 glycerol acyltransferase compare
AO356_24905 -1.6 -6.5 4-hydroxy-tetrahydrodipicolinate synthase compare
AO356_03375 -1.6 -2.2 ExsB family protein compare
AO356_11465 -1.6 -7.2 DNA polymerase I compare
AO356_07105 -1.6 -8.5 hypothetical protein compare
AO356_05995 -1.6 -2.6 hypothetical protein compare
AO356_27050 -1.6 -3.5 hypothetical protein compare
AO356_19050 -1.5 -3.0 cysteine synthase compare
AO356_11585 -1.5 -5.0 lipid A biosynthesis lauroyl acyltransferase compare
AO356_10015 -1.5 -10.9 protein BsmA compare
AO356_16050 -1.5 -3.3 glucose-6-phosphate isomerase compare
AO356_11680 -1.5 -2.8 chromosome partitioning protein ParB compare
AO356_16670 -1.4 -8.7 adenylylsulfate kinase compare
AO356_10160 -1.4 -8.9 ribosomal protein S6 modification protein compare
AO356_08735 -1.4 -7.5 phosphoserine phosphatase compare
AO356_20785 -1.4 -1.9 hypothetical protein compare
AO356_08660 -1.4 -7.0 tRNA dimethylallyltransferase compare
AO356_21125 -1.3 -4.3 cyclic peptide transporter compare
AO356_21285 -1.3 -7.1 histidine kinase compare
AO356_18730 -1.3 -5.9 arginine N-succinyltransferase compare
AO356_10330 -1.2 -8.6 threonine dehydratase compare
AO356_12485 -1.2 -4.0 DNA-directed RNA polymerase subunit omega compare
AO356_00875 -1.2 -3.3 MerR family transcriptional regulator compare
AO356_01255 -1.2 -7.0 alpha-1,4-glucan--maltose-1-phosphate maltosyltransferase compare
AO356_12725 -1.2 -4.0 recombinase XerC compare
AO356_18245 -1.2 -4.7 DeoR family transcriptional regulator compare
AO356_11825 -1.2 -4.5 ABC transporter compare
AO356_24485 -1.2 -2.9 SAM-dependent methyltransferase compare
AO356_20155 -1.1 -5.0 phosphate acyltransferase compare
AO356_07210 -1.1 -2.3 histidine kinase compare
AO356_03185 -1.1 -5.4 universal stress protein UspA compare
AO356_02325 -1.1 -2.0 3-ketoacyl-CoA thiolase compare
AO356_03620 -1.1 -2.9 cytochrome C compare
AO356_12895 -1.1 -9.2 polyphosphate kinase compare
AO356_12610 -1.1 -1.7 Fe-S oxidoreductase compare
AO356_16080 -1.1 -6.6 ATPase compare
AO356_06690 -1.1 -3.0 queuine tRNA-ribosyltransferase compare
AO356_11255 -1.1 -5.9 hypothetical protein compare
AO356_30430 -1.1 -3.2 hypothetical protein compare
AO356_07000 -1.1 -2.1 ABC transporter permease compare
AO356_01245 -1.1 -5.5 glycogen branching protein compare
AO356_03135 -1.1 -5.4 LysR family transcriptional regulator compare
AO356_09540 -1.0 -1.5 twin-arginine protein translocation system subunit TatC compare
AO356_03380 -1.0 -3.0 glycosyl amidation-associated protein WbuZ compare
AO356_17020 -1.0 -3.1 cytochrome D ubiquinol oxidase subunit III compare
AO356_27180 -1.0 -3.5 hypothetical protein compare
AO356_14355 -1.0 -6.7 aminoglycoside phosphotransferase compare
AO356_13320 -1.0 -2.0 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD compare
AO356_07920 -1.0 -3.6 exodeoxyribonuclease V subunit gamma compare
AO356_19080 -1.0 -6.6 dehydrogenase compare
AO356_04970 -1.0 -5.0 aspartate-semialdehyde dehydrogenase compare
AO356_12840 -1.0 -4.5 threonine transporter RhtB compare
AO356_26360 -1.0 -2.2 enoyl-CoA hydratase compare
AO356_00130 -1.0 -1.5 XRE family transcriptional regulator compare
AO356_18480 -1.0 -2.2 translation initiation factor 2 compare
AO356_16535 -1.0 -4.2 MerR family transcriptional regulator compare
AO356_08955 -1.0 -5.6 bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase compare
AO356_10445 -1.0 -1.6 serine protease compare
AO356_15815 -0.9 -1.7 gamma-glutamyl kinase compare
AO356_00430 -0.9 -3.8 twitching motility protein PilT compare
AO356_06990 -0.9 -3.3 toluene tolerance protein compare
AO356_15380 -0.9 -4.9 hypothetical protein compare
AO356_10345 -0.9 -2.1 RNA pyrophosphohydrolase compare
AO356_27645 -0.9 -3.5 chemotaxis protein CheR compare
AO356_09755 -0.9 -4.0 preprotein translocase subunit SecB compare
AO356_25110 -0.9 -2.0 protein DnrP compare
AO356_23420 -0.9 -4.4 carboxynorspermidine decarboxylase compare
AO356_11815 -0.9 -5.5 glycosyl transferase compare
AO356_09640 -0.9 -2.3 histidine utilization repressor compare
AO356_03885 -0.9 -5.7 beta-ketoacyl-ACP synthase compare
AO356_26040 -0.9 -1.3 hypothetical protein compare
AO356_15440 -0.9 -7.5 histidine kinase compare
AO356_20830 -0.9 -2.6 phosphoadenosine phosphosulfate reductase compare
AO356_07540 -0.9 -1.4 SsrA-binding protein compare
AO356_12020 -0.9 -6.0 pyruvate carboxylase subunit A compare
AO356_20520 -0.8 -1.2 oxidoreductase compare
AO356_27925 -0.8 -1.9 MarR family transcriptional regulator compare
AO356_09880 -0.8 -1.4 antitoxin compare
AO356_12990 -0.8 -4.5 5-formyltetrahydrofolate cyclo-ligase compare
AO356_28710 -0.8 -1.5 aldehyde dehydrogenase compare


Specific Phenotypes

For 17 genes in this experiment

For carbon source D-Trehalose dihydrate in Pseudomonas fluorescens FW300-N2C3

For carbon source D-Trehalose dihydrate across organisms