Experiment set2IT087 for Rahnella sp. WP5

Compare to:

Sucrose carbon source

200 most important genes:

  gene name fitness t score description  
EX31_RS03695 -6.4 -4.4 3-isopropylmalate dehydratase small subunit compare
EX31_RS14190 -5.9 -9.8 N-acetyl-gamma-glutamyl-phosphate reductase compare
EX31_RS20980 -5.4 -5.2 glutamate 5-kinase compare
EX31_RS04035 -5.3 -7.3 phosphoserine phosphatase compare
EX31_RS15005 -5.2 -16.7 dihydroxy-acid dehydratase compare
EX31_RS02690 -5.1 -3.5 pyrroline-5-carboxylate reductase compare
EX31_RS14180 -5.1 -14.7 argininosuccinate lyase compare
EX31_RS03935 -5.1 -9.7 threonine synthase compare
EX31_RS14215 -4.9 -20.3 cystathionine gamma-synthase compare
EX31_RS12515 -4.9 -24.9 glutamate synthase large subunit compare
EX31_RS14185 -4.9 -8.8 acetylglutamate kinase compare
EX31_RS15020 -4.9 -18.1 ketol-acid reductoisomerase compare
EX31_RS13275 -4.7 -13.8 diaminopimelate decarboxylase compare
EX31_RS03835 -4.7 -7.8 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit compare
EX31_RS03830 -4.7 -17.5 carbamoyl-phosphate synthase large subunit compare
EX31_RS12825 -4.6 -7.7 ornithine carbamoyltransferase compare
EX31_RS16860 -4.6 -19.4 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
EX31_RS14200 -4.6 -18.4 phosphoenolpyruvate carboxylase compare
EX31_RS20975 -4.6 -7.0 glutamate-5-semialdehyde dehydrogenase compare
EX31_RS03685 -4.5 -15.0 3-isopropylmalate dehydrogenase compare
EX31_RS13160 -4.5 -12.0 amino-acid N-acetyltransferase compare
EX31_RS03945 -4.4 -23.6 bifunctional aspartate kinase/homoserine dehydrogenase I compare
EX31_RS18530 -4.4 -13.0 leucine-responsive transcriptional regulator Lrp compare
EX31_RS03690 -4.4 -13.2 3-isopropylmalate dehydratase large subunit compare
EX31_RS11465 -4.4 -6.0 imidazole glycerol phosphate synthase subunit HisF compare
EX31_RS16855 -4.4 -15.4 phosphoribosylamine--glycine ligase compare
EX31_RS20175 -4.4 -9.7 cysteine synthase A compare
EX31_RS03940 -4.3 -12.0 homoserine kinase compare
EX31_RS23245 -4.3 -15.8 asparagine synthase B compare
EX31_RS13445 -4.3 -17.0 argininosuccinate synthase compare
EX31_RS22695 -4.2 -9.8 phosphoribosylformylglycinamidine cyclo-ligase compare
EX31_RS22750 -4.2 -2.9 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
EX31_RS12510 -4.2 -15.4 FAD-dependent oxidoreductase compare
EX31_RS21895 -4.2 -17.9 phosphoribosylformylglycinamidine synthase compare
EX31_RS12400 -4.2 -4.1 RNA polymerase factor sigma-54 compare
EX31_RS23415 -4.1 -7.8 citrate synthase compare
EX31_RS11735 -4.1 -9.0 homoserine O-succinyltransferase compare
EX31_RS15875 -4.1 -16.3 nitrogen regulation protein NR(II) compare
EX31_RS11450 -4.0 -4.8 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
EX31_RS09960 -4.0 -5.4 glutamine amidotransferase compare
EX31_RS09965 -4.0 -5.4 anthranilate phosphoribosyltransferase compare
EX31_RS21470 -3.9 -10.4 phosphoglycerate dehydrogenase compare
EX31_RS15880 -3.9 -10.8 nitrogen regulation protein NR(I) compare
EX31_RS07585 -3.9 -9.6 bifunctional chorismate mutase/prephenate dehydratase compare
EX31_RS14310 -3.9 -2.7 6-phosphofructokinase compare
EX31_RS07900 -3.8 -18.1 assimilatory sulfite reductase (NADPH) hemoprotein subunit compare
EX31_RS19570 -3.8 -14.3 amidophosphoribosyltransferase compare
EX31_RS11440 -3.8 -7.5 histidinol dehydrogenase compare
EX31_RS05785 -3.7 -5.0 superoxide dismutase [Mn] compare
EX31_RS24140 -3.7 -1.6 DUF2594 family protein compare
EX31_RS22620 -3.7 -8.5 5-(carboxyamino)imidazole ribonucleotide synthase compare
EX31_RS09890 -3.6 -10.1 HTH-type transcriptional regulator CysB compare
EX31_RS02520 -3.6 -4.2 sigma-54-dependent Fis family transcriptional regulator compare
EX31_RS20450 -3.6 -5.9 IMP dehydrogenase compare
EX31_RS02515 -3.6 -2.5 PAS domain-containing protein compare
EX31_RS09980 -3.5 -5.7 tryptophan synthase subunit alpha compare
EX31_RS15010 -3.5 -15.3 threonine ammonia-lyase, biosynthetic compare
EX31_RS03680 -3.5 -13.6 2-isopropylmalate synthase compare
EX31_RS09970 -3.5 -8.7 bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF compare
EX31_RS11455 -3.4 -5.1 imidazole glycerol phosphate synthase subunit HisH compare
EX31_RS11460 -3.4 -3.3 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
EX31_RS09955 -3.3 -7.8 anthranilate synthase component 1 compare
EX31_RS07870 -3.3 -10.9 adenylyl-sulfate kinase compare
EX31_RS18255 -3.3 -2.2 3-phosphoserine/phosphohydroxythreonine transaminase compare
EX31_RS24385 -3.3 -3.8 dihydroorotase compare
EX31_RS22625 -3.2 -3.7 5-(carboxyamino)imidazole ribonucleotide mutase compare
EX31_RS20190 -3.2 -2.2 PTS glucose transporter subunit IIA compare
EX31_RS07905 -3.2 -17.6 NADPH-dependent assimilatory sulfite reductase flavoprotein subunit compare
EX31_RS11445 -3.2 -8.8 histidinol-phosphate transaminase compare
EX31_RS07895 -3.2 -11.8 phosphoadenylyl-sulfate reductase compare
EX31_RS07590 -3.2 -2.2 bifunctional chorismate mutase/prephenate dehydrogenase compare
EX31_RS20185 -3.1 -7.1 phosphoenolpyruvate-protein phosphotransferase PtsI compare
EX31_RS02530 -3.1 -4.6 ABC transporter ATP-binding protein compare
EX31_RS08720 -3.1 -15.5 3'(2'),5'-bisphosphate nucleotidase CysQ compare
EX31_RS09975 -3.1 -9.0 tryptophan synthase subunit beta compare
EX31_RS11470 -3.1 -4.1 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
EX31_RS14500 -3.0 -11.0 orotate phosphoribosyltransferase compare
EX31_RS14340 -2.9 -2.0 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
EX31_RS18095 -2.9 -7.6 quinone-dependent dihydroorotate dehydrogenase compare
EX31_RS21850 -2.8 -3.2 pyridoxine 5'-phosphate synthase compare
EX31_RS03035 -2.8 -10.2 LysE family transporter compare
EX31_RS15870 -2.7 -3.1 glutamate--ammonia ligase compare
EX31_RS06060 -2.6 -5.9 phosphate ABC transporter permease PstA compare
EX31_RS12785 -2.6 -12.1 aspartate carbamoyltransferase compare
EX31_RS07880 -2.6 -16.2 sulfate adenylyltransferase subunit CysD compare
EX31_RS03775 -2.6 -4.9 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
EX31_RS09790 -2.6 -3.8 autoinducer 2 ABC transporter permease LsrD compare
EX31_RS23440 -2.6 -1.8 2-oxoglutarate dehydrogenase E1 component compare
EX31_RS20495 -2.6 -9.9 outer membrane protein assembly factor BamB compare
EX31_RS19610 -2.6 -8.8 4-phosphoerythronate dehydrogenase PdxB compare
EX31_RS07875 -2.6 -15.6 sulfate adenylyltransferase subunit CysN compare
EX31_RS11010 -2.6 -1.6 DgsA anti-repressor MtfA compare
EX31_RS20180 -2.5 -3.1 phosphocarrier protein Hpr compare
EX31_RS25365 -2.5 -1.7 50S ribosomal protein L31 compare
EX31_RS14205 -2.5 -12.5 methylenetetrahydrofolate reductase compare
EX31_RS13815 -2.5 -1.5 ribonuclease T compare
EX31_RS09855 -2.4 -4.4 orotidine-5'-phosphate decarboxylase compare
EX31_RS07955 -2.4 -15.6 GTP diphosphokinase compare
EX31_RS18540 -2.4 -1.6 cysteine/glutathione ABC transporter permease/ATP-binding protein CydD compare
EX31_RS22245 -2.4 -4.2 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
EX31_RS03030 -2.4 -10.3 helix-turn-helix transcriptional regulator compare
EX31_RS03480 -2.4 -1.6 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
EX31_RS00430 -2.3 -5.8 PTS sucrose transporter subunit IIBC compare
EX31_RS14335 -2.3 -3.1 serine O-acetyltransferase compare
EX31_RS03250 -2.2 -8.7 RNA polymerase-binding protein DksA compare
EX31_RS25340 -2.2 -5.3 hypothetical protein compare
EX31_RS18525 -2.2 -2.9 DNA translocase FtsK compare
EX31_RS04630 -2.2 -12.2 aspartate aminotransferase family protein compare
EX31_RS22250 -2.2 -4.6 ATP-dependent protease ATP-binding subunit ClpX compare
EX31_RS11110 -2.1 -2.0 RidA family protein compare
EX31_RS03040 -2.1 -8.4 hypothetical protein compare
EX31_RS08130 -2.1 -2.7 accessory factor UbiK family protein compare
EX31_RS21190 -2.1 -4.0 ribonuclease HI compare
EX31_RS07595 -2.0 -6.5 3-deoxy-7-phosphoheptulonate synthase compare
EX31_RS04390 -2.0 -1.9 DNA polymerase III subunit chi compare
EX31_RS09580 -2.0 -1.7 flagellar motor switch protein FliN compare
EX31_RS03220 -1.9 -2.2 Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC compare
EX31_RS06945 -1.9 -3.4 helix-turn-helix domain-containing protein compare
EX31_RS18445 -1.9 -1.9 DUF2732 domain-containing protein compare
EX31_RS06000 -1.9 -5.0 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
EX31_RS10955 -1.9 -3.1 AI-2E family transporter compare
EX31_RS12875 -1.9 -2.7 D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase compare
EX31_RS08150 -1.9 -10.3 inorganic triphosphatase compare
EX31_RS10620 -1.8 -2.6 RidA family protein compare
EX31_RS08745 -1.8 -1.6 50S ribosomal protein L9 compare
EX31_RS03400 -1.8 -5.5 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase compare
EX31_RS01970 -1.8 -1.5 hypothetical protein compare
EX31_RS07475 -1.7 -1.5 hypothetical protein compare
EX31_RS10115 -1.7 -8.5 formyltetrahydrofolate deformylase compare
EX31_RS23990 -1.7 -1.3 SDR family NAD(P)-dependent oxidoreductase compare
EX31_RS00010 -1.6 -1.3 type II toxin-antitoxin system HipA family toxin compare
EX31_RS11435 -1.6 -4.4 ATP phosphoribosyltransferase compare
EX31_RS04775 -1.6 -5.5 Hsp33 family molecular chaperone HslO compare
EX31_RS14620 -1.6 -1.8 SCP2 domain-containing protein compare
EX31_RS00425 -1.6 -5.9 sucrose-6-phosphate hydrolase conserved
EX31_RS19600 -1.5 -6.3 tRNA pseudouridine(38-40) synthase TruA compare
EX31_RS09470 -1.5 -3.8 flagella biosynthesis regulatory protein FliT compare
EX31_RS16845 -1.5 -2.5 DNA-binding protein HU-alpha compare
EX31_RS17275 -1.4 -2.0 DUF72 domain-containing protein compare
EX31_RS06055 -1.4 -3.3 phosphate ABC transporter ATP-binding protein PstB compare
EX31_RS23500 -1.4 -2.9 peptidoglycan-associated lipoprotein Pal compare
EX31_RS21400 -1.4 -5.4 transketolase compare
EX31_RS10750 -1.4 -2.3 chromate transporter compare
EX31_RS20735 -1.4 -3.8 exodeoxyribonuclease V subunit beta compare
EX31_RS25660 -1.4 -3.3 multidrug efflux pump-associated protein, AcrZ family compare
EX31_RS07885 -1.4 -7.2 uroporphyrinogen-III C-methyltransferase compare
EX31_RS23640 -1.4 -4.4 6-phosphogluconolactonase compare
EX31_RS24655 -1.3 -3.0 hypothetical protein compare
EX31_RS06070 -1.3 -6.3 phosphate ABC transporter substrate-binding protein PstS compare
EX31_RS16655 -1.3 -1.5 hypothetical protein compare
EX31_RS02525 -1.3 -5.9 ABC transporter permease compare
EX31_RS24420 -1.3 -5.4 phosphate acyltransferase PlsX compare
EX31_RS17710 -1.3 -3.6 hypothetical protein compare
EX31_RS11675 -1.3 -2.0 Holliday junction branch migration protein RuvA compare
EX31_RS02310 -1.3 -1.3 hypothetical protein compare
EX31_RS25725 -1.3 -2.1 hypothetical protein compare
EX31_RS24010 -1.3 -2.9 GNAT family N-acetyltransferase compare
EX31_RS06065 -1.3 -6.1 phosphate ABC transporter permease PstC compare
EX31_RS10100 -1.2 -1.9 two-component system response regulator RssB compare
EX31_RS13045 -1.2 -8.1 bifunctional uridylyltransferase/uridylyl-removing protein GlnD compare
EX31_RS08515 -1.2 -8.9 lipoprotein NlpI compare
EX31_RS09190 -1.2 -2.0 ABC transporter permease compare
EX31_RS09290 -1.2 -1.8 hypothetical protein compare
EX31_RS19655 -1.2 -4.0 beta-ketoacyl-ACP synthase I compare
EX31_RS06330 -1.2 -2.8 exodeoxyribonuclease III compare
EX31_RS08535 -1.2 -2.4 30S ribosome-binding factor RbfA compare
EX31_RS01545 -1.1 -2.0 hypothetical protein compare
EX31_RS02325 -1.1 -1.9 GNAT family N-acetyltransferase compare
EX31_RS24645 -1.1 -1.7 DUF2591 domain-containing protein compare
EX31_RS11690 -1.1 -2.0 dihydroneopterin triphosphate diphosphatase compare
EX31_RS15670 -1.1 -2.9 phage-shock protein compare
EX31_RS25140 -1.1 -2.1 AlpA family transcriptional regulator compare
EX31_RS03315 -1.1 -2.4 type VI secretion system tube protein Hcp compare
EX31_RS00715 -1.1 -2.8 class A beta-lactamase compare
EX31_RS25970 -1.1 -2.2 glutathione transferase GstA compare
EX31_RS25370 -1.1 -7.0 HTH-type transcriptional regulator MetR compare
EX31_RS00565 -1.1 -2.5 UbiD family decarboxylase compare
EX31_RS04925 -1.1 -2.2 Fe-S biogenesis protein NfuA compare
EX31_RS15155 -1.1 -1.9 diaminopimelate epimerase compare
EX31_RS05010 -1.1 -8.6 glycogen synthase GlgA compare
EX31_RS22740 -1.1 -5.7 4-hydroxy-tetrahydrodipicolinate synthase compare
EX31_RS06140 -1.1 -6.6 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
EX31_RS11685 -1.0 -3.5 YebC/PmpR family DNA-binding transcriptional regulator compare
EX31_RS24395 -1.0 -3.2 ribonuclease E compare
EX31_RS19205 -1.0 -2.2 50S ribosomal protein L25 compare
EX31_RS23560 -1.0 -1.5 phosphate starvation-inducible protein compare
EX31_RS17010 -1.0 -2.4 sugar ABC transporter permease compare
EX31_RS25125 -1.0 -2.3 thr operon leader peptide compare
EX31_RS09140 -1.0 -3.3 cellulase family glycosylhydrolase compare
EX31_RS23495 -1.0 -3.7 Tol-Pal system protein TolB compare
EX31_RS07750 -1.0 -6.5 glutamate--cysteine ligase compare
EX31_RS10375 -1.0 -1.6 hypothetical protein compare
EX31_RS24625 -1.0 -1.5 DUF2766 domain-containing protein compare
EX31_RS14160 -1.0 -3.9 HTH-type transcriptional repressor FabR compare
EX31_RS11115 -1.0 -2.2 creatininase family protein compare
EX31_RS16690 -1.0 -2.5 CoA transferase compare
EX31_RS14220 -0.9 -2.6 met regulon transcriptional regulator MetJ compare
EX31_RS11500 -0.9 -1.2 glycosyltransferase family 2 protein compare
EX31_RS23945 -0.9 -2.2 ABC transporter ATP-binding protein compare
EX31_RS18115 -0.9 -2.6 aliphatic sulfonate ABC transporter permease SsuC compare


Specific Phenotypes

For 4 genes in this experiment

For carbon source Sucrose in Rahnella sp. WP5

For carbon source Sucrose across organisms