Experiment set2IT087 for Rahnella sp. WP5

Compare to:

Sucrose carbon source

200 most detrimental genes:

  gene name fitness t score description  
EX31_RS16350 +2.5 13.2 DsbA family protein compare
EX31_RS21020 +1.7 4.0 D-sedoheptulose 7-phosphate isomerase compare
EX31_RS10180 +1.7 1.8 type II 3-dehydroquinate dehydratase compare
EX31_RS02110 +1.6 4.4 L-rhamnose mutarotase compare
EX31_RS14405 +1.6 2.5 lipopolysaccharide heptosyltransferase RfaC compare
EX31_RS16355 +1.6 3.3 hypothetical protein compare
EX31_RS14400 +1.6 6.7 ADP-heptose--LPS heptosyltransferase RfaF compare
EX31_RS02560 +1.5 2.1 hypothetical protein compare
EX31_RS08140 +1.3 3.0 bifunctional D-glycero-beta-D-manno-heptose-7-phosphate kinase/D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase HldE compare
EX31_RS01190 +1.3 3.3 hypothetical protein compare
EX31_RS09535 +1.2 2.3 flagellar hook-basal body complex protein FliE compare
EX31_RS14435 +1.2 6.0 glycosyltransferase family 4 protein compare
EX31_RS01990 +1.2 1.1 type VI secretion system baseplate subunit TssE compare
EX31_RS10535 +1.2 2.0 GtrA family protein compare
EX31_RS13335 +1.2 2.1 transcriptional regulator compare
EX31_RS10090 +1.1 3.0 NAD-dependent epimerase compare
EX31_RS14445 +1.1 5.5 glycosyltransferase family 2 protein compare
EX31_RS01885 +1.1 1.8 type IV secretion protein Rhs compare
EX31_RS14410 +1.1 9.8 glycosyltransferase family 9 protein compare
EX31_RS25020 +1.1 3.5 hypothetical protein compare
EX31_RS07015 +1.1 2.5 xanthine dehydrogenase accessory protein XdhC compare
EX31_RS26085 +1.1 2.3 alpha/beta hydrolase compare
EX31_RS09550 +1.1 2.3 flagellar assembly protein FliH compare
EX31_RS18450 +1.1 1.8 hypothetical protein compare
EX31_RS09665 +1.1 2.1 hypothetical protein compare
EX31_RS24065 +1.1 1.5 pyrimidine utilization flavin reductase protein F compare
EX31_RS07360 +1.0 3.5 protease modulator HflC compare
EX31_RS06955 +1.0 2.6 hypothetical protein compare
EX31_RS04800 +1.0 6.8 two-component system response regulator OmpR compare
EX31_RS09600 +1.0 2.3 flagellar type III secretion system protein FliR compare
EX31_RS26040 +1.0 1.4 hypothetical protein compare
EX31_RS07410 +1.0 1.7 NAD(P)H-dependent oxidoreductase compare
EX31_RS19845 +0.9 2.0 DNA polymerase II small subunit compare
EX31_RS09925 +0.9 1.6 alpha-ribazole phosphatase compare
EX31_RS07135 +0.9 1.5 hypothetical protein compare
EX31_RS00130 +0.9 2.8 GGDEF domain-containing protein compare
EX31_RS04645 +0.9 0.8 DUF2559 family protein compare
EX31_RS16615 +0.9 2.2 membrane protein compare
EX31_RS09710 +0.9 2.3 LysR family transcriptional regulator compare
EX31_RS13775 +0.9 1.6 transcriptional regulator SlyA compare
EX31_RS10830 +0.9 1.4 copper-binding protein compare
EX31_RS16680 +0.9 1.6 enoyl-CoA hydratase compare
EX31_RS02295 +0.9 2.9 gluconate 2-dehydrogenase subunit 3 family protein compare
EX31_RS15085 +0.8 3.2 lipid III flippase WzxE compare
EX31_RS09265 +0.8 2.0 L-Ala-D/L-Glu epimerase compare
EX31_RS02410 +0.8 1.2 multidrug DMT transporter compare
EX31_RS14030 +0.8 2.7 glutathione peroxidase compare
EX31_RS06235 +0.8 1.6 hypothetical protein compare
EX31_RS10835 +0.8 2.0 TolC family protein compare
EX31_RS07080 +0.8 2.8 NCS2 family permease compare
EX31_RS25225 +0.8 1.9 hypothetical protein compare
EX31_RS01485 +0.8 1.6 helix-turn-helix domain-containing protein compare
EX31_RS06585 +0.8 1.3 DUF2501 domain-containing protein compare
EX31_RS07685 +0.8 2.2 phage tail assembly protein compare
EX31_RS15095 +0.8 1.6 O-antigen assembly polymerase compare
EX31_RS07215 +0.8 3.0 Re/Si-specific NAD(P)(+) transhydrogenase subunit alpha compare
EX31_RS25400 +0.8 1.3 transcriptional regulator compare
EX31_RS24285 +0.8 2.9 DUF1493 family protein compare
EX31_RS07540 +0.8 1.8 helix-turn-helix transcriptional regulator compare
EX31_RS25295 +0.8 1.6 GhoT/OrtT family toxin compare
EX31_RS15460 +0.8 2.3 hypothetical protein compare
EX31_RS10435 +0.8 1.4 biotin-dependent carboxyltransferase family protein compare
EX31_RS01600 +0.8 1.8 tail fiber protein compare
EX31_RS07075 +0.8 2.6 bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG compare
EX31_RS01605 +0.8 1.6 tail protein compare
EX31_RS13780 +0.8 1.9 DUF1656 domain-containing protein compare
EX31_RS14320 +0.7 1.8 envelope stress response regulator transcription factor CpxR compare
EX31_RS07530 +0.7 2.2 ABC transporter ATP-binding protein compare
EX31_RS09670 +0.7 1.3 bleomycin resistance protein compare
EX31_RS01445 +0.7 2.1 J domain-containing protein compare
EX31_RS01650 +0.7 1.7 hypothetical protein compare
EX31_RS05870 +0.7 2.3 plasmid stabilization protein compare
EX31_RS10020 +0.7 1.0 YciI family protein compare
EX31_RS09285 +0.7 1.5 hypothetical protein compare
EX31_RS00540 +0.7 1.5 pentapeptide MXKDX repeat protein compare
EX31_RS01960 +0.7 1.6 DUF2931 family protein compare
EX31_RS13870 +0.7 1.2 pyruvate kinase PykF compare
EX31_RS11320 +0.7 3.6 flagellar basal body P-ring formation protein FlgA compare
EX31_RS00230 +0.7 2.0 ABC transporter permease compare
EX31_RS00630 +0.7 1.4 iron dicitrate ABC transporter ATP-binding protein compare
EX31_RS16285 +0.7 1.9 conjugal transfer protein compare
EX31_RS06395 +0.7 2.4 alginate lyase family protein compare
EX31_RS17030 +0.7 3.3 FAD-dependent oxidoreductase compare
EX31_RS11525 +0.7 2.0 UTP--glucose-1-phosphate uridylyltransferase GalU compare
EX31_RS23965 +0.7 1.5 hypothetical protein compare
EX31_RS02180 +0.7 1.4 peptide-methionine (R)-S-oxide reductase MsrB compare
EX31_RS12660 +0.7 3.4 DedA family protein compare
EX31_RS14610 +0.7 1.6 twin-arginine translocase subunit TatE compare
EX31_RS19010 +0.7 2.1 alkylphosphonate utilization protein compare
EX31_RS16670 +0.7 2.3 NAD(P)-dependent alcohol dehydrogenase compare
EX31_RS17485 +0.7 2.4 ABC transporter substrate-binding protein compare
EX31_RS01430 +0.7 2.6 type 1 glutamine amidotransferase domain-containing protein compare
EX31_RS00910 +0.7 1.6 LysR family transcriptional regulator compare
EX31_RS24845 +0.7 2.0 YebV family protein compare
EX31_RS09185 +0.7 2.4 ABC transporter permease compare
EX31_RS18305 +0.7 1.8 tail fiber assembly protein compare
EX31_RS16610 +0.7 2.0 glycosyltransferase family 2 protein compare
EX31_RS07430 +0.7 2.0 transporter substrate-binding domain-containing protein compare
EX31_RS00930 +0.7 2.8 glycosyltransferase family 9 protein compare
EX31_RS10805 +0.7 2.8 efflux transporter outer membrane subunit compare
EX31_RS09655 +0.7 0.6 membrane protein compare
EX31_RS00990 +0.7 2.8 type VI secretion system protein TssA compare
EX31_RS11335 +0.7 1.2 flagellar protein FlhE compare
EX31_RS02080 +0.6 1.5 FadR family transcriptional regulator compare
EX31_RS15385 +0.6 3.7 nitrogen fixation protein NifM compare
EX31_RS04320 +0.6 1.4 hypothetical protein compare
EX31_RS05730 +0.6 0.9 isochorismatase family protein compare
EX31_RS02450 +0.6 3.0 AMP-binding protein compare
EX31_RS24550 +0.6 1.7 cupin domain-containing protein compare
EX31_RS11655 +0.6 2.5 LysR family transcriptional regulator compare
EX31_RS24545 +0.6 3.0 peptidase T compare
EX31_RS07055 +0.6 2.2 carbohydrate ABC transporter permease compare
EX31_RS16545 +0.6 1.8 PTS lactose/cellobiose transporter subunit IIA compare
EX31_RS01985 +0.6 2.2 type VI secretion system lipoprotein TssJ compare
EX31_RS09455 +0.6 3.5 FliC/FljB family flagellin compare
EX31_RS23755 +0.6 0.9 molybdopterin synthase sulfur carrier subunit compare
EX31_RS09995 +0.6 1.1 YkgJ family cysteine cluster protein compare
EX31_RS23725 +0.6 1.8 DUF2132 domain-containing protein compare
EX31_RS02385 +0.6 0.5 hypothetical protein compare
EX31_RS22715 +0.6 1.5 arsenate reductase (glutaredoxin) compare
EX31_RS13980 +0.6 1.5 lipoate--protein ligase A compare
EX31_RS25840 +0.6 2.6 transposase compare
EX31_RS02200 +0.6 2.6 Hcp family type VI secretion system effector compare
EX31_RS02910 +0.6 2.2 hypothetical protein compare
EX31_RS11490 +0.6 2.1 glycosyltransferase compare
EX31_RS02925 +0.6 3.6 polysaccharide biosynthesis tyrosine autokinase compare
EX31_RS14550 +0.6 1.0 Trk system potassium transporter TrkH compare
EX31_RS09075 +0.6 1.4 type 1 fimbrial protein compare
EX31_RS06320 +0.6 2.1 YnjH family protein compare
EX31_RS11130 +0.6 1.8 ABC transporter permease compare
EX31_RS06595 +0.6 0.8 electron transport complex subunit E compare
EX31_RS22495 +0.6 2.4 prephenate dehydrogenase compare
EX31_RS07435 +0.6 1.7 urea carboxylase-associated family protein compare
EX31_RS23630 +0.6 2.2 transcriptional regulator compare
EX31_RS07830 +0.6 2.4 murein hydrolase activator NlpD compare
EX31_RS23255 +0.6 2.5 ROK family protein compare
EX31_RS12350 +0.6 2.5 DUF4311 domain-containing protein compare
EX31_RS20240 +0.6 2.0 DUF2919 domain-containing protein compare
EX31_RS25025 +0.6 1.2 DUF1272 domain-containing protein compare
EX31_RS18090 +0.6 2.1 cell division protein ZapC compare
EX31_RS19415 +0.6 2.1 NADH-quinone oxidoreductase subunit NuoF compare
EX31_RS06275 +0.6 1.7 D-hexose-6-phosphate mutarotase compare
EX31_RS11870 +0.6 1.8 envelope stress response protein PspG compare
EX31_RS04335 +0.6 2.5 site-specific integrase compare
EX31_RS20515 +0.6 3.2 cytoskeleton protein RodZ compare
EX31_RS11215 +0.6 1.6 TetR family transcriptional regulator compare
EX31_RS19545 +0.6 2.5 histidine ABC transporter ATP-binding protein HisP compare
EX31_RS11295 +0.6 2.1 flagellar basal body rod protein FlgF compare
EX31_RS25110 +0.6 1.5 DUF2474 domain-containing protein compare
EX31_RS11280 +0.6 1.6 flagellar basal body P-ring protein FlgI compare
EX31_RS10920 +0.6 1.1 transcriptional regulator RcsA compare
EX31_RS13055 +0.6 2.9 DUF3461 family protein compare
EX31_RS20395 +0.6 1.6 hydroxyethylthiazole kinase compare
EX31_RS07465 +0.6 1.8 LysR family transcriptional regulator compare
EX31_RS10290 +0.6 1.5 sugar ABC transporter permease compare
EX31_RS17995 +0.6 2.0 heat shock protein HspQ compare
EX31_RS12240 +0.5 1.3 rod shape-determining protein MreC compare
EX31_RS07250 +0.5 1.7 ABC transporter ATP-binding protein compare
EX31_RS02920 +0.5 0.6 glycosyltransferase compare
EX31_RS17005 +0.5 1.3 carbohydrate ABC transporter permease compare
EX31_RS01800 +0.5 2.0 porin compare
EX31_RS19310 +0.5 3.6 ribonucleotide-diphosphate reductase subunit beta compare
EX31_RS04600 +0.5 1.8 ureidoglycolate lyase compare
EX31_RS06300 +0.5 2.3 asparaginase compare
EX31_RS10130 +0.5 2.2 M81 family metallopeptidase compare
EX31_RS01235 +0.5 1.7 metalloregulator ArsR/SmtB family transcription factor compare
EX31_RS15585 +0.5 1.7 ABC transporter permease compare
EX31_RS02215 +0.5 2.0 isopentenyl-diphosphate Delta-isomerase compare
EX31_RS19560 +0.5 2.6 lysine/arginine/ornithine ABC transporter substrate-binding protein ArgT compare
EX31_RS10840 +0.5 2.1 efflux RND transporter periplasmic adaptor subunit compare
EX31_RS17785 +0.5 1.6 [citrate (pro-3S)-lyase] ligase compare
EX31_RS07535 +0.5 1.4 cytochrome b/b6 domain-containing protein compare
EX31_RS06825 +0.5 1.4 amino acid ABC transporter ATP-binding protein compare
EX31_RS07220 +0.5 2.2 DUF1471 domain-containing protein compare
EX31_RS11570 +0.5 2.1 LysR family transcriptional regulator compare
EX31_RS10460 +0.5 2.5 ShlB/FhaC/HecB family hemolysin secretion/activation protein compare
EX31_RS18205 +0.5 2.7 winged helix-turn-helix domain-containing protein compare
EX31_RS06785 +0.5 3.0 hypothetical protein compare
EX31_RS24175 +0.5 2.7 hypothetical protein compare
EX31_RS01310 +0.5 1.1 DUF2493 domain-containing protein compare
EX31_RS03650 +0.5 2.3 division/cell wall cluster transcriptional repressor MraZ compare
EX31_RS22565 +0.5 1.9 Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK compare
EX31_RS17560 +0.5 2.3 FadR family transcriptional regulator compare
EX31_RS15530 +0.5 0.8 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit compare
EX31_RS25435 +0.5 1.7 bacterioferritin-associated ferredoxin compare
EX31_RS23355 +0.5 2.0 YbfA family protein compare
EX31_RS10670 +0.5 3.7 murein DD-endopeptidase MepM compare
EX31_RS15910 +0.5 3.0 thiol:disulfide interchange protein DsbA compare
EX31_RS02835 +0.5 3.0 endonuclease/exonuclease/phosphatase family protein compare
EX31_RS18150 +0.5 1.4 MBL fold metallo-hydrolase compare
EX31_RS14325 +0.5 3.2 envelope stress sensor histidine kinase CpxA compare
EX31_RS17110 +0.5 2.3 hypothetical protein compare
EX31_RS01785 +0.5 1.8 YfdQ family protein compare
EX31_RS24365 +0.5 1.4 response regulator transcription factor compare
EX31_RS04040 +0.5 2.8 YtjB family periplasmic protein compare
EX31_RS10010 +0.5 1.9 acyl-CoA thioester hydrolase YciA compare
EX31_RS18760 +0.5 1.9 DeoR/GlpR transcriptional regulator compare
EX31_RS20140 +0.5 0.9 hypothetical protein compare
EX31_RS09225 +0.5 1.2 iron-containing alcohol dehydrogenase family protein compare
EX31_RS12505 +0.5 2.5 ClpXP protease specificity-enhancing factor compare


Specific Phenotypes

For 4 genes in this experiment

For carbon source Sucrose in Rahnella sp. WP5

For carbon source Sucrose across organisms