Experiment set2IT087 for Methanococcus maripaludis JJ

Compare to:

H2 McCas, 2.5g/L bicarb, 200 mM MOPs, 40 psi H2CO2, SO4 FREE

200 most important genes:

  gene name fitness t score description  
MMJJ_RS08625 -4.7 -5.6 magnesium/cobalt transporter CorA compare
MMJJ_RS06625 -4.6 -3.0 pyruvate synthase subunit PorB compare
MMJJ_RS05445 -4.4 -2.9 2-oxoacid:acceptor oxidoreductase subunit alpha compare
MMJJ_RS01600 -4.1 -2.8 radical SAM protein compare
MMJJ_RS01870 -4.0 -2.7 methanogenesis marker 15 protein compare
MMJJ_RS06805 -3.7 -4.3 monovalent cation/H+ antiporter subunit E compare
MMJJ_RS05155 -3.7 -7.7 5-amino-6-(D-ribitylamino)uracil--L-tyrosine 4-hydroxyphenyl transferase CofH compare
MMJJ_RS05650 -3.6 -4.2 formylmethanofuran dehydrogenase subunit B compare
MMJJ_RS00210 -3.6 -2.4 DUF530 family protein compare
MMJJ_RS03200 -3.5 -3.3 uroporphyrinogen-III synthase compare
MMJJ_RS03840 -3.5 -3.4 DHH family phosphoesterase compare
MMJJ_RS08095 -3.5 -4.7 cobyric acid synthase CobQ compare
MMJJ_RS03895 -3.4 -4.8 hydrogenase expression/formation protein HypE compare
MMJJ_RS01935 -3.4 -5.6 O-phosphoseryl-tRNA(Sec) selenium transferase compare
MMJJ_RS01750 -3.4 -3.6 ferrous iron transport protein A compare
MMJJ_RS06040 -3.3 -5.0 NADH-quinone oxidoreductase subunit H compare
MMJJ_RS02920 -3.2 -3.4 30S ribosomal protein S27ae compare
MMJJ_RS04685 -3.2 -11.1 carbamoyltransferase HypF compare
MMJJ_RS06490 -3.1 -3.6 methanogenesis marker 2 protein compare
MMJJ_RS04980 -3.1 -6.8 bifunctional precorrin-2 dehydrogenase/sirohydrochlorin ferrochelatase compare
MMJJ_RS03760 -3.1 -4.2 hydrogenase maturation nickel metallochaperone HypA compare
MMJJ_RS06225 -3.1 -2.8 adenosylmethionine decarboxylase compare
MMJJ_RS05535 -3.0 -14.5 hypothetical protein compare
MMJJ_RS06695 -3.0 -3.6 amidohydrolase compare
MMJJ_RS03110 -3.0 -4.7 tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))- methylthiotransferase compare
MMJJ_RS07950 -3.0 -4.7 4Fe-4S binding protein compare
MMJJ_RS08080 -3.0 -11.2 TIGR00300 family protein compare
MMJJ_RS02045 -3.0 -4.5 molybdenum cofactor guanylyltransferase compare
MMJJ_RS07350 -3.0 -4.7 4Fe-4S binding protein compare
MMJJ_RS00275 -3.0 -3.4 coenzyme F420-0:L-glutamate ligase compare
MMJJ_RS05620 -2.9 -5.5 CoB--CoM heterodisulfide reductase iron-sulfur subunit A family protein compare
MMJJ_RS08660 -2.9 -4.3 acetylornithine transaminase compare
MMJJ_RS08870 -2.9 -2.1 2-isopropylmalate synthase compare
MMJJ_RS01755 -2.9 -3.3 ferrous iron transport protein B compare
MMJJ_RS06860 -2.9 -6.3 hypothetical protein compare
MMJJ_RS04800 -2.9 -7.3 2-phospho-L-lactate guanylyltransferase compare
MMJJ_RS05935 -2.9 -3.3 Era-like GTP-binding protein compare
MMJJ_RS05950 -2.8 -4.2 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase compare
MMJJ_RS03055 -2.8 -4.0 hypothetical protein compare
MMJJ_RS07720 -2.8 -3.5 UPF0058 family protein compare
MMJJ_RS06485 -2.8 -3.7 phosphoglycerate kinase compare
MMJJ_RS04485 -2.8 -9.3 riboflavin synthase compare
MMJJ_RS07705 -2.8 -3.2 GTP-binding protein EngB compare
MMJJ_RS00645 -2.8 -13.6 adenosylmethionine--8-amino-7-oxononanoate transaminase compare
MMJJ_RS04200 -2.8 -7.4 triphosphoribosyl-dephospho-CoA synthase compare
MMJJ_RS02200 -2.7 -10.5 chorismate pyruvate-lyase family protein compare
MMJJ_RS03170 -2.7 -10.1 DUF5612 domain-containing protein compare
MMJJ_RS06750 -2.7 -3.7 homoaconitase large subunit compare
MMJJ_RS06910 -2.6 -4.9 energy-converting NiFe hydrogenase A subunit EhaA compare
MMJJ_RS03670 -2.6 -5.1 precorrin-2 C(20)-methyltransferase compare
MMJJ_RS08850 -2.6 -3.0 succinate dehydrogenase/fumarate reductase iron-sulfur subunit compare
MMJJ_RS05995 -2.6 -3.2 ATP-binding cassette domain-containing protein compare
MMJJ_RS07980 -2.6 -10.4 biotin synthase BioB compare
MMJJ_RS03620 -2.5 -7.4 DUF2097 domain-containing protein compare
MMJJ_RS06760 -2.5 -5.2 Ni-sirohydrochlorin a,c-diamide synthase compare
MMJJ_RS08055 -2.5 -8.4 methanogenesis marker 14 protein compare
MMJJ_RS00600 -2.5 -3.9 hydroxymethylbilane synthase compare
MMJJ_RS07725 -2.5 -7.9 DNA primase DnaG compare
MMJJ_RS03580 -2.5 -3.9 TIGR00303 family protein compare
MMJJ_RS05260 -2.5 -6.1 ATP-grasp domain-containing protein compare
MMJJ_RS03820 -2.5 -3.6 hydrogenase formation protein HypD compare
MMJJ_RS03125 -2.4 -4.9 GMC oxidoreductase compare
MMJJ_RS03190 -2.4 -3.9 phosphopyruvate hydratase compare
MMJJ_RS04155 -2.4 -7.2 hypothetical protein compare
MMJJ_RS03615 -2.4 -3.4 cobalt-precorrin-8 methylmutase compare
MMJJ_RS00205 -2.4 -6.8 adenosylcobinamide-phosphate synthase CbiB compare
MMJJ_RS01690 -2.4 -3.9 methanogenesis marker 12 protein compare
MMJJ_RS06220 -2.4 -5.9 polyamine aminopropyltransferase compare
MMJJ_RS05610 -2.4 -5.2 CDP-2,3-bis-(O-geranylgeranyl)-sn-glycerol synthase compare
MMJJ_RS04145 -2.4 -9.8 glutamate-1-semialdehyde 2,1-aminomutase compare
MMJJ_RS04595 -2.4 -5.5 hypothetical protein compare
MMJJ_RS06155 -2.4 -5.9 phosphatidylglycerophosphatase A compare
MMJJ_RS06700 -2.4 -6.0 L-seryl-tRNA(Sec) kinase compare
MMJJ_RS04730 -2.3 -3.2 tyrosine decarboxylase MfnA compare
MMJJ_RS06270 -2.3 -9.3 dethiobiotin synthase compare
MMJJ_RS04995 -2.3 -5.3 Tfx family DNA-binding protein compare
MMJJ_RS05930 -2.3 -2.2 cell division protein SepF compare
MMJJ_RS03005 -2.3 -4.2 Ni-sirohydrochlorin a,c-diamide reductive cyclase catalytic subunit compare
MMJJ_RS01830 -2.3 -3.8 tRNA(Ile)(2)-agmatinylcytidine synthase compare
MMJJ_RS07410 -2.3 -4.4 methanogenesis marker protein Mmp4/MtxX compare
MMJJ_RS04150 -2.3 -3.6 DUF5379 domain-containing protein compare
MMJJ_RS09190 -2.3 -2.6 tryptophan synthase subunit beta compare
MMJJ_RS06840 -2.3 -4.8 nickel-dependent hydrogenase large subunit compare
MMJJ_RS03115 -2.3 -5.8 sulfopyruvate decarboxylase subunit alpha compare
MMJJ_RS00370 -2.2 -2.3 asparagine synthase (glutamine-hydrolyzing) compare
MMJJ_RS01200 -2.2 -3.3 PRC-barrel domain-containing protein compare
MMJJ_RS02090 -2.2 -5.8 tyramine--L-glutamate ligase compare
MMJJ_RS06265 -2.2 -13.2 8-amino-7-oxononanoate synthase compare
MMJJ_RS00475 -2.2 -2.5 bifunctional ornithine acetyltransferase/N-acetylglutamate synthase compare
MMJJ_RS07470 -2.2 -3.0 50S ribosome-binding GTPase compare
MMJJ_RS07275 -2.1 -2.8 formate--phosphoribosylaminoimidazolecarboxamide ligase compare
MMJJ_RS06390 -2.1 -2.5 NADPH-dependent F420 reductase compare
MMJJ_RS03785 -2.1 -3.4 hypothetical protein compare
MMJJ_RS06260 -2.1 -7.3 6-carboxyhexanoate--CoA ligase compare
MMJJ_RS03230 -2.1 -5.2 NAD(P)/FAD-dependent oxidoreductase compare
MMJJ_RS00355 -2.1 -3.6 ribonuclease P protein component 4 compare
MMJJ_RS04700 -2.1 -6.5 deoxyhypusine synthase compare
MMJJ_RS07945 -2.1 -2.8 4Fe-4S binding protein compare
MMJJ_RS04475 -2.0 -3.8 3,4-dihydroxy-2-butanone-4-phosphate synthase compare
MMJJ_RS01350 -2.0 -6.4 sodium:proton antiporter compare
MMJJ_RS05810 -2.0 -6.4 precorrin-4 C(11)-methyltransferase compare
MMJJ_RS08010 -2.0 -7.4 phosphoadenosine phosphosulfate reductase family protein compare
MMJJ_RS05415 -2.0 -2.2 hypothetical protein compare
MMJJ_RS04675 -2.0 -6.9 thiamine pyrophosphate-binding protein compare
MMJJ_RS03815 -2.0 -2.3 nascent polypeptide-associated complex protein compare
MMJJ_RS06185 -2.0 -4.7 cobalamin biosynthesis protein compare
MMJJ_RS08535 -2.0 -3.8 NOL1/NOP2/sun family putative RNA methylase compare
MMJJ_RS03150 -2.0 -6.1 2-phospho-L-lactate transferase compare
MMJJ_RS02040 -2.0 -2.2 Asp-tRNA(Asn) amidotransferase subunit GatC compare
MMJJ_RS07000 -1.9 -1.9 TrkH family potassium uptake protein compare
MMJJ_RS04790 -1.9 -4.1 biotin--[acetyl-CoA-carboxylase] ligase compare
MMJJ_RS04520 -1.9 -4.8 coenzyme F430 synthase compare
MMJJ_RS05295 -1.9 -9.2 cobyrinic acid a,c-diamide synthase compare
MMJJ_RS05655 -1.9 -6.7 HisA/HisF family protein compare
MMJJ_RS08155 -1.9 -4.6 cobalt-precorrin-5B (C(1))-methyltransferase CbiD compare
MMJJ_RS08330 -1.9 -3.2 SufD family Fe-S cluster assembly protein compare
MMJJ_RS08840 -1.9 -4.0 calcium/sodium antiporter compare
MMJJ_RS03270 -1.9 -2.3 ribosome biogenesis/translation initiation ATPase RLI compare
MMJJ_RS07430 -1.8 -2.6 ribonuclease VapC compare
MMJJ_RS06375 -1.8 -3.5 UbiX family flavin prenyltransferase compare
MMJJ_RS07345 -1.8 -7.8 homocysteine biosynthesis protein compare
MMJJ_RS03965 -1.8 -2.1 DNA-directed RNA polymerase subunit L compare
MMJJ_RS03865 -1.8 -2.4 phosphoribosyl-AMP cyclohydrolase compare
MMJJ_RS07155 -1.8 -8.0 [5-(aminomethyl)furan-3-yl]methyl phosphate kinase compare
MMJJ_RS00580 -1.8 -2.0 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase subunit CofG compare
MMJJ_RS07170 -1.8 -4.8 pyridoxal phosphate-dependent aminotransferase compare
MMJJ_RS06255 -1.8 -6.8 tRNA uridine(34) 5-carboxymethylaminomethyl modification radical SAM/GNAT enzyme Elp3 compare
MMJJ_RS05070 -1.8 -2.0 DNA primase catalytic subunit PriS compare
MMJJ_RS08035 -1.8 -7.7 cobalt-precorrin-7 (C(5))-methyltransferase compare
MMJJ_RS04670 -1.8 -3.4 DUF2117 domain-containing protein compare
MMJJ_RS06175 -1.8 -2.5 DUF1743 domain-containing protein compare
MMJJ_RS06180 -1.8 -3.6 tryptophan--tRNA ligase compare
MMJJ_RS07455 -1.8 -4.9 coenzyme F420-reducing hydrogenase, FrhD protein compare
MMJJ_RS06715 -1.8 -10.3 lactaldehyde dehydrogenase compare
MMJJ_RS07190 -1.8 -4.2 RtcB family protein compare
MMJJ_RS04650 -1.8 -5.3 nitrogenase iron protein compare
MMJJ_RS04680 -1.7 -9.1 topoisomerase DNA-binding C4 zinc finger domain-containing protein compare
MMJJ_RS06930 -1.7 -2.7 type II methionyl aminopeptidase compare
MMJJ_RS07160 -1.7 -13.7 M20 family metallo-hydrolase compare
MMJJ_RS05330 -1.7 -2.5 DNA polymerase II large subunit compare
MMJJ_RS00215 -1.7 -2.5 CCA tRNA nucleotidyltransferase compare
MMJJ_RS07245 -1.7 -4.7 amidohydrolase family protein compare
MMJJ_RS06110 -1.7 -2.0 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC compare
MMJJ_RS02855 -1.7 -8.5 DEAD/DEAH box helicase compare
MMJJ_RS05490 -1.7 -2.9 imidazole glycerol phosphate synthase subunit HisF compare
MMJJ_RS06600 -1.7 -2.7 DUF555 domain-containing protein compare
MMJJ_RS04975 -1.7 -1.8 glycosyltransferase family 4 protein compare
MMJJ_RS03875 -1.7 -4.3 CBS domain-containing protein compare
MMJJ_RS06865 -1.7 -2.2 NADH-quinone oxidoreductase subunit H compare
MMJJ_RS03095 -1.7 -2.4 bifunctional N(6)-L-threonylcarbamoyladenine synthase/serine/threonine protein kinase compare
MMJJ_RS00195 -1.7 -3.0 precorrin-3B C(17)-methyltransferase compare
MMJJ_RS03845 -1.7 -3.9 translation initiation factor IF-2 compare
MMJJ_RS04770 -1.6 -3.2 formate-dependent phosphoribosylglycinamide formyltransferase compare
MMJJ_RS05575 -1.6 -3.1 2-amino-5-formylamino-6-ribosylaminopyrimidin- 4(3H)-one 5'-monophosphate deformylase compare
MMJJ_RS06705 -1.6 -4.6 bifunctional NADP phosphatase/NAD kinase compare
MMJJ_RS05375 -1.6 -10.4 radical SAM protein compare
MMJJ_RS03295 -1.6 -9.8 PHP domain-containing protein compare
MMJJ_RS09135 -1.6 -9.0 archaeosine biosynthesis radical SAM protein RaSEA compare
MMJJ_RS01880 -1.6 -2.3 RlmE family RNA methyltransferase compare
MMJJ_RS01345 -1.6 -4.6 (5-formylfuran-3-yl)methyl phosphate synthase compare
MMJJ_RS01810 -1.6 -2.0 methyl coenzyme M reductase system, component A2 compare
MMJJ_RS00560 -1.6 -3.0 homoisocitrate dehydrogenase compare
MMJJ_RS07375 -1.6 -7.8 tRNA 2-thiocytidine biosynthesis TtcA family protein compare
MMJJ_RS08320 -1.6 -2.0 CDP-diacylglycerol--serine O-phosphatidyltransferase compare
MMJJ_RS06215 -1.6 -3.8 agmatinase compare
MMJJ_RS08020 -1.6 -8.3 nucleotidyltransferase domain-containing protein compare
MMJJ_RS08250 -1.6 -5.6 hydrogenase maturation peptidase HycI compare
MMJJ_RS06015 -1.5 -7.4 Na(+)/H(+) antiporter subunit B compare
MMJJ_RS04985 -1.5 -2.0 glutamyl-tRNA reductase compare
MMJJ_RS04655 -1.5 -4.8 FAD-dependent oxidoreductase compare
MMJJ_RS06875 -1.5 -2.0 hypothetical protein compare
MMJJ_RS06510 -1.5 -2.9 LL-diaminopimelate aminotransferase compare
MMJJ_RS00450 -1.5 -1.7 DUF126 domain-containing protein compare
MMJJ_RS06250 -1.5 -2.4 nicotinamide-nucleotide adenylyltransferase compare
MMJJ_RS08340 -1.4 -4.2 archaeoflavoprotein AfpA compare
MMJJ_RS07360 -1.4 -2.1 TIGR00269 family protein compare
MMJJ_RS08620 -1.4 -3.4 DUF373 family protein compare
MMJJ_RS06000 -1.4 -5.1 cation:proton antiporter subunit C compare
MMJJ_RS08905 -1.4 -9.7 YcaO-related McrA-glycine thioamidation protein compare
MMJJ_RS01875 -1.4 -4.2 global nitrogen regulator NrpR compare
MMJJ_RS08925 -1.4 -7.9 winged helix-turn-helix transcriptional regulator compare
MMJJ_RS03650 -1.4 -6.0 class I SAM-dependent methyltransferase family protein compare
MMJJ_RS02035 -1.4 -4.1 4-hydroxy-tetrahydrodipicolinate synthase compare
MMJJ_RS00385 -1.4 -8.7 TIGR00454 family protein compare
MMJJ_RS00125 -1.4 -2.3 KEOPS complex subunit Cgi121 compare
MMJJ_RS06035 -1.4 -7.4 NADH-quinone oxidoreductase subunit B family protein compare
MMJJ_RS03765 -1.4 -5.3 hypothetical protein compare
MMJJ_RS03225 -1.4 -2.8 4Fe-4S binding protein compare
MMJJ_RS06885 -1.4 -2.2 EhaF family protein compare
MMJJ_RS01360 -1.3 -1.7 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
MMJJ_RS09175 -1.3 -1.4 anthranilate synthase component I compare
MMJJ_RS04565 -1.3 -2.9 sirohydrochlorin nickelochelatase compare
MMJJ_RS00570 -1.3 -1.5 ribonuclease P compare
MMJJ_RS06025 -1.3 -9.7 4Fe-4S binding protein compare
MMJJ_RS00360 -1.3 -2.1 adenosylhomocysteinase compare
MMJJ_RS06240 -1.3 -1.7 dihydropteroate synthase-like protein compare
MMJJ_RS08405 -1.2 -7.8 nickel-dependent hydrogenase large subunit compare
MMJJ_RS09055 -1.2 -6.2 NFACT family protein compare
MMJJ_RS06005 -1.2 -5.8 energy conserving hydrogenase EhbF compare
MMJJ_RS03660 -1.2 -2.7 DUF447 family protein compare


Specific Phenotypes

None in this experiment

For Methanococcus maripaludis JJ in rich t1 experiments