Experiment set2IT087 for Cupriavidus basilensis FW507-4G11

Compare to:

L-Asparagine nitrogen source

200 most important genes:

  gene name fitness t score description  
RR42_RS16265 -8.3 -5.7 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
RR42_RS18305 -6.8 -4.7 anthranilate phosphoribosyltransferase compare
RR42_RS14390 -6.3 -4.3 3-isopropylmalate dehydratase compare
RR42_RS06485 -6.2 -6.0 chorismate synthase compare
RR42_RS30655 -6.1 -4.2 LysR family transcriptional regulator compare
RR42_RS16250 -6.1 -7.2 sulfate adenylyltransferase compare
RR42_RS33255 -6.0 -3.9 protein-tyrosine phosphatase compare
RR42_RS04470 -5.7 -6.8 prephenate dehydrogenase compare
RR42_RS16280 -5.7 -10.2 transcriptional regulator compare
RR42_RS14400 -5.7 -5.5 isopropylmalate isomerase compare
RR42_RS05860 -5.5 -5.3 phospho-2-dehydro-3-deoxyheptonate aldolase compare
RR42_RS16255 -5.3 -10.1 sulfate adenylyltransferase compare
RR42_RS01385 -5.2 -4.5 5,10-methylenetetrahydrofolate reductase compare
RR42_RS14365 -5.2 -5.0 N-(5'-phosphoribosyl)anthranilate isomerase compare
RR42_RS19010 -4.9 -8.9 shikimate kinase compare
RR42_RS01160 -4.9 -9.7 homoserine O-acetyltransferase compare
RR42_RS14385 -4.8 -7.3 3-isopropylmalate dehydrogenase compare
RR42_RS04535 -4.7 -5.5 cysteine synthase compare
RR42_RS14320 -4.4 -6.0 O-succinylhomoserine sulfhydrylase compare
RR42_RS16275 -4.4 -5.2 membrane protein compare
RR42_RS17645 -4.4 -6.6 shikimate dehydrogenase compare
RR42_RS18295 -4.3 -14.0 anthranilate synthase component I compare
RR42_RS04475 -4.3 -9.1 3-phosphoshikimate 1-carboxyvinyltransferase compare
RR42_RS16270 -4.2 -9.9 sulfite reductase compare
RR42_RS30660 -4.1 -6.4 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase compare
RR42_RS19005 -3.7 -3.7 3-dehydroquinate synthase compare
RR42_RS33260 -3.7 -10.2 multidrug MFS transporter compare
RR42_RS33355 -3.6 -6.9 membrane protein compare
RR42_RS15890 -3.5 -8.9 heme biosynthesis protein HemY compare
RR42_RS07555 -3.4 -3.6 potassium transporter Kup compare
RR42_RS01845 -3.4 -2.0 glycerol-3-phosphate dehydrogenase compare
RR42_RS01290 -3.3 -6.2 thiamine biosynthesis protein ThiC compare
RR42_RS18310 -3.3 -2.8 indole-3-glycerol-phosphate synthase compare
RR42_RS30640 -3.2 -7.8 DNA mismatch repair protein MutT compare
RR42_RS04460 -3.2 -5.9 chorismate mutase compare
RR42_RS07615 -3.0 -2.9 3-ketoacyl-ACP reductase compare
RR42_RS28290 -2.9 -4.5 DNA-binding protein compare
RR42_RS16245 -2.9 -3.7 uroporphyrin-III methyltransferase compare
RR42_RS18850 -2.9 -3.1 preprotein translocase subunit TatC compare
RR42_RS16240 -2.7 -1.5 cobalamin biosynthesis protein CbiX compare
RR42_RS33250 -2.6 -8.0 tyrosine protein kinase compare
RR42_RS01920 -2.6 -4.5 protoheme IX farnesyltransferase compare
RR42_RS18300 -2.5 -3.6 anthranilate synthase subunit II compare
RR42_RS20205 -2.4 -3.9 chromosome partitioning protein compare
RR42_RS33240 -2.4 -12.8 GDP-L-fucose synthase compare
RR42_RS33210 -2.4 -6.0 teichoic acid biosynthesis protein compare
RR42_RS00940 -2.4 -10.0 biotin synthase compare
RR42_RS04700 -2.3 -1.7 ribonuclease G compare
RR42_RS18855 -2.3 -5.0 preprotein translocase compare
RR42_RS02705 -2.2 -3.0 Holliday junction DNA helicase RuvA compare
RR42_RS01775 -2.2 -8.3 glutamate--cysteine ligase compare
RR42_RS15035 -2.1 -5.3 ZIP zinc transporter compare
RR42_RS33235 -2.1 -8.1 GDP-mannose 4,6-dehydratase compare
RR42_RS17105 -2.0 -12.0 Clp protease ClpX compare
RR42_RS14360 -2.0 -1.2 tryptophan synthase subunit alpha compare
RR42_RS15000 -2.0 -3.3 GTP cyclohydrolase compare
RR42_RS06095 -2.0 -4.2 hypothetical protein compare
RR42_RS08000 -1.9 -1.7 hypothetical protein compare
RR42_RS07605 -1.9 -5.2 poly-beta-hydroxybutyrate polymerase compare
RR42_RS12040 -1.8 -8.2 MFS transporter compare
RR42_RS17880 -1.8 -1.5 hypothetical protein compare
RR42_RS33245 -1.8 -8.0 mannose-1-phosphate guanyltransferase compare
RR42_RS15775 -1.8 -6.7 N-acetylneuraminate synthase compare
RR42_RS15895 -1.8 -5.8 uroporphyrinogen III methyltransferase compare
RR42_RS02045 -1.7 -9.6 GTPase compare
RR42_RS11770 -1.7 -2.6 cyclase compare
RR42_RS23515 -1.7 -6.1 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase compare
RR42_RS17055 -1.6 -7.7 LuxR family transcriptional regulator compare
RR42_RS35875 -1.6 -8.1 UDP-galactose-4-epimerase compare
RR42_RS15050 -1.6 -8.8 DNA polymerase I compare
RR42_RS07565 -1.6 -6.2 transcription accessory protein compare
RR42_RS08945 -1.6 -1.7 hypothetical protein compare
RR42_RS02380 -1.6 -6.4 FAD-linked oxidase compare
RR42_RS17060 -1.5 -11.2 histidine kinase compare
RR42_RS12050 -1.5 -7.3 DNA polymerase compare
RR42_RS17050 -1.5 -4.1 phosphoribosylglycinamide formyltransferase compare
RR42_RS12305 -1.5 -1.5 hypothetical protein compare
RR42_RS19085 -1.5 -1.9 cytochrome C biogenesis protein ResB compare
RR42_RS15810 -1.5 -2.3 UDP-N-acetylglucosamine 4,6-dehydratase compare
RR42_RS04895 -1.5 -7.5 serine/threonine protein phosphatase compare
RR42_RS20570 -1.5 -2.6 biopolymer transporter ExbD compare
RR42_RS13910 -1.4 -7.2 glutamate racemase compare
RR42_RS07365 -1.4 -2.9 pyruvate dehydrogenase compare
RR42_RS33215 -1.4 -8.1 transferase compare
RR42_RS26935 -1.4 -5.0 farnesyl-diphosphate farnesyltransferase compare
RR42_RS16260 -1.4 -0.8 phosphoadenosine phosphosulfate reductase compare
RR42_RS13040 -1.3 -3.8 iron transporter compare
RR42_RS14790 -1.3 -5.4 cobalamin biosynthesis protein CobD compare
RR42_RS15410 -1.3 -5.0 membrane protein compare
RR42_RS18270 -1.3 -3.8 murein transglycosylase compare
RR42_RS00925 -1.3 -6.0 adenosylmethionine--8-amino-7-oxononanoate aminotransferase BioA compare
RR42_RS25785 -1.3 -2.6 TetR family transcriptional regulator compare
RR42_RS12550 -1.3 -4.4 hypothetical protein compare
RR42_RS21220 -1.2 -2.6 iron transporter FeoB compare
RR42_RS17730 -1.2 -3.0 hypothetical protein compare
RR42_RS15015 -1.2 -1.2 exodeoxyribonuclease VII small subunit compare
RR42_RS01915 -1.2 -5.8 cytochrome C oxidase subunit I compare
RR42_RS12590 -1.2 -1.0 50S ribosomal protein L9 compare
RR42_RS03095 -1.2 -2.0 succinyl-CoA synthetase subunit beta compare
RR42_RS00625 -1.2 -1.4 hypothetical protein compare
RR42_RS05485 -1.1 -2.0 polynucleotide phosphorylase/polyadenylase compare
RR42_RS00420 -1.1 -3.4 hypothetical protein compare
RR42_RS05955 -1.1 -1.2 hypothetical protein compare
RR42_RS15795 -1.1 -4.3 spore coat protein compare
RR42_RS27550 -1.1 -1.0 hypothetical protein compare
RR42_RS17390 -1.1 -3.2 ATP-dependent DNA helicase RecG compare
RR42_RS15415 -1.1 -2.4 membrane protein compare
RR42_RS33195 -1.1 -7.6 UDP-sugar lipid carrier transferase compare
RR42_RS16910 -1.1 -1.6 histidine utilization protein HutD compare
RR42_RS17180 -1.1 -5.1 hypothetical protein compare
RR42_RS11795 -1.1 -1.7 PEP synthetase regulatory protein compare
RR42_RS09590 -1.1 -1.3 hypothetical protein compare
RR42_RS32585 -1.1 -1.4 cytochrome C oxidase compare
RR42_RS17720 -1.1 -1.7 sugar kinase compare
RR42_RS17555 -1.0 -1.2 hypothetical protein compare
RR42_RS22590 -1.0 -1.0 organic hydroperoxide resistance protein compare
RR42_RS15460 -1.0 -4.7 translocation protein TolB compare
RR42_RS06325 -1.0 -1.6 serine O-acetyltransferase compare
RR42_RS14585 -1.0 -3.8 L-PSP family endoribonuclease compare
RR42_RS24930 -1.0 -0.9 AraC family transcriptional regulator compare
RR42_RS03080 -1.0 -2.3 recombinase RecA compare
RR42_RS31920 -1.0 -1.3 acetyl-CoA acetyltransferase compare
RR42_RS08575 -1.0 -1.0 tail protein compare
RR42_RS01875 -1.0 -3.3 cytochrome C oxidase subunit II compare
RR42_RS26925 -1.0 -1.3 membrane protein compare
RR42_RS02785 -1.0 -2.6 dimethyladenosine transferase compare
RR42_RS08715 -1.0 -3.1 LysR family transcriptional regulator compare
RR42_RS34815 -1.0 -3.7 diguanylate cyclase compare
RR42_RS06630 -1.0 -1.8 integration host factor subunit alpha compare
RR42_RS29785 -1.0 -2.2 hypothetical protein compare
RR42_RS17565 -1.0 -7.0 LysR family transcriptional regulator compare
RR42_RS08365 -1.0 -4.3 hypothetical protein compare
RR42_RS07890 -0.9 -1.9 hypothetical protein compare
RR42_RS05100 -0.9 -2.8 acetaldehyde dehydrogenase compare
RR42_RS02810 -0.9 -1.8 acyl-phosphate glycerol 3-phosphate acyltransferase compare
RR42_RS32590 -0.9 -1.2 cytochrome o ubiquinol oxidase subunit III compare
RR42_RS15770 -0.9 -4.1 hypothetical protein compare
RR42_RS22360 -0.9 -1.5 hypothetical protein compare
RR42_RS09630 -0.9 -1.2 hypothetical protein compare
RR42_RS14965 -0.9 -2.2 hypothetical protein compare
RR42_RS05920 -0.9 -3.1 HrcA family transcriptional regulator compare
RR42_RS34675 -0.9 -2.3 NADPH:quinone reductase compare
RR42_RS05420 -0.9 -3.8 membrane protein compare
RR42_RS03670 -0.9 -1.0 isochorismatase compare
RR42_RS32460 -0.9 -2.0 LysR family transcriptional regulator compare
RR42_RS04015 -0.9 -1.3 RNA polymerase sigma factor compare
RR42_RS07630 -0.9 -1.7 methyltransferase type 12 compare
RR42_RS12015 -0.9 -2.2 dihydrolipoamide acyltransferase compare
RR42_RS31975 -0.9 -1.8 fatty acid--CoA ligase compare
RR42_RS24985 -0.9 -2.2 hypothetical protein compare
RR42_RS18485 -0.9 -1.0 glutaredoxin compare
RR42_RS04735 -0.9 -1.1 hypothetical protein compare
RR42_RS06015 -0.9 -6.4 recombinase compare
RR42_RS01380 -0.9 -0.8 membrane protein compare
RR42_RS14985 -0.8 -1.2 30S ribosomal protein S21 compare
RR42_RS00830 -0.8 -3.3 cell division protein FtsN compare
RR42_RS15720 -0.8 -3.8 hypothetical protein compare
RR42_RS15090 -0.8 -2.1 DNA helicase compare
RR42_RS17970 -0.8 -1.5 hypothetical protein compare
RR42_RS17400 -0.8 -4.0 queuine tRNA-ribosyltransferase compare
RR42_RS18380 -0.8 -1.5 hypothetical protein compare
RR42_RS23370 -0.8 -2.3 flagellar motor switch protein FliN compare
RR42_RS01255 -0.8 -3.9 lauroyl acyltransferase compare
RR42_RS18930 -0.8 -2.5 BolA family transcriptional regulator compare
RR42_RS20360 -0.8 -1.4 AsnC family transcriptional regulator compare
RR42_RS06585 -0.8 -6.4 GTP pyrophosphokinase compare
RR42_RS27950 -0.8 -1.8 peptidylprolyl isomerase compare
RR42_RS02775 -0.8 -2.0 molecular chaperone SurA compare
RR42_RS18140 -0.8 -0.9 MarR family transcriptional regulator compare
RR42_RS21560 -0.8 -2.5 hypothetical protein compare
RR42_RS26450 -0.8 -2.1 histidinol dehydrogenase compare
RR42_RS00930 -0.8 -4.2 8-amino-7-oxononanoate synthase compare
RR42_RS32050 -0.8 -1.6 AraC family transcriptional regulator compare
RR42_RS02490 -0.8 -2.3 molybdopterin-guanine dinucleotide biosynthesis protein MobB compare
RR42_RS07870 -0.8 -3.3 alkyl hydroperoxide reductase compare
RR42_RS26900 -0.8 -1.7 enoyl-CoA hydratase compare
RR42_RS02310 -0.8 -2.0 NADPH-dependent 7-cyano-7-deazaguanine reductase compare
RR42_RS01720 -0.8 -1.2 membrane protein compare
RR42_RS19090 -0.8 -1.1 cytochrome C compare
RR42_RS20195 -0.8 -0.9 ATPase F0F1 compare
RR42_RS16690 -0.8 -1.3 RNA signal recognition particle 4.5S RNA compare
RR42_RS17110 -0.8 -4.6 ATP-dependent Clp protease adapter protein ClpS compare
RR42_RS06655 -0.7 -1.8 hypothetical protein compare
RR42_RS27520 -0.7 -1.6 hypothetical protein compare
RR42_RS22230 -0.7 -1.0 hypothetical protein compare
RR42_RS06545 -0.7 -1.3 thioesterase compare
RR42_RS36105 -0.7 -1.5 MarR family transcriptional regulator compare
RR42_RS26200 -0.7 -1.4 hypothetical protein compare
RR42_RS07325 -0.7 -3.1 exodeoxyribonuclease III compare
RR42_RS32870 -0.7 -1.7 stress responsive protein compare
RR42_RS15790 -0.7 -2.6 aminotransferase class III compare
RR42_RS15785 -0.7 -4.2 glycosyl transferase family 28 compare
RR42_RS08450 -0.7 -1.2 hypothetical protein compare
RR42_RS04320 -0.7 -2.7 cell division protein FtsK compare
RR42_RS31285 -0.7 -1.3 XRE family transcriptional regulator compare
RR42_RS18425 -0.7 -1.0 hypothetical protein compare
RR42_RS03170 -0.7 -2.1 hypothetical protein compare
RR42_RS35980 -0.7 -3.2 membrane protein compare
RR42_RS35450 -0.7 -1.6 hypothetical protein compare
RR42_RS18315 -0.7 -3.0 toxin compare


Specific Phenotypes

None in this experiment

For Cupriavidus basilensis FW507-4G11 in nitrogen source experiments

For nitrogen source L-Asparagine across organisms