Experiment set2IT087 for Cupriavidus basilensis FW507-4G11

Compare to:

L-Asparagine nitrogen source

200 most detrimental genes:

  gene name fitness t score description  
RR42_RS29610 +2.3 3.7 cytochrome C2 compare
RR42_RS06020 +1.4 1.9 Fe-S cluster assembly transcriptional regulator IscR compare
RR42_RS09085 +1.4 2.8 C4-dicarboxylate ABC transporter permease compare
RR42_RS19885 +1.3 2.1 aminoglycoside transporter compare
RR42_RS08185 +1.3 2.2 hypothetical protein compare
RR42_RS03020 +1.1 1.4 MarR family transcriptional regulator compare
RR42_RS04850 +1.0 1.6 hypothetical protein compare
RR42_RS12155 +1.0 3.0 molecular chaperone compare
RR42_RS34565 +1.0 3.0 GDP-mannose mannosyl hydrolase compare
RR42_RS12880 +1.0 2.2 membrane protein compare
RR42_RS36245 +1.0 4.0 excisionase compare
RR42_RS26080 +1.0 1.2 hypothetical protein compare
RR42_RS23140 +1.0 1.1 peptidylprolyl isomerase compare
RR42_RS08030 +1.0 1.9 hypothetical protein compare
RR42_RS06735 +0.9 1.6 hypothetical protein compare
RR42_RS08220 +0.9 1.5 hypothetical protein compare
RR42_RS16565 +0.9 1.8 hypothetical protein compare
RR42_RS16175 +0.9 1.7 enoyl-CoA hydratase compare
RR42_RS28005 +0.9 1.0 phosphonate/organophosphate ester transporter subunit compare
RR42_RS33695 +0.9 2.5 membrane protein compare
RR42_RS14880 +0.9 2.8 hypothetical protein compare
RR42_RS21470 +0.9 1.0 hypothetical protein compare
RR42_RS35725 +0.9 1.7 flagellar biosynthesis protein FlgB compare
RR42_RS06865 +0.9 3.3 hypothetical protein compare
RR42_RS08860 +0.8 1.9 radical SAM protein compare
RR42_RS34305 +0.8 3.6 glutamine ABC transporter ATP-binding protein compare
RR42_RS23595 +0.8 2.4 dTDP-4-dehydrorhamnose 3,5-epimerase compare
RR42_RS22180 +0.8 2.1 hypothetical protein compare
RR42_RS26875 +0.8 1.6 LysR family transcriptional regulator compare
RR42_RS26455 +0.8 1.2 amino acid ABC transporter ATP-binding protein compare
RR42_RS05260 +0.8 2.6 purine permease compare
RR42_RS32960 +0.8 1.2 2-dehydropantoate 2-reductase compare
RR42_RS04810 +0.7 2.0 glycine/betaine ABC transporter permease compare
RR42_RS19940 +0.7 3.0 heat-shock protein HtpX compare
RR42_RS03485 +0.7 2.1 type VI secretion protein compare
RR42_RS07225 +0.7 1.4 hypothetical protein compare
RR42_RS34520 +0.7 1.0 transposase compare
RR42_RS02270 +0.7 1.6 hypothetical protein compare
RR42_RS15290 +0.7 2.2 cupin compare
RR42_RS15060 +0.7 1.6 membrane protein compare
RR42_RS05700 +0.7 4.3 hypothetical protein compare
RR42_RS06240 +0.7 1.3 tryptophan--tRNA ligase compare
RR42_RS05305 +0.7 3.4 NADP oxidoreductase compare
RR42_RS25650 +0.7 1.3 hypothetical protein compare
RR42_RS05360 +0.7 2.0 membrane protein compare
RR42_RS28035 +0.7 3.7 ABC transporter substrate-binding protein compare
RR42_RS30310 +0.7 0.8 signal transduction protein compare
RR42_RS15120 +0.7 1.3 4-oxalocrotonate tautomerase compare
RR42_RS02205 +0.7 1.4 succinate dehydrogenase compare
RR42_RS04555 +0.7 2.8 phosphate ABC transporter ATP-binding protein compare
RR42_RS26220 +0.7 1.3 citrate lyase subunit beta compare
RR42_RS09555 +0.6 1.3 universal stress protein UspA compare
RR42_RS18725 +0.6 1.2 hypothetical protein compare
RR42_RS16495 +0.6 1.3 branched-chain amino acid aminotransferase compare
RR42_RS21765 +0.6 1.7 3-oxoacyl-ACP reductase compare
RR42_RS19770 +0.6 2.5 LysR family transcriptional regulator compare
RR42_RS12085 +0.6 1.9 glyoxalase compare
RR42_RS17340 +0.6 1.5 glutathione peroxidase compare
RR42_RS20810 +0.6 1.1 hypothetical protein compare
RR42_RS17745 +0.6 2.2 hypothetical protein compare
RR42_RS08585 +0.6 1.7 baseplate assembly protein compare
RR42_RS10950 +0.6 2.5 GCN5 family acetyltransferase compare
RR42_RS26050 +0.6 2.2 hypothetical protein compare
RR42_RS20945 +0.6 1.9 protein-tyrosine phosphatase compare
RR42_RS23460 +0.6 1.3 alpha/beta hydrolase compare
RR42_RS25640 +0.6 1.2 3-hydroxyisobutyrate dehydrogenase compare
RR42_RS05945 +0.6 1.5 thioredoxin compare
RR42_RS13730 +0.6 1.3 TetR family transcriptional regulator compare
RR42_RS08770 +0.6 0.7 2-nitropropane dioxygenase compare
RR42_RS15080 +0.6 1.1 GntR family transcriptional regulator compare
RR42_RS17805 +0.6 0.7 hypothetical protein compare
RR42_RS05755 +0.6 1.0 enoyl-CoA hydratase compare
RR42_RS17495 +0.6 1.7 hypothetical protein compare
RR42_RS06445 +0.6 2.0 NAD(P)H-quinone oxidoreductase compare
RR42_RS16580 +0.6 2.3 hypothetical protein compare
RR42_RS20370 +0.6 0.5 pterin-4-alpha-carbinolamine dehydratase compare
RR42_RS33145 +0.6 1.3 hypothetical protein compare
RR42_RS19830 +0.6 1.3 LysR family transcriptional regulator compare
RR42_RS03015 +0.6 2.5 enoyl-CoA hydratase compare
RR42_RS09360 +0.6 1.8 alpha/beta hydrolase compare
RR42_RS07140 +0.6 0.9 hypothetical protein compare
RR42_RS18945 +0.6 2.1 toluene tolerance protein compare
RR42_RS26950 +0.6 2.0 bacterioferritin compare
RR42_RS10855 +0.5 0.7 diguanylate phosphodiesterase compare
RR42_RS28425 +0.5 1.5 3-hydroxybutyryl-CoA dehydratase compare
RR42_RS00385 +0.5 1.2 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase compare
RR42_RS11410 +0.5 1.2 hypothetical protein compare
RR42_RS04380 +0.5 1.9 LysR family transcriptional regulator compare
RR42_RS15845 +0.5 1.2 biotin transporter BioY compare
RR42_RS06785 +0.5 1.4 hypothetical protein compare
RR42_RS18510 +0.5 1.7 AsnC family transcriptional regulator compare
RR42_RS11240 +0.5 2.5 D-aminoacylase compare
RR42_RS15375 +0.5 1.7 AsnC family transcriptional regulator compare
RR42_RS23305 +0.5 0.8 hypothetical protein compare
RR42_RS04560 +0.5 2.3 methionine ABC transporter permease compare
RR42_RS08025 +0.5 0.7 phage Gp37Gp68 compare
RR42_RS33940 +0.5 2.2 naphthalene 1,2-dioxygenase compare
RR42_RS31685 +0.5 2.6 Asp/Glu/hydantoin racemase compare
RR42_RS17665 +0.5 1.0 chorismate lyase compare
RR42_RS09575 +0.5 2.2 hypothetical protein compare
RR42_RS37245 +0.5 2.3 MazF family transcriptional regulator compare
RR42_RS26485 +0.5 1.7 2,5-dihydroxypyridine 5,6-dioxygenase compare
RR42_RS15875 +0.5 2.5 hypothetical protein compare
RR42_RS30345 +0.5 2.0 XRE family transcriptional regulator compare
RR42_RS19760 +0.5 2.3 hypothetical protein compare
RR42_RS07200 +0.5 1.2 hypothetical protein compare
RR42_RS31135 +0.5 1.3 hypothetical protein compare
RR42_RS00360 +0.5 1.3 Asp/Glu/hydantoin racemase compare
RR42_RS05460 +0.5 1.9 peptidase M23 compare
RR42_RS16575 +0.5 1.4 acyl-CoA dehydrogenase compare
RR42_RS00195 +0.5 2.1 ABC transporter permease compare
RR42_RS34185 +0.5 1.2 hypothetical protein compare
RR42_RS00440 +0.5 0.4 hypothetical protein compare
RR42_RS27320 +0.5 1.0 ferredoxin compare
RR42_RS13130 +0.5 1.1 membrane protein compare
RR42_RS36450 +0.5 1.0 acyl dehydratase compare
RR42_RS31505 +0.5 1.1 hypothetical protein compare
RR42_RS29425 +0.5 2.1 enoyl-CoA hydratase compare
RR42_RS26620 +0.5 1.5 hypothetical protein compare
RR42_RS00380 +0.5 2.6 GntR family transcriptional regulator compare
RR42_RS08465 +0.5 1.5 hypothetical protein compare
RR42_RS25015 +0.5 1.2 gluconolactonase compare
RR42_RS03765 +0.5 2.4 formate dehydrogenase compare
RR42_RS13655 +0.5 1.5 glyoxalase compare
RR42_RS10020 +0.5 1.8 4-methylmuconolactone methylisomerase compare
RR42_RS23480 +0.5 2.2 3-keto-5-aminohexanoate cleavage protein compare
RR42_RS23185 +0.5 2.9 membrane protein compare
RR42_RS13860 +0.5 2.1 hypothetical protein compare
RR42_RS27440 +0.5 2.4 hypothetical protein compare
RR42_RS28360 +0.5 1.3 endoribonuclease L-PSP compare
RR42_RS16640 +0.5 1.0 LysR family transcriptional regulator compare
RR42_RS01690 +0.5 1.5 ferredoxin compare
RR42_RS06710 +0.5 1.2 hypothetical protein compare
RR42_RS04000 +0.5 2.4 (2Fe-2S)-binding protein compare
RR42_RS22040 +0.5 2.5 Hcp family T6SS protein CtsH1 compare
RR42_RS20410 +0.5 2.7 transporter compare
RR42_RS26555 +0.5 0.9 tRNA-Met compare
RR42_RS06700 +0.5 1.5 hypothetical protein compare
RR42_RS16360 +0.5 0.9 transposase compare
RR42_RS03940 +0.5 0.7 membrane protein compare
RR42_RS32720 +0.5 1.9 glyoxalase compare
RR42_RS21625 +0.5 2.6 6-hydroxynicotinate 3-monooxygenase compare
RR42_RS28395 +0.5 2.5 DNA-binding protein compare
RR42_RS15245 +0.5 1.0 alpha/beta hydrolase compare
RR42_RS19870 +0.5 1.9 pyruvate kinase compare
RR42_RS22205 +0.5 2.1 arabinose ABC transporter permease compare
RR42_RS03010 +0.5 1.2 acetyl-CoA acetyltransferase compare
RR42_RS02805 +0.5 2.2 metal-dependent hydrolase compare
RR42_RS15755 +0.5 1.0 acetyltransferase compare
RR42_RS09835 +0.5 1.1 chemotaxis protein compare
RR42_RS03505 +0.5 1.5 replication/virulence associated protein compare
RR42_RS03910 +0.5 1.3 (2Fe-2S)-binding protein compare
RR42_RS20260 +0.5 1.5 hypothetical protein compare
RR42_RS31605 +0.5 2.1 permease compare
RR42_RS11490 +0.5 1.6 MBL fold metallo-hydrolase compare
RR42_RS28350 +0.4 2.2 phthalate 4,5-dioxygenase compare
RR42_RS35140 +0.4 1.1 2-hydroxylaminobenzoate mutase compare
RR42_RS05780 +0.4 1.2 hypothetical protein compare
RR42_RS29630 +0.4 1.3 hypothetical protein compare
RR42_RS30195 +0.4 1.8 MarR family transcriptional regulator compare
RR42_RS22605 +0.4 1.4 hypothetical protein compare
RR42_RS09710 +0.4 1.6 hypothetical protein compare
RR42_RS28235 +0.4 1.7 hydrolase compare
RR42_RS32945 +0.4 1.7 hypothetical protein compare
RR42_RS06125 +0.4 1.8 phosphogluconate dehydratase compare
RR42_RS32195 +0.4 1.8 hypothetical protein compare
RR42_RS11440 +0.4 2.2 cytochrome Cbb3 compare
RR42_RS25120 +0.4 1.5 IclR family transcriptional regulator compare
RR42_RS25100 +0.4 2.1 dehydratase compare
RR42_RS25115 +0.4 1.7 IclR family transcriptional regulator compare
RR42_RS07090 +0.4 1.5 hypothetical protein compare
RR42_RS30405 +0.4 2.3 GntR family transcriptional regulator compare
RR42_RS27030 +0.4 2.2 hypothetical protein compare
RR42_RS35530 +0.4 2.1 hypothetical protein compare
RR42_RS26730 +0.4 1.4 Fe-S oxidoreductase compare
RR42_RS05865 +0.4 1.3 hypothetical protein compare
RR42_RS26540 +0.4 0.6 3-phosphoglycerate dehydrogenase compare
RR42_RS08245 +0.4 0.5 hypothetical protein compare
RR42_RS08980 +0.4 1.2 hypothetical protein compare
RR42_RS16125 +0.4 1.7 Cob(I)yrinic acid a,c-diamide adenosyltransferase compare
RR42_RS32710 +0.4 0.9 hypothetical protein compare
RR42_RS37115 +0.4 1.1 hypothetical protein compare
RR42_RS04170 +0.4 2.3 bactoprenol glucosyl transferase compare
RR42_RS24880 +0.4 1.9 hypothetical protein compare
RR42_RS06855 +0.4 1.3 hypothetical protein compare
RR42_RS04610 +0.4 2.1 hypothetical protein compare
RR42_RS15225 +0.4 0.7 RNA-binding protein compare
RR42_RS06250 +0.4 0.7 dihydrodipicolinate synthase compare
RR42_RS27765 +0.4 1.1 haloacid dehalogenase compare
RR42_RS23250 +0.4 1.2 glyoxalase compare
RR42_RS14760 +0.4 1.4 molybdenum cofactor biosynthesis protein MogA compare
RR42_RS29985 +0.4 2.3 transposase compare
RR42_RS27810 +0.4 2.4 ABC transporter permease compare
RR42_RS12370 +0.4 1.4 trans-aconitate methyltransferase compare
RR42_RS31950 +0.4 1.4 ketoacid CoA transferase compare
RR42_RS04065 +0.4 1.4 LysR family transcriptional regulator compare
RR42_RS37120 +0.4 2.2 acetyltransferase compare
RR42_RS05965 +0.4 1.0 malonic semialdehyde reductase compare
RR42_RS18545 +0.4 1.3 short-chain dehydrogenase compare
RR42_RS13865 +0.4 0.6 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Cupriavidus basilensis FW507-4G11 in nitrogen source experiments

For nitrogen source L-Asparagine across organisms