Experiment set2IT087 for Burkholderia phytofirmans PsJN

Compare to:

inner cut, LB soft agar motility assay

200 most important genes:

  gene name fitness t score description  
BPHYT_RS14865 -6.6 -3.6 UDP-glucose 6-dehydrogenase compare
BPHYT_RS15075 -6.1 -2.8 dihydrokaempferol 4-reductase compare
BPHYT_RS08850 -5.3 -2.8 transcriptional regulator compare
BPHYT_RS18895 -4.7 -5.6 flagellar basal body rod protein FlgB compare
BPHYT_RS14400 -4.6 -3.3 anti-sigma factor compare
BPHYT_RS16710 -4.5 -1.7 LysR family transcriptional regulator compare
BPHYT_RS04370 -4.5 -2.1 glycosyl transferase compare
BPHYT_RS02865 -4.4 -4.3 hypothetical protein compare
BPHYT_RS16175 -4.4 -3.3 hemolysin D compare
BPHYT_RS01625 -4.4 -4.6 chemotaxis protein CheY compare
BPHYT_RS19085 -4.3 -10.3 flagellin compare
BPHYT_RS15710 -4.2 -2.9 ATP-dependent Clp protease ATP-binding protein compare
BPHYT_RS09515 -4.2 -6.2 phosphoribosylformylglycinamidine synthase compare
BPHYT_RS18910 -4.1 -2.4 FlgN compare
BPHYT_RS16255 -4.1 -4.8 phosphoribosylaminoimidazole-succinocarboxamide synthase compare
BPHYT_RS18970 -4.1 -14.7 chemotaxis protein compare
BPHYT_RS23840 -3.9 -4.7 methyltransferase compare
BPHYT_RS06530 -3.9 -1.4 membrane protein compare
BPHYT_RS16840 -3.9 -2.7 transketolase compare
BPHYT_RS18790 -3.9 -9.1 ATP synthase compare
BPHYT_RS18785 -3.8 -2.0 flagellar assembly protein FliH compare
BPHYT_RS14855 -3.8 -3.0 ADP-L-glycero-D-manno-heptose-6-epimerase compare
BPHYT_RS18855 -3.6 -6.9 flagellar rod assembly protein FlgJ compare
BPHYT_RS02965 -3.6 -3.4 membrane protein compare
BPHYT_RS14395 -3.5 -8.5 sugar dehydratase compare
BPHYT_RS09315 -3.5 -1.3 chemotaxis protein CheY compare
BPHYT_RS04290 -3.5 -2.7 glycosyl transferase family 2 compare
BPHYT_RS18885 -3.5 -4.7 flagellar basal body rod modification protein FlgD compare
BPHYT_RS18800 -3.4 -6.0 flagellar hook-length control protein compare
BPHYT_RS18765 -3.4 -7.0 flagellar biosynthesis protein FliS compare
BPHYT_RS18865 -3.4 -3.9 flagellar L-ring protein FlgH compare
BPHYT_RS33515 -3.4 -8.2 porin compare
BPHYT_RS18845 -3.4 -14.2 flagellar hook-associated protein FlgK conserved
BPHYT_RS18830 -3.4 -9.3 flagellar biosynthesis protein FliQ compare
BPHYT_RS17520 -3.3 -7.2 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase compare
BPHYT_RS23270 -3.2 -1.7 enoyl-CoA hydratase compare
BPHYT_RS09500 -3.2 -6.1 glucose-6-phosphate isomerase compare
BPHYT_RS06175 -3.2 -5.8 LPS biosynthesis compare
BPHYT_RS01485 -3.2 -1.2 histidine kinase compare
BPHYT_RS18840 -3.1 -8.7 flagellar hook-associated protein FlgL compare
BPHYT_RS19115 -3.1 -3.1 acyl carrier protein compare
BPHYT_RS24315 -3.1 -3.0 phosphoribosyltransferase compare
BPHYT_RS18900 -3.1 -13.1 flagella basal body P-ring formation protein FlgA compare
BPHYT_RS01795 -3.0 -6.7 histidine kinase compare
BPHYT_RS19010 -3.0 -4.9 flagellar motor protein MotB conserved
BPHYT_RS18870 -3.0 -5.9 flagellar basal body rod protein FlgG compare
BPHYT_RS18935 -3.0 -11.1 flagellar biosynthesis regulator FlhF compare
BPHYT_RS18795 -2.9 -5.9 flagellar export protein FliJ compare
BPHYT_RS18775 -2.9 -12.3 flagellar M-ring protein FliF compare
BPHYT_RS12465 -2.9 -3.4 inositol monophosphatase compare
BPHYT_RS18880 -2.9 -9.6 flagellar hook protein FlgE compare
BPHYT_RS19015 -2.9 -10.3 flagellar motor protein MotA conserved
BPHYT_RS18875 -2.9 -5.4 flagellar basal body rod protein FlgF compare
BPHYT_RS01790 -2.9 -11.3 LuxR family transcriptional regulator compare
BPHYT_RS16215 -2.9 -6.3 sensor histidine kinase compare
BPHYT_RS19105 -2.9 -10.8 aminotransferase compare
BPHYT_RS18810 -2.8 -7.6 flagellar motor switch protein FliM compare
BPHYT_RS19100 -2.8 -11.9 hypothetical protein compare
BPHYT_RS11705 -2.8 -1.4 hypothetical protein compare
BPHYT_RS04285 -2.8 -2.3 rhamnosyltransferase compare
BPHYT_RS06190 -2.8 -4.4 heptosyltransferase compare
BPHYT_RS18825 -2.7 -6.6 flagellar biosynthesis protein FliP compare
BPHYT_RS16675 -2.7 -2.5 dihydroorotase compare
BPHYT_RS19125 -2.7 -4.7 short-chain dehydrogenase compare
BPHYT_RS03655 -2.7 -1.7 membrane protein compare
BPHYT_RS18995 -2.7 -5.6 purine-binding chemotaxis protein compare
BPHYT_RS16245 -2.6 -5.4 phosphoribosylaminoimidazole carboxylase compare
BPHYT_RS18890 -2.6 -5.2 flagellar basal body rod protein FlgC compare
BPHYT_RS19130 -2.5 -4.2 acetyltransferase compare
BPHYT_RS18805 -2.5 -4.8 flagellar basal body protein FliL compare
BPHYT_RS02130 -2.5 -4.5 hydroxymethylglutaryl-CoA lyase compare
BPHYT_RS08960 -2.5 -1.8 threonine synthase compare
BPHYT_RS36000 -2.5 -2.8 hypothetical protein compare
BPHYT_RS18925 -2.5 -5.5 RNA polymerase sigma70 compare
BPHYT_RS12615 -2.4 -1.8 dihydrodipicolinate synthase compare
BPHYT_RS18860 -2.4 -4.2 flagellar P-ring protein FlgI compare
BPHYT_RS18945 -2.4 -6.9 flagellar biosynthesis protein FlhB compare
BPHYT_RS02975 -2.4 -3.0 membrane protein compare
BPHYT_RS16835 -2.3 -5.4 glyceraldehyde-3-phosphate dehydrogenase compare
BPHYT_RS18940 -2.3 -6.4 flagellar biosynthesis protein FlhA compare
BPHYT_RS02285 -2.3 -7.0 cell division protein compare
BPHYT_RS19000 -2.3 -7.2 chemotaxis protein CheA compare
BPHYT_RS02525 -2.3 -10.2 membrane protein compare
BPHYT_RS13245 -2.3 -5.2 hypothetical protein compare
BPHYT_RS20235 -2.2 -7.9 iron ABC transporter compare
BPHYT_RS17165 -2.2 -5.0 cell division protein ZapD compare
BPHYT_RS06685 -2.2 -2.5 NADH:ubiquinone oxidoreductase subunit M compare
BPHYT_RS17945 -2.2 -2.1 cytochrome C biogenesis protein compare
BPHYT_RS02590 -2.2 -7.2 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase compare
BPHYT_RS13605 -2.1 -1.1 tRNA-Pro compare
BPHYT_RS06325 -2.1 -4.1 ATPase compare
BPHYT_RS18980 -2.1 -7.4 chemotaxis protein CheR compare
BPHYT_RS16340 -2.1 -7.3 succinyl-CoA synthetase subunit alpha compare
BPHYT_RS16270 -2.1 -5.6 phosphoglycerate kinase compare
BPHYT_RS15620 -2.1 -2.6 peptidyl-prolyl cis-trans isomerase compare
BPHYT_RS19120 -2.1 -3.4 3-oxoacyl-ACP synthase compare
BPHYT_RS18340 -2.1 -2.1 n-acetyl-gamma-glutamyl-phosphate reductase compare
BPHYT_RS04335 -2.1 -2.2 membrane protein compare
BPHYT_RS09620 -2.0 -3.4 aminodeoxychorismate lyase compare
BPHYT_RS33535 -2.0 -16.0 RNA polymerase sigma factor RpoD compare
BPHYT_RS15615 -2.0 -4.2 4-hydroxy-3-methylbut-2-enyl diphosphate reductase compare
BPHYT_RS35835 -2.0 -3.7 hypothetical protein compare
BPHYT_RS12925 -2.0 -1.3 exodeoxyribonuclease III compare
BPHYT_RS31950 -2.0 -2.4 short-chain dehydrogenase compare
BPHYT_RS08565 -1.9 -1.6 dihydroorotate dehydrogenase compare
BPHYT_RS34815 -1.9 -1.9 ABC transporter compare
BPHYT_RS18610 -1.9 -7.0 lytic transglycosylase compare
BPHYT_RS14255 -1.9 -13.3 ABC transporter compare
BPHYT_RS22360 -1.9 -3.3 response regulator receiver compare
BPHYT_RS34805 -1.9 -5.9 ABC transporter compare
BPHYT_RS17240 -1.9 -1.3 cell division protein FtsW compare
BPHYT_RS06375 -1.9 -4.7 ribonuclease compare
BPHYT_RS19025 -1.9 -4.3 transcriptional regulator compare
BPHYT_RS17860 -1.9 -3.9 transposase compare
BPHYT_RS16345 -1.9 -5.6 succinyl-CoA ligase [ADP-forming] subunit beta compare
BPHYT_RS06320 -1.8 -2.3 chemotaxis protein CheY compare
BPHYT_RS17530 -1.8 -7.3 3-octaprenyl-4-hydroxybenzoate carboxy-lyase compare
BPHYT_RS11535 -1.8 -4.7 membrane protein compare
BPHYT_RS03640 -1.8 -3.8 phosphoribosylformylglycinamidine cyclo-ligase compare
BPHYT_RS06410 -1.7 -2.8 transcriptional regulator compare
BPHYT_RS01455 -1.7 -1.0 peptide deformylase compare
BPHYT_RS03725 -1.7 -1.6 serine hydroxymethyltransferase compare
BPHYT_RS33890 -1.7 -7.1 fimbrial protein FimV compare
BPHYT_RS16130 -1.7 -4.2 cation ABC transporter substrate-binding protein compare
BPHYT_RS17100 -1.7 -6.4 RNA pyrophosphohydrolase compare
BPHYT_RS05615 -1.7 -1.5 hypothetical protein compare
BPHYT_RS24630 -1.7 -2.8 (2Fe-2S)-binding protein compare
BPHYT_RS01630 -1.7 -3.0 ATP-dependent protease ATPase subunit HslU compare
BPHYT_RS01620 -1.7 -7.2 sensor histidine kinase compare
BPHYT_RS33920 -1.6 -5.7 type II citrate synthase compare
BPHYT_RS18590 -1.6 -1.0 hypothetical protein compare
BPHYT_RS04455 -1.6 -1.3 glycosyl transferase compare
BPHYT_RS23940 -1.6 -1.6 GntR family transcriptional regulator compare
BPHYT_RS08235 -1.6 -1.0 nucleoprotein, Hfg, host factor I compare
BPHYT_RS10095 -1.6 -1.7 integrase compare
BPHYT_RS31840 -1.6 -2.3 anhydrase compare
BPHYT_RS34810 -1.6 -4.7 RND transporter compare
BPHYT_RS34360 -1.6 -4.0 methyl-accepting chemotaxis protein conserved
BPHYT_RS02860 -1.6 -1.2 membrane protein compare
BPHYT_RS19565 -1.6 -8.1 gamma-glutamyl:cysteine ligase compare
BPHYT_RS24500 -1.6 -1.8 histidine kinase compare
BPHYT_RS03455 -1.6 -1.6 paraquat-inducible protein A compare
BPHYT_RS03400 -1.5 -1.0 ATP-dependent DNA helicase RecG compare
BPHYT_RS18780 -1.5 -2.9 flagellar motor switch protein FliG compare
BPHYT_RS09480 -1.5 -1.4 peptidyl-prolyl cis-trans isomerase compare
BPHYT_RS06195 -1.5 -2.2 membrane protein compare
BPHYT_RS06350 -1.5 -1.9 chemotaxis protein CheY compare
BPHYT_RS14250 -1.5 -7.9 glycosyl transferase compare
BPHYT_RS19110 -1.5 -4.4 3-oxoacyl-ACP synthase compare
BPHYT_RS06405 -1.5 -4.4 phosphoribosylamine--glycine ligase compare
BPHYT_RS04595 -1.5 -1.6 cytoplasmic protein compare
BPHYT_RS16135 -1.5 -6.5 ABC transporter ATP-binding protein compare
BPHYT_RS16210 -1.5 -2.1 peptidase compare
BPHYT_RS06535 -1.5 -2.5 membrane protein compare
BPHYT_RS23650 -1.5 -0.9 hypothetical protein compare
BPHYT_RS20245 -1.4 -5.6 iron ABC transporter substrate-binding protein compare
BPHYT_RS17035 -1.4 -3.7 sugar kinase compare
BPHYT_RS12060 -1.4 -2.0 hypothetical protein compare
BPHYT_RS15415 -1.4 -9.0 3-octaprenyl-4-hydroxybenzoate carboxy-lyase compare
BPHYT_RS35310 -1.4 -1.8 GCN5 family N-acetyltransferase compare
BPHYT_RS06610 -1.4 -1.5 triosephosphate isomerase compare
BPHYT_RS17885 -1.4 -5.2 3-dehydroquinate synthase compare
BPHYT_RS21495 -1.4 -1.1 ABC transporter compare
BPHYT_RS14245 -1.4 -1.4 membrane protein compare
BPHYT_RS35005 -1.4 -4.3 molecular chaperone DnaJ compare
BPHYT_RS18930 -1.4 -2.8 flagellar biosynthesis protein FlhG compare
BPHYT_RS07320 -1.4 -1.5 dihydrodipicolinate synthetase compare
BPHYT_RS34780 -1.4 -3.7 phytoene synthase compare
BPHYT_RS02415 -1.4 -4.3 cytochrome C550 compare
BPHYT_RS02005 -1.4 -2.2 diguanylate phosphodiesterase compare
BPHYT_RS17920 -1.4 -1.3 protein CyaY compare
BPHYT_RS14550 -1.4 -1.0 tRNA-Asn compare
BPHYT_RS05190 -1.4 -3.5 ADP-heptose--LPS heptosyltransferase compare
BPHYT_RS35235 -1.3 -2.8 amino acid transporter compare
BPHYT_RS08525 -1.3 -1.1 SAM-dependent methyltransferase compare
BPHYT_RS03685 -1.3 -3.3 Tol system periplasmic component YbgF compare
BPHYT_RS01425 -1.3 -3.2 3-phosphoglycerate dehydrogenase compare
BPHYT_RS14450 -1.3 -4.8 hypothetical protein compare
BPHYT_RS14755 -1.3 -2.9 tRNA (guanine-N(1)-)-methyltransferase compare
BPHYT_RS02180 -1.3 -1.6 hypothetical protein compare
BPHYT_RS10850 -1.3 -1.1 LysR family transcriptional regulator compare
BPHYT_RS18415 -1.3 -2.5 hypothetical protein compare
BPHYT_RS11155 -1.3 -1.1 hypothetical protein compare
BPHYT_RS01435 -1.3 -10.7 LysR family transcriptional regulator compare
BPHYT_RS19570 -1.3 -8.4 sodium/hydrogen exchanger compare
BPHYT_RS04955 -1.3 -2.0 methionyl-tRNA synthetase compare
BPHYT_RS23570 -1.2 -5.3 chemotaxis protein CheY compare
BPHYT_RS26855 -1.2 -2.2 carboxyvinyl-carboxyphosphonate phosphorylmutase compare
BPHYT_RS25845 -1.2 -1.1 RND transporter MFP subunit compare
BPHYT_RS29920 -1.2 -1.0 hypothetical protein compare
BPHYT_RS33645 -1.2 -3.6 homoserine kinase compare
BPHYT_RS35385 -1.2 -3.0 GntR family transcriptional regulator compare
BPHYT_RS07760 -1.2 -1.4 diguanylate phosphodiesterase compare
BPHYT_RS24565 -1.2 -3.0 membrane protein compare
BPHYT_RS04385 -1.2 -2.3 nucleoside-diphosphate sugar oxidoreductase compare
BPHYT_RS06990 -1.2 -1.3 membrane protein compare
BPHYT_RS17680 -1.2 -2.1 imidazole glycerol phosphate synthase subunit HisF compare
BPHYT_RS36005 -1.2 -3.4 hypothetical protein compare
BPHYT_RS15290 -1.2 -1.7 tRNA-Arg compare
BPHYT_RS19305 -1.2 -4.8 ATP-dependent DNA helicase Rep compare


Specific Phenotypes

For 5 genes in this experiment

For motility Agar in Burkholderia phytofirmans PsJN

For motility Agar across organisms