Experiment set2IT087 for Burkholderia phytofirmans PsJN

Compare to:

inner cut, LB soft agar motility assay

200 most detrimental genes:

  gene name fitness t score description  
BPHYT_RS13080 +1.9 2.2 hypothetical protein compare
BPHYT_RS14140 +1.9 3.4 phosphate transporter permease subunit PstC compare
BPHYT_RS26570 +1.8 2.3 5'-nucleotidase compare
BPHYT_RS10135 +1.6 2.2 hypothetical protein compare
BPHYT_RS25980 +1.4 1.7 urea carboxylase compare
BPHYT_RS26955 +1.4 1.5 succinylglutamate desuccinylase compare
BPHYT_RS13555 +1.4 2.6 acyl-CoA dehydrogenase compare
BPHYT_RS13645 +1.4 10.3 threonine--tRNA ligase compare
BPHYT_RS27330 +1.4 2.1 hypothetical protein compare
BPHYT_RS35215 +1.4 1.3 dehydrogenase compare
BPHYT_RS14740 +1.3 7.9 threonine-phosphate decarboxylase compare
BPHYT_RS13835 +1.3 1.7 S-adenosylhomocysteine nucleosidase compare
BPHYT_RS15325 +1.3 2.5 ribonuclease PH compare
BPHYT_RS26975 +1.3 1.8 L-lactate dehydrogenase, LldE subunit (from data) compare
BPHYT_RS13320 +1.2 1.4 allantoate amidohydrolase compare
BPHYT_RS15305 +1.2 4.9 guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase compare
BPHYT_RS19985 +1.2 1.4 CoA-transferase compare
BPHYT_RS26040 +1.2 2.3 cysteine hydrolase compare
BPHYT_RS16090 +1.2 1.6 hypothetical protein compare
BPHYT_RS25210 +1.2 1.3 drug:proton antiporter compare
BPHYT_RS18420 +1.1 2.2 hypothetical protein compare
BPHYT_RS14135 +1.1 4.8 phosphate transporter permease subunit PtsA compare
BPHYT_RS35770 +1.1 1.8 glyoxalase compare
BPHYT_RS26960 +1.1 3.2 LysR family transcriptional regulator compare
BPHYT_RS11400 +1.1 1.7 hypothetical protein compare
BPHYT_RS08335 +1.1 1.3 hypothetical protein compare
BPHYT_RS36220 +1.1 1.8 hypothetical protein compare
BPHYT_RS20725 +1.1 1.5 histidine kinase compare
BPHYT_RS10400 +1.1 1.3 taurine ABC transporter permease compare
BPHYT_RS27250 +1.1 1.6 NAD-dependent epimerase/dehydratase compare
BPHYT_RS11500 +1.0 1.5 ABC transporter permease compare
BPHYT_RS11960 +1.0 1.4 MarR family transcriptional regulator compare
BPHYT_RS25075 +1.0 1.4 AraC family transcriptional regulator compare
BPHYT_RS22470 +1.0 1.4 hydrolase compare
BPHYT_RS22835 +1.0 1.1 flagellar motor protein MotA compare
BPHYT_RS05585 +1.0 2.2 hypothetical protein compare
BPHYT_RS32335 +1.0 0.9 AsnC family transcriptional regulator compare
BPHYT_RS01985 +1.0 2.3 hypothetical protein compare
BPHYT_RS35980 +1.0 4.2 hypothetical protein compare
BPHYT_RS13470 +1.0 1.0 arylsulfate sulfotransferase compare
BPHYT_RS24040 +0.9 4.1 amino acid ABC transporter compare
BPHYT_RS22815 +0.9 1.2 TonB-denpendent receptor compare
BPHYT_RS26950 +0.9 2.9 MFS transporter compare
BPHYT_RS31440 +0.9 2.0 hypothetical protein compare
BPHYT_RS24955 +0.9 2.2 cytochrome C peroxidase compare
BPHYT_RS07480 +0.9 1.4 FAD-dependent oxidoreductase compare
BPHYT_RS14790 +0.9 2.7 D-amino acid dehydrogenase compare
BPHYT_RS28190 +0.9 2.2 porin compare
BPHYT_RS15585 +0.9 1.2 acetyltransferase compare
BPHYT_RS19895 +0.9 1.9 rod shape-determining protein RodA compare
BPHYT_RS22325 +0.9 1.6 histidine kinase compare
BPHYT_RS02710 +0.9 1.1 hypothetical protein compare
BPHYT_RS33820 +0.9 5.3 histidine kinase compare
BPHYT_RS16180 +0.9 0.9 TetR family transcriptional regulator compare
BPHYT_RS23875 +0.9 1.2 sugar ABC transporter ATP-binding protein compare
BPHYT_RS32240 +0.9 1.2 chromosome replication initiation inhibitor protein compare
BPHYT_RS36555 +0.9 4.7 hypothetical protein compare
BPHYT_RS05235 +0.9 1.2 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase compare
BPHYT_RS02660 +0.9 1.0 membrane protein compare
BPHYT_RS20465 +0.9 1.7 LysR family transcriptional regulator compare
BPHYT_RS35480 +0.9 1.1 salicylyl-CoA 5-hydroxylase compare
BPHYT_RS03625 +0.9 3.8 Histidinol-phosphatase (EC:3.1.3.15) (from data) compare
BPHYT_RS11095 +0.8 2.5 glycosyl transferase compare
BPHYT_RS26530 +0.8 2.0 amino acid dehydrogenase compare
BPHYT_RS05245 +0.8 2.5 hypothetical protein compare
BPHYT_RS20120 +0.8 1.6 porin compare
BPHYT_RS24010 +0.8 2.4 L-histidine ABC transporter, permease component 2 (from data) compare
BPHYT_RS28245 +0.8 1.7 MFS transporter compare
BPHYT_RS26910 +0.8 1.2 hypothetical protein compare
BPHYT_RS02100 +0.8 1.2 AsnC family transcriptional regulator compare
BPHYT_RS34185 +0.8 3.2 cold-shock protein compare
BPHYT_RS06105 +0.8 1.0 hypothetical protein compare
BPHYT_RS12160 +0.8 2.7 peptide deformylase compare
BPHYT_RS34530 +0.8 1.8 LysR family transcriptional regulator compare
BPHYT_RS07925 +0.8 1.7 glutamine amidotransferase compare
BPHYT_RS33905 +0.8 1.4 3-isopropylmalate dehydratase small subunit compare
BPHYT_RS08190 +0.8 1.0 type II secretion system protein compare
BPHYT_RS21650 +0.8 1.9 cobalamin synthesis protein P47K compare
BPHYT_RS36150 +0.8 2.1 hypothetical protein compare
BPHYT_RS07080 +0.8 1.5 glutathione S-transferase compare
BPHYT_RS07920 +0.8 1.6 hypothetical protein compare
BPHYT_RS13275 +0.8 2.7 methyltransferase compare
BPHYT_RS21160 +0.8 2.6 NAD(P) transhydrogenase subunit beta compare
BPHYT_RS07935 +0.8 1.3 Rrf2 family transcriptional regulator compare
BPHYT_RS24690 +0.8 3.0 ionic transporter y4hA compare
BPHYT_RS11555 +0.8 2.1 allantoinase compare
BPHYT_RS20355 +0.8 2.3 ABC transporter substrate-binding protein compare
BPHYT_RS31460 +0.8 1.9 hypothetical protein compare
BPHYT_RS22390 +0.8 1.7 glycine/betaine ABC transporter substrate-binding protein compare
BPHYT_RS11245 +0.8 1.9 ATPase compare
BPHYT_RS33170 +0.8 0.9 acetyltransferase compare
BPHYT_RS13420 +0.8 2.9 hypothetical protein compare
BPHYT_RS31790 +0.8 3.4 methyl-accepting chemotaxis sensory transducer compare
BPHYT_RS05895 +0.8 1.3 hypothetical protein compare
BPHYT_RS32210 +0.7 0.4 hypothetical protein compare
BPHYT_RS27980 +0.7 2.3 ABC transporter substrate-binding protein compare
BPHYT_RS31030 +0.7 2.2 tyrosine protein kinase compare
BPHYT_RS22320 +0.7 1.3 hypothetical protein compare
BPHYT_RS26965 +0.7 1.1 L-lactate dehydrogenase, LldG subunit (from data) compare
BPHYT_RS24065 +0.7 2.4 glucose-methanol-choline oxidoreductase compare
BPHYT_RS07465 +0.7 1.6 FAD-dependent pyridine nucleotide-disulfide oxidoreductase compare
BPHYT_RS25830 +0.7 1.9 sugar ABC transporter substrate-binding protein compare
BPHYT_RS00750 +0.7 1.1 SpoVT/AbrB domain-containing protein compare
BPHYT_RS36320 +0.7 2.6 type IV secretion system family protein compare
BPHYT_RS21725 +0.7 0.9 taurine ABC transporter substrate-binding protein compare
BPHYT_RS10590 +0.7 1.0 hypothetical protein compare
BPHYT_RS16195 +0.7 2.0 carbon monoxide dehydrogenase subunit G compare
BPHYT_RS16335 +0.7 0.8 membrane protein compare
BPHYT_RS10175 +0.7 1.6 membrane protein compare
BPHYT_RS04010 +0.7 0.9 glycosyl transferase compare
BPHYT_RS26970 +0.7 3.3 L-lactate dehydrogenase, LldF subunit (from data) compare
BPHYT_RS36475 +0.7 2.2 hypothetical protein compare
BPHYT_RS34940 +0.7 1.7 3-phenylpropionate dioxygenase compare
BPHYT_RS06090 +0.7 2.3 TetR family transcriptional regulator compare
BPHYT_RS28535 +0.7 0.7 response regulator receiver compare
BPHYT_RS21235 +0.7 2.9 hypothetical protein compare
BPHYT_RS22685 +0.7 3.1 shikimate 5-dehydrogenase compare
BPHYT_RS14005 +0.7 3.1 ABC transporter compare
BPHYT_RS20970 +0.7 1.2 hypothetical protein compare
BPHYT_RS12825 +0.7 1.2 phasin family protein compare
BPHYT_RS36565 +0.7 4.0 hypothetical protein compare
BPHYT_RS11825 +0.7 0.7 cytosine deaminase compare
BPHYT_RS00790 +0.7 1.6 conjugal transfer protein TraF compare
BPHYT_RS03270 +0.7 2.0 acyl-CoA hydrolase compare
BPHYT_RS04500 +0.7 1.4 urease accessory protein UreF compare
BPHYT_RS20895 +0.7 2.3 ABC transporter compare
BPHYT_RS30565 +0.7 1.8 dihydropteridine reductase compare
BPHYT_RS14070 +0.7 1.9 hypothetical protein compare
BPHYT_RS21630 +0.7 1.8 NmrA family transcriptional regulator compare
BPHYT_RS33740 +0.7 1.8 hypothetical protein compare
BPHYT_RS10410 +0.7 2.6 monooxygenase compare
BPHYT_RS20430 +0.7 1.6 3-dehydroquinate dehydratase compare
BPHYT_RS02985 +0.7 1.5 MaoC family dehydratase compare
BPHYT_RS35880 +0.7 2.9 response regulator receiver protein compare
BPHYT_RS30815 +0.7 1.9 2-methylcitrate dehydratase compare
BPHYT_RS08030 +0.7 2.0 transposase compare
BPHYT_RS04670 +0.7 1.7 sulfurtransferase compare
BPHYT_RS29330 +0.7 2.0 acetyltransferase compare
BPHYT_RS10720 +0.6 0.9 hypothetical protein compare
BPHYT_RS25340 +0.6 1.7 sulfatase compare
BPHYT_RS24390 +0.6 2.3 hypothetical protein compare
BPHYT_RS15465 +0.6 2.6 tRNA-Gly compare
BPHYT_RS04710 +0.6 1.0 hypothetical protein compare
BPHYT_RS04115 +0.6 1.8 glycosyhydrolase compare
BPHYT_RS17750 +0.6 5.1 VacJ family lipoprotein compare
BPHYT_RS11040 +0.6 0.8 GntR family transcriptional regulator compare
BPHYT_RS24730 +0.6 1.4 AraC family transcriptional regulator compare
BPHYT_RS15890 +0.6 0.8 3-hydroxy-2-methylbutyryl-CoA dehydrogenase compare
BPHYT_RS28840 +0.6 1.2 oxidoreductase compare
BPHYT_RS15845 +0.6 2.5 hypothetical protein compare
BPHYT_RS29175 +0.6 0.9 ABC transporter ATP-binding protein compare
BPHYT_RS24935 +0.6 2.0 cysteinyl-tRNA synthetase compare
BPHYT_RS33040 +0.6 1.4 hypothetical protein compare
BPHYT_RS21790 +0.6 1.4 hypothetical protein compare
BPHYT_RS01365 +0.6 3.3 cobalamin biosynthesis protein CobW compare
BPHYT_RS30300 +0.6 2.3 FMN reductase compare
BPHYT_RS01170 +0.6 1.3 hypothetical protein compare
BPHYT_RS27520 +0.6 2.5 membrane protein compare
BPHYT_RS03110 +0.6 0.7 MarR family transcriptional regulator compare
BPHYT_RS19260 +0.6 0.7 hypothetical protein compare
BPHYT_RS33610 +0.6 1.2 DNA polymerase I compare
BPHYT_RS27195 +0.6 1.7 LacI family transcriptional regulator compare
BPHYT_RS30395 +0.6 0.8 small mechanosensitive ion channel protein MscS compare
BPHYT_RS09390 +0.6 1.9 ABC transporter permease compare
BPHYT_RS20455 +0.6 2.2 hypothetical protein compare
BPHYT_RS27395 +0.6 1.3 N-acetyltransferase GCN5 compare
BPHYT_RS28740 +0.6 1.5 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase compare
BPHYT_RS32540 +0.6 1.5 hypothetical protein compare
BPHYT_RS16570 +0.6 1.9 glutathione S-transferase compare
BPHYT_RS07425 +0.6 1.3 hypothetical protein compare
BPHYT_RS07330 +0.6 2.2 5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase compare
BPHYT_RS35590 +0.6 2.3 tryptophanyl-tRNA synthetase compare
BPHYT_RS26870 +0.6 1.3 cytochrome C551 compare
BPHYT_RS31635 +0.6 1.1 choline dehydrogenase compare
BPHYT_RS35180 +0.6 1.6 high potential iron-sulfur protein compare
BPHYT_RS07040 +0.6 1.3 asparaginase compare
BPHYT_RS11855 +0.6 1.6 flagellar motor protein MotB compare
BPHYT_RS34280 +0.6 1.1 hypothetical protein compare
BPHYT_RS17695 +0.6 3.7 membrane protein compare
BPHYT_RS23065 +0.6 2.1 MFS transporter compare
BPHYT_RS04745 +0.6 2.0 sulfate adenylyltransferase compare
BPHYT_RS20780 +0.6 2.7 acyl-CoA dehydrogenase compare
BPHYT_RS10715 +0.6 2.0 acyl-CoA dehydrogenase compare
BPHYT_RS33340 +0.6 2.4 hypothetical protein compare
BPHYT_RS28380 +0.6 1.8 lon protease compare
BPHYT_RS10415 +0.6 1.9 taurine dioxygenase compare
BPHYT_RS09725 +0.6 1.0 exopolysaccharide biosynthesis protein compare
BPHYT_RS10120 +0.6 1.3 membrane protein compare
BPHYT_RS02970 +0.6 4.6 excinuclease ABC subunit A compare
BPHYT_RS23510 +0.6 2.4 AMP-dependent synthetase compare
BPHYT_RS04905 +0.6 2.0 quinol oxidase compare
BPHYT_RS19660 +0.6 0.9 hypothetical protein compare
BPHYT_RS18465 +0.6 3.6 membrane protein compare
BPHYT_RS06840 +0.6 2.5 hypothetical protein compare
BPHYT_RS34205 +0.6 1.3 pyridoxal-dependent decarboxylase compare
BPHYT_RS03155 +0.6 1.4 histidine triad (HIT) protein compare
BPHYT_RS33525 +0.6 2.2 hypothetical protein compare
BPHYT_RS03620 +0.6 3.6 poly(A) polymerase compare
BPHYT_RS09245 +0.6 1.1 ABC transporter ATP-binding protein compare
BPHYT_RS31465 +0.6 1.5 D-isomer specific 2-hydroxyacid dehydrogenase compare


Specific Phenotypes

For 5 genes in this experiment

For motility Agar in Burkholderia phytofirmans PsJN

For motility Agar across organisms