Culturing: rhodanobacter_10B01_ML12, 96 deep-well microplate; 0.8 mL volume, Aerobic, at 30 (C), shaken=700 rpm
| Pathway | #Steps | #Present | #Specific |
|---|
| L-aspartate degradation I | 1 | 1 | 1 |
| 3-(4-hydroxyphenyl)pyruvate biosynthesis | 1 | 1 | 1 |
| L-aspartate biosynthesis | 1 | 1 | 1 |
| malate/L-aspartate shuttle pathway | 2 | 2 | 1 |
| L-tryptophan degradation IV (via indole-3-lactate) | 2 | 1 | 1 |
| atromentin biosynthesis | 2 | 1 | 1 |
| L-glutamate degradation II | 2 | 1 | 1 |
| L-tyrosine degradation II | 2 | 1 | 1 |
| lipoate salvage I | 2 | 1 | 1 |
| L-tyrosine biosynthesis I | 3 | 3 | 1 |
| L-phenylalanine biosynthesis I | 3 | 3 | 1 |
| L-asparagine degradation III (mammalian) | 3 | 3 | 1 |
| TCA cycle VIII (Chlamydia) | 6 | 5 | 2 |
| methylglyoxal degradation I | 3 | 2 | 1 |
| methylglyoxal degradation VIII | 3 | 2 | 1 |
| (R)-cysteate degradation | 3 | 1 | 1 |
| indole-3-acetate biosynthesis VI (bacteria) | 3 | 1 | 1 |
| sulfolactate degradation III | 3 | 1 | 1 |
| L-phenylalanine degradation II (anaerobic) | 3 | 1 | 1 |
| L-tyrosine degradation IV (to 4-methylphenol) | 3 | 1 | 1 |
| superpathway of L-aspartate and L-asparagine biosynthesis | 4 | 3 | 1 |
| L-phenylalanine degradation III | 4 | 2 | 1 |
| L-tyrosine degradation III | 4 | 2 | 1 |
| lipoate salvage II | 4 | 1 | 1 |
| L-tryptophan degradation VIII (to tryptophol) | 4 | 1 | 1 |
| L-tyrosine degradation I | 5 | 4 | 1 |
| trans-4-hydroxy-L-proline degradation I | 5 | 3 | 1 |
| superpathway of plastoquinol biosynthesis | 5 | 2 | 1 |
| L-tryptophan degradation XIII (reductive Stickland reaction) | 5 | 1 | 1 |
| L-tyrosine degradation V (reductive Stickland reaction) | 5 | 1 | 1 |
| 4-hydroxybenzoate biosynthesis I (eukaryotes) | 5 | 1 | 1 |
| L-phenylalanine degradation VI (reductive Stickland reaction) | 5 | 1 | 1 |
| C4 photosynthetic carbon assimilation cycle, NAD-ME type | 11 | 7 | 2 |
| superpathway of L-threonine biosynthesis | 6 | 6 | 1 |
| superpathway of sulfolactate degradation | 6 | 2 | 1 |
| coenzyme M biosynthesis II | 6 | 1 | 1 |
| anaerobic energy metabolism (invertebrates, cytosol) | 7 | 7 | 1 |
| C4 photosynthetic carbon assimilation cycle, PEPCK type | 14 | 8 | 2 |
| pyruvate fermentation to propanoate I | 7 | 3 | 1 |
| incomplete reductive TCA cycle | 7 | 3 | 1 |
| partial TCA cycle (obligate autotrophs) | 8 | 7 | 1 |
| superpathway of methylglyoxal degradation | 8 | 4 | 1 |
| superpathway of anaerobic energy metabolism (invertebrates) | 17 | 13 | 2 |
| superpathway of aromatic amino acid biosynthesis | 18 | 18 | 2 |
| TCA cycle V (2-oxoglutarate synthase) | 9 | 8 | 1 |
| TCA cycle II (plants and fungi) | 9 | 8 | 1 |
| TCA cycle IV (2-oxoglutarate decarboxylase) | 9 | 7 | 1 |
| superpathway of L-methionine biosynthesis (transsulfuration) | 9 | 7 | 1 |
| TCA cycle VII (acetate-producers) | 9 | 7 | 1 |
| TCA cycle VI (Helicobacter) | 9 | 6 | 1 |
| L-phenylalanine degradation IV (mammalian, via side chain) | 9 | 2 | 1 |
| superpathway of L-phenylalanine biosynthesis | 10 | 10 | 1 |
| superpathway of L-tyrosine biosynthesis | 10 | 10 | 1 |
| TCA cycle III (animals) | 10 | 9 | 1 |
| TCA cycle I (prokaryotic) | 10 | 8 | 1 |
| anaerobic energy metabolism (invertebrates, mitochondrial) | 10 | 6 | 1 |
| rosmarinic acid biosynthesis I | 10 | 1 | 1 |
| reductive TCA cycle I | 11 | 6 | 1 |
| L-glutamate degradation VIII (to propanoate) | 11 | 3 | 1 |
| (S)-reticuline biosynthesis I | 11 | 1 | 1 |
| superpathway of L-methionine biosynthesis (by sulfhydrylation) | 12 | 11 | 1 |
| superpathway of glyoxylate bypass and TCA | 12 | 10 | 1 |
| reductive TCA cycle II | 12 | 5 | 1 |
| indole-3-acetate biosynthesis II | 12 | 3 | 1 |
| superpathway of L-isoleucine biosynthesis I | 13 | 13 | 1 |
| (S)-lactate fermentation to propanoate, acetate and hydrogen | 13 | 5 | 1 |
| superpathway of glyoxylate cycle and fatty acid degradation | 14 | 11 | 1 |
| superpathway of rosmarinic acid biosynthesis | 14 | 1 | 1 |
| mixed acid fermentation | 16 | 12 | 1 |
| superpathway of L-lysine, L-threonine and L-methionine biosynthesis I | 18 | 16 | 1 |
| methylaspartate cycle | 19 | 11 | 1 |
| superpathway of cytosolic glycolysis (plants), pyruvate dehydrogenase and TCA cycle | 22 | 19 | 1 |
| aspartate superpathway | 25 | 23 | 1 |
| superpathway of glycolysis, pyruvate dehydrogenase, TCA, and glyoxylate bypass | 26 | 23 | 1 |
| anaerobic aromatic compound degradation (Thauera aromatica) | 27 | 1 | 1 |
| Methanobacterium thermoautotrophicum biosynthetic metabolism | 56 | 25 | 2 |
| superpathway of chorismate metabolism | 59 | 40 | 2 |