Experiment set2IT086 for Pseudomonas fluorescens FW300-N2C3

Compare to:

L-Malic acid disodium salt monohydrate carbon source

200 most important genes:

  gene name fitness t score description  
AO356_21405 -6.3 -4.3 3-isopropylmalate dehydratase compare
AO356_21440 -5.8 -6.9 N-(5'-phosphoribosyl)anthranilate isomerase compare
AO356_14435 -5.7 -3.9 anthranilate phosphoribosyltransferase compare
AO356_13405 -5.7 -8.7 methionine biosynthesis protein MetW compare
AO356_08635 -5.6 -7.6 ATP phosphoribosyltransferase regulatory subunit compare
AO356_14440 -5.1 -5.0 indole-3-glycerol-phosphate synthase compare
AO356_09815 -4.9 -6.7 imidazoleglycerol-phosphate dehydratase compare
AO356_13410 -4.9 -10.5 homoserine O-acetyltransferase compare
AO356_19090 -4.9 -3.3 phosphoribosylaminoimidazole synthetase compare
AO356_13250 -4.8 -8.7 dihydroxy-acid dehydratase compare
AO356_06960 -4.8 -7.3 histidinol-phosphate aminotransferase compare
AO356_10915 -4.8 -10.6 tryptophan synthase subunit beta compare
AO356_12525 -4.7 -9.6 acetylglutamate kinase compare
AO356_06965 -4.7 -8.4 histidinol dehydrogenase compare
AO356_13085 -4.7 -10.0 N-acetylglutamate synthase compare
AO356_18275 -4.6 -13.0 ornithine carbamoyltransferase compare
AO356_08735 -4.6 -14.1 phosphoserine phosphatase compare
AO356_14420 -4.5 -14.6 anthranilate synthase compare
AO356_09525 -4.5 -6.1 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
AO356_09375 -4.4 -22.0 glutamate synthase compare
AO356_21415 -4.4 -10.6 3-isopropylmalate dehydrogenase compare
AO356_13605 -4.4 -6.0 5,10-methylenetetrahydrofolate reductase compare
AO356_21465 -4.4 -4.3 amidophosphoribosyltransferase compare
AO356_09370 -4.3 -13.4 glutamate synthase compare
AO356_09810 -4.3 -5.9 imidazole glycerol phosphate synthase subunit HisH compare
AO356_16170 -4.3 -9.6 acetolactate synthase 3 catalytic subunit compare
AO356_10910 -4.3 -9.5 tryptophan synthase subunit alpha compare
AO356_18325 -4.3 -13.9 argininosuccinate synthase compare
AO356_21400 -4.2 -5.6 isopropylmalate isomerase compare
AO356_10300 -4.2 -5.8 3-phosphoglycerate dehydrogenase compare
AO356_00555 -4.2 -10.7 sulfite reductase compare
AO356_21470 -4.2 -7.5 O-succinylhomoserine sulfhydrylase compare
AO356_16175 -4.2 -8.5 acetolactate synthase 3 regulatory subunit compare
AO356_14295 -4.2 -2.9 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase compare
AO356_22200 -4.1 -9.2 sirohydrochlorin ferrochelatase compare
AO356_00560 -4.1 -2.8 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
AO356_16180 -4.1 -14.7 ketol-acid reductoisomerase compare
AO356_12780 -4.0 -8.1 argininosuccinate lyase compare
AO356_09520 -4.0 -6.1 phosphoribosyl-AMP cyclohydrolase compare
AO356_02265 -4.0 -5.4 glyceraldehyde-3-phosphate dehydrogenase compare
AO356_10340 -4.0 -14.6 phosphoserine phosphatase compare
AO356_14430 -3.9 -5.9 anthranilate synthase compare
AO356_06550 -3.9 -10.9 2-isopropylmalate synthase compare
AO356_06970 -3.9 -6.9 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
AO356_19795 -3.9 -2.7 glycerol-3-phosphate dehydrogenase compare
AO356_09800 -3.8 -6.4 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
AO356_19050 -3.7 -3.6 cysteine synthase compare
AO356_12520 -3.5 -3.4 orotate phosphoribosyltransferase compare
AO356_09795 -3.4 -2.3 imidazole glycerol phosphate synthase subunit HisF compare
AO356_20830 -3.4 -4.5 phosphoadenosine phosphosulfate reductase compare
AO356_17520 -3.2 -2.2 phosphoribosylformylglycinamidine synthase compare
AO356_11450 -3.0 -2.9 cytochrome C compare
AO356_21330 -2.9 -10.7 aromatic amino acid aminotransferase compare
AO356_16600 -2.9 -3.3 malate:quinone oxidoreductase compare
AO356_11315 -2.8 -1.9 shikimate dehydrogenase compare
AO356_27180 -2.7 -5.2 hypothetical protein compare
AO356_18980 -2.6 -11.3 sodium:C4-dicarboxylate symporter (dctA) (from data) conserved
AO356_13685 -2.6 -4.6 glyceraldehyde-3-phosphate dehydrogenase compare
AO356_10445 -2.6 -3.0 serine protease compare
AO356_19085 -2.6 -8.2 phosphoribosylglycinamide formyltransferase compare
AO356_09425 -2.6 -9.0 malate dehydrogenase compare
AO356_08895 -2.5 -2.9 GlcNAc-PI de-N-acetylase compare
AO356_22795 -2.5 -4.6 UTP--glucose-1-phosphate uridylyltransferase compare
AO356_07480 -2.5 -2.9 carbamoyl phosphate synthase large subunit compare
AO356_10065 -2.5 -8.7 Fis family transcriptional regulator conserved
AO356_27210 -2.4 -9.1 hypothetical protein compare
AO356_18730 -2.4 -8.5 arginine N-succinyltransferase compare
AO356_20155 -2.3 -7.1 phosphate acyltransferase compare
AO356_01750 -2.2 -4.4 ATP-dependent Clp protease proteolytic subunit compare
AO356_16665 -2.2 -10.2 sulfate adenylyltransferase compare
AO356_20175 -2.2 -2.6 3-oxoacyl-ACP synthase compare
AO356_16075 -2.2 -4.8 Fis family transcriptional regulator compare
AO356_18735 -2.2 -3.9 arginine N-succinyltransferase compare
AO356_17075 -2.1 -3.2 cytochrome C compare
AO356_19170 -2.1 -5.1 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
AO356_02315 -2.1 -4.8 DNA topoisomerase I compare
AO356_15815 -2.1 -2.4 gamma-glutamyl kinase compare
AO356_03180 -2.1 -4.6 CysB family transcriptional regulator compare
AO356_07005 -2.0 -2.5 ABC transporter ATP-binding protein compare
AO356_10140 -2.0 -7.4 phosphoenolpyruvate carboxykinase [ATP] compare
AO356_01745 -2.0 -5.2 ATP-dependent Clp protease ATP-binding subunit ClpX compare
AO356_12380 -1.9 -7.5 ATP-dependent DNA helicase RecG compare
AO356_06690 -1.9 -3.6 queuine tRNA-ribosyltransferase compare
AO356_02310 -1.9 -3.1 PasA protein compare
AO356_21410 -1.9 -3.9 SAM-dependent methyltransferase compare
AO356_15165 -1.9 -2.8 protein cII compare
AO356_19045 -1.8 -8.1 chemotaxis protein CheY compare
AO356_17070 -1.8 -2.7 cytochrome B compare
AO356_00355 -1.8 -6.7 chemotaxis protein CheY compare
AO356_27215 -1.8 -3.8 hypothetical protein compare
AO356_08465 -1.8 -2.9 protein hupE compare
AO356_18025 -1.8 -3.4 ATP-dependent DNA helicase RuvB compare
AO356_02465 -1.7 -2.4 carbonate dehydratase compare
AO356_09730 -1.7 -5.2 nitrogen regulation protein NR(I) compare
AO356_01740 -1.7 -3.3 DNA-binding protein compare
AO356_16670 -1.6 -9.8 adenylylsulfate kinase compare
AO356_17890 -1.6 -2.0 H-NS histone compare
AO356_14505 -1.6 -2.3 peptidase M23 compare
AO356_27205 -1.5 -6.8 hypothetical protein compare
AO356_10330 -1.5 -10.7 threonine dehydratase compare
AO356_08235 -1.5 -6.4 histidine kinase compare
AO356_19730 -1.5 -2.0 hypothetical protein compare
AO356_07915 -1.5 -3.2 exodeoxyribonuclease V subunit beta compare
AO356_17950 -1.5 -7.3 histidine kinase compare
AO356_17035 -1.5 -5.1 ATPase compare
AO356_11025 -1.4 -4.3 transcriptional regulator PhoU compare
AO356_17985 -1.4 -5.2 cold-shock protein compare
AO356_04560 -1.4 -2.4 serine peptidase compare
AO356_12900 -1.4 -3.4 exopolyphosphatase compare
AO356_29730 -1.4 -2.5 MarR family transcriptional regulator compare
AO356_14135 -1.3 -8.2 biotin synthase compare
AO356_30035 -1.3 -3.3 aminomethyltransferase compare
AO356_19175 -1.3 -2.8 alpha-ribazole phosphatase compare
AO356_10185 -1.3 -6.3 glutamate--cysteine ligase compare
AO356_18020 -1.3 -2.9 ATP-dependent DNA helicase RuvA compare
AO356_12735 -1.3 -1.6 diaminopimelate epimerase compare
AO356_13425 -1.2 -1.9 hypothetical protein compare
AO356_00530 -1.2 -3.6 precorrin-4 C11-methyltransferase compare
AO356_06385 -1.2 -3.2 recombinase XerD compare
AO356_08875 -1.2 -2.2 toluene tolerance protein compare
AO356_21765 -1.2 -2.2 GntR family transcriptional regulator compare
AO356_10060 -1.2 -5.9 ATPase conserved
AO356_19160 -1.2 -5.3 cobyric acid synthase compare
AO356_18775 -1.2 -2.8 aspartate kinase compare
AO356_03620 -1.2 -2.6 cytochrome C compare
AO356_27245 -1.2 -1.3 hypothetical protein compare
AO356_21125 -1.1 -3.7 cyclic peptide transporter compare
AO356_09725 -1.1 -3.4 histidine kinase compare
AO356_27230 -1.1 -3.5 hypothetical protein compare
AO356_16060 -1.1 -2.8 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
AO356_19180 -1.1 -2.6 cobalamin synthase compare
AO356_19835 -1.1 -1.3 histidine kinase compare
AO356_08270 -1.1 -5.6 precorrin-2 C20-methyltransferase compare
AO356_00525 -1.1 -1.7 cobalamin biosynthesis protein CobE compare
AO356_16050 -1.1 -2.5 glucose-6-phosphate isomerase compare
AO356_08905 -1.1 -2.5 glycosyl transferase compare
AO356_11340 -1.1 -1.4 NADH-flavin reductase compare
AO356_07910 -1.1 -1.5 exodeoxyribonuclease V subunit alpha compare
AO356_08585 -1.0 -2.5 50S ribosomal protein L9 compare
AO356_03800 -1.0 -2.0 histidine kinase compare
AO356_16070 -1.0 -4.3 poly(A) polymerase compare
AO356_18715 -1.0 -2.4 L-Arginine ABC transporter, ATPase component (from data) compare
AO356_03070 -1.0 -5.9 histidine kinase compare
AO356_10000 -1.0 -3.6 hypothetical protein compare
AO356_02460 -1.0 -1.5 hypothetical protein compare
AO356_00545 -1.0 -5.8 methionine synthase compare
AO356_19155 -1.0 -5.3 threonine-phosphate decarboxylase compare
AO356_12990 -1.0 -4.6 5-formyltetrahydrofolate cyclo-ligase compare
AO356_05630 -1.0 -2.3 LysR family transcriptional regulator compare
AO356_21260 -1.0 -1.6 6-carboxy-5,6,7,8-tetrahydropterin synthase compare
AO356_08280 -1.0 -3.0 oxidoreductase compare
AO356_19135 -0.9 -3.0 cob(I)yrinic acid a,c-diamide adenosyltransferase compare
AO356_16450 -0.9 -2.4 GTP-binding protein compare
AO356_20785 -0.9 -1.5 hypothetical protein compare
AO356_21460 -0.9 -1.6 colicin V production CvpA compare
AO356_12725 -0.9 -3.1 recombinase XerC compare
AO356_19140 -0.9 -6.4 cobyrinic acid a,c-diamide synthase compare
AO356_27250 -0.9 -2.6 hypothetical protein compare
AO356_19150 -0.9 -4.0 cobalamin biosynthesis protein CobD compare
AO356_08385 -0.9 -1.8 urease subunit beta compare
AO356_05615 -0.9 -2.6 hypothetical protein compare
AO356_06695 -0.9 -4.4 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
AO356_00505 -0.9 -5.5 cobalamin biosynthesis protein CobN compare
AO356_03405 -0.9 -2.7 serine acetyltransferase compare
AO356_22675 -0.9 -1.4 sulfate transporter compare
AO356_02800 -0.9 -2.3 transporter compare
AO356_08640 -0.9 -2.9 membrane protease HflC compare
AO356_10920 -0.9 -4.6 LysR family transcriptional regulator compare
AO356_05670 -0.9 -1.9 recombinase RecA compare
AO356_10005 -0.9 -4.9 branched-chain amino acid permease (azaleucine resistance) compare
AO356_17485 -0.9 -3.1 elongation factor 4 compare
AO356_23645 -0.9 -1.2 hypothetical protein compare
AO356_18000 -0.9 -1.1 FmdB family transcriptional regulator compare
AO356_28160 -0.8 -1.7 hypothetical protein compare
AO356_07195 -0.8 -3.9 GntR family transcriptional regulator compare
AO356_17555 -0.8 -1.3 GntR family transcriptional regulator compare
AO356_08275 -0.8 -2.2 precorrin isomerase compare
AO356_08265 -0.8 -2.9 precorrin-3B C17-methyltransferase compare
AO356_02105 -0.8 -1.1 hypothetical protein compare
AO356_15750 -0.8 -1.8 hypothetical protein compare
AO356_01605 -0.8 -2.3 hypothetical protein compare
AO356_01940 -0.8 -1.0 hypothetical protein compare
AO356_15460 -0.8 -1.6 hypothetical protein compare
AO356_28645 -0.8 -1.9 AraC family transcriptional regulator compare
AO356_09300 -0.8 -1.0 type II secretory protein PulM compare
AO356_13475 -0.8 -3.3 glutathione synthetase compare
AO356_04525 -0.8 -3.4 hypothetical protein compare
AO356_12475 -0.8 -4.3 reactive intermediate/imine deaminase compare
AO356_28610 -0.8 -1.3 AraC family transcriptional regulator compare
AO356_08610 -0.8 -3.7 exoribonuclease R compare
AO356_16870 -0.8 -4.9 benzoate transporter compare
AO356_00605 -0.8 -2.6 TetR family transcriptional regulator compare
AO356_02290 -0.8 -2.1 TetR family transcriptional regulator compare
AO356_04815 -0.8 -1.8 hypothetical protein compare
AO356_06995 -0.8 -3.2 outer membrane lipid asymmetry maintenance protein MlaD compare
AO356_07370 -0.8 -2.9 nicotinate-nucleotide pyrophosphorylase compare
AO356_15325 -0.8 -1.8 hypothetical protein compare
AO356_11610 -0.8 -1.3 glycerol acyltransferase compare
AO356_12375 -0.7 -5.0 histidine kinase compare
AO356_03500 -0.7 -2.2 3-oxoacyl-ACP reductase compare


Specific Phenotypes

For 3 genes in this experiment

For carbon source L-Malic acid disodium salt monohydrate in Pseudomonas fluorescens FW300-N2C3

For carbon source L-Malic acid disodium salt monohydrate across organisms