Experiment set2IT086 for Rahnella sp. WP5

Compare to:

D-Glucose carbon source

200 most important genes:

  gene name fitness t score description  
EX31_RS13275 -5.2 -10.6 diaminopimelate decarboxylase compare
EX31_RS16855 -4.5 -15.3 phosphoribosylamine--glycine ligase compare
EX31_RS12515 -4.5 -26.9 glutamate synthase large subunit compare
EX31_RS18530 -4.5 -13.4 leucine-responsive transcriptional regulator Lrp compare
EX31_RS09855 -4.4 -4.3 orotidine-5'-phosphate decarboxylase compare
EX31_RS03935 -4.4 -13.8 threonine synthase compare
EX31_RS22695 -4.4 -9.3 phosphoribosylformylglycinamidine cyclo-ligase compare
EX31_RS11465 -4.4 -7.3 imidazole glycerol phosphate synthase subunit HisF compare
EX31_RS14215 -4.4 -21.1 cystathionine gamma-synthase compare
EX31_RS16860 -4.4 -20.7 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
EX31_RS14200 -4.4 -17.7 phosphoenolpyruvate carboxylase compare
EX31_RS12400 -4.3 -3.0 RNA polymerase factor sigma-54 compare
EX31_RS21895 -4.2 -18.4 phosphoribosylformylglycinamidine synthase compare
EX31_RS11735 -4.1 -8.4 homoserine O-succinyltransferase compare
EX31_RS03945 -4.1 -23.9 bifunctional aspartate kinase/homoserine dehydrogenase I compare
EX31_RS15020 -4.1 -19.7 ketol-acid reductoisomerase compare
EX31_RS15005 -4.0 -18.6 dihydroxy-acid dehydratase compare
EX31_RS23415 -4.0 -8.9 citrate synthase compare
EX31_RS03835 -4.0 -9.7 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit compare
EX31_RS12510 -4.0 -17.7 FAD-dependent oxidoreductase compare
EX31_RS15875 -4.0 -15.3 nitrogen regulation protein NR(II) compare
EX31_RS20975 -4.0 -8.8 glutamate-5-semialdehyde dehydrogenase compare
EX31_RS09980 -4.0 -5.4 tryptophan synthase subunit alpha compare
EX31_RS11470 -4.0 -3.8 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
EX31_RS15880 -4.0 -10.2 nitrogen regulation protein NR(I) compare
EX31_RS18095 -3.9 -5.9 quinone-dependent dihydroorotate dehydrogenase compare
EX31_RS09965 -3.9 -6.9 anthranilate phosphoribosyltransferase compare
EX31_RS11440 -3.9 -7.8 histidinol dehydrogenase compare
EX31_RS14185 -3.9 -10.2 acetylglutamate kinase compare
EX31_RS09975 -3.9 -7.7 tryptophan synthase subunit beta compare
EX31_RS12825 -3.9 -9.5 ornithine carbamoyltransferase compare
EX31_RS22620 -3.9 -7.3 5-(carboxyamino)imidazole ribonucleotide synthase compare
EX31_RS13445 -3.8 -17.7 argininosuccinate synthase compare
EX31_RS14180 -3.8 -18.4 argininosuccinate lyase compare
EX31_RS02690 -3.8 -7.2 pyrroline-5-carboxylate reductase compare
EX31_RS21850 -3.8 -2.6 pyridoxine 5'-phosphate synthase compare
EX31_RS03830 -3.8 -20.2 carbamoyl-phosphate synthase large subunit compare
EX31_RS23245 -3.7 -20.3 asparagine synthase B compare
EX31_RS13160 -3.7 -14.0 amino-acid N-acetyltransferase compare
EX31_RS02520 -3.7 -4.3 sigma-54-dependent Fis family transcriptional regulator compare
EX31_RS07585 -3.7 -9.4 bifunctional chorismate mutase/prephenate dehydratase compare
EX31_RS03690 -3.7 -14.2 3-isopropylmalate dehydratase large subunit compare
EX31_RS20980 -3.6 -8.9 glutamate 5-kinase compare
EX31_RS22750 -3.6 -4.9 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
EX31_RS21470 -3.6 -11.8 phosphoglycerate dehydrogenase compare
EX31_RS19570 -3.6 -14.1 amidophosphoribosyltransferase compare
EX31_RS04035 -3.6 -16.2 phosphoserine phosphatase compare
EX31_RS14190 -3.5 -14.5 N-acetyl-gamma-glutamyl-phosphate reductase compare
EX31_RS20670 -3.5 -1.7 RNA chaperone/antiterminator CspA compare
EX31_RS03940 -3.5 -12.5 homoserine kinase compare
EX31_RS09970 -3.5 -8.8 bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF compare
EX31_RS09960 -3.4 -7.2 glutamine amidotransferase compare
EX31_RS02530 -3.4 -4.6 ABC transporter ATP-binding protein compare
EX31_RS05785 -3.4 -4.6 superoxide dismutase [Mn] compare
EX31_RS09955 -3.4 -8.3 anthranilate synthase component 1 compare
EX31_RS11460 -3.4 -3.9 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
EX31_RS03685 -3.4 -16.2 3-isopropylmalate dehydrogenase compare
EX31_RS07870 -3.3 -10.1 adenylyl-sulfate kinase compare
EX31_RS03680 -3.3 -14.2 2-isopropylmalate synthase compare
EX31_RS14310 -3.3 -5.8 6-phosphofructokinase compare
EX31_RS03695 -3.3 -6.4 3-isopropylmalate dehydratase small subunit compare
EX31_RS09890 -3.3 -12.4 HTH-type transcriptional regulator CysB compare
EX31_RS18255 -3.3 -3.1 3-phosphoserine/phosphohydroxythreonine transaminase compare
EX31_RS11445 -3.3 -10.1 histidinol-phosphate transaminase compare
EX31_RS20495 -3.3 -10.4 outer membrane protein assembly factor BamB compare
EX31_RS02515 -3.3 -4.9 PAS domain-containing protein compare
EX31_RS07905 -3.2 -19.0 NADPH-dependent assimilatory sulfite reductase flavoprotein subunit compare
EX31_RS22625 -3.2 -3.7 5-(carboxyamino)imidazole ribonucleotide mutase compare
EX31_RS07900 -3.2 -17.5 assimilatory sulfite reductase (NADPH) hemoprotein subunit compare
EX31_RS20175 -3.1 -10.1 cysteine synthase A compare
EX31_RS07590 -3.1 -2.1 bifunctional chorismate mutase/prephenate dehydrogenase compare
EX31_RS07895 -3.1 -11.2 phosphoadenylyl-sulfate reductase compare
EX31_RS15010 -3.1 -12.2 threonine ammonia-lyase, biosynthetic compare
EX31_RS14340 -3.0 -2.0 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
EX31_RS03030 -2.8 -12.3 helix-turn-helix transcriptional regulator compare
EX31_RS22245 -2.8 -4.2 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
EX31_RS11450 -2.8 -8.3 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
EX31_RS03775 -2.8 -4.6 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
EX31_RS14335 -2.8 -1.9 serine O-acetyltransferase compare
EX31_RS20450 -2.8 -6.9 IMP dehydrogenase compare
EX31_RS08720 -2.7 -14.4 3'(2'),5'-bisphosphate nucleotidase CysQ compare
EX31_RS24385 -2.7 -5.3 dihydroorotase compare
EX31_RS11455 -2.7 -4.6 imidazole glycerol phosphate synthase subunit HisH compare
EX31_RS14205 -2.6 -12.4 methylenetetrahydrofolate reductase compare
EX31_RS18540 -2.6 -1.8 cysteine/glutathione ABC transporter permease/ATP-binding protein CydD compare
EX31_RS08745 -2.6 -2.4 50S ribosomal protein L9 compare
EX31_RS09580 -2.6 -2.3 flagellar motor switch protein FliN compare
EX31_RS15870 -2.6 -3.5 glutamate--ammonia ligase compare
EX31_RS14500 -2.5 -9.4 orotate phosphoribosyltransferase compare
EX31_RS12785 -2.4 -10.4 aspartate carbamoyltransferase compare
EX31_RS03480 -2.4 -2.3 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
EX31_RS04630 -2.3 -14.2 aspartate aminotransferase family protein compare
EX31_RS07875 -2.3 -14.8 sulfate adenylyltransferase subunit CysN compare
EX31_RS07880 -2.3 -15.0 sulfate adenylyltransferase subunit CysD compare
EX31_RS04925 -2.2 -4.3 Fe-S biogenesis protein NfuA compare
EX31_RS22810 -2.2 -3.2 helix-turn-helix domain-containing protein compare
EX31_RS15155 -2.2 -2.5 diaminopimelate epimerase compare
EX31_RS19610 -2.1 -7.6 4-phosphoerythronate dehydrogenase PdxB compare
EX31_RS03035 -2.1 -9.4 LysE family transporter compare
EX31_RS07955 -2.1 -14.9 GTP diphosphokinase compare
EX31_RS12875 -2.1 -2.7 D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase compare
EX31_RS21400 -2.1 -5.8 transketolase compare
EX31_RS23440 -2.1 -2.4 2-oxoglutarate dehydrogenase E1 component compare
EX31_RS06055 -2.1 -4.0 phosphate ABC transporter ATP-binding protein PstB compare
EX31_RS22250 -2.0 -4.8 ATP-dependent protease ATP-binding subunit ClpX compare
EX31_RS03250 -2.0 -8.6 RNA polymerase-binding protein DksA compare
EX31_RS22430 -2.0 -2.2 hemolysin expression modulator Hha compare
EX31_RS04390 -2.0 -3.8 DNA polymerase III subunit chi compare
EX31_RS03040 -2.0 -8.2 hypothetical protein compare
EX31_RS07595 -1.9 -7.5 3-deoxy-7-phosphoheptulonate synthase compare
EX31_RS06060 -1.9 -4.8 phosphate ABC transporter permease PstA compare
EX31_RS20190 -1.8 -2.0 PTS glucose transporter subunit IIA compare
EX31_RS25340 -1.8 -5.0 hypothetical protein compare
EX31_RS06070 -1.8 -8.2 phosphate ABC transporter substrate-binding protein PstS compare
EX31_RS03400 -1.8 -5.3 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase compare
EX31_RS02145 -1.8 -2.8 methionine synthase compare
EX31_RS25690 -1.7 -2.3 tyrosine-type recombinase/integrase compare
EX31_RS14320 -1.7 -2.2 envelope stress response regulator transcription factor CpxR compare
EX31_RS09470 -1.7 -4.3 flagella biosynthesis regulatory protein FliT compare
EX31_RS14620 -1.7 -2.2 SCP2 domain-containing protein compare
EX31_RS11815 -1.6 -8.7 glucose-6-phosphate isomerase compare
EX31_RS19600 -1.6 -6.6 tRNA pseudouridine(38-40) synthase TruA compare
EX31_RS10115 -1.5 -8.0 formyltetrahydrofolate deformylase compare
EX31_RS02740 -1.5 -2.0 oxidative damage protection protein compare
EX31_RS11435 -1.4 -3.7 ATP phosphoribosyltransferase compare
EX31_RS18045 -1.4 -2.4 macrodomain Ter protein MatP compare
EX31_RS25105 -1.4 -1.7 DUF2474 domain-containing protein compare
EX31_RS08150 -1.4 -9.5 inorganic triphosphatase compare
EX31_RS04105 -1.4 -2.5 helix-turn-helix domain-containing protein compare
EX31_RS26075 -1.3 -1.6 hypothetical protein compare
EX31_RS23485 -1.3 -2.1 colicin uptake protein TolR compare
EX31_RS13045 -1.3 -9.2 bifunctional uridylyltransferase/uridylyl-removing protein GlnD compare
EX31_RS06065 -1.3 -5.6 phosphate ABC transporter permease PstC compare
EX31_RS08515 -1.3 -10.3 lipoprotein NlpI compare
EX31_RS11690 -1.3 -2.9 dihydroneopterin triphosphate diphosphatase compare
EX31_RS25945 -1.3 -2.4 hypothetical protein compare
EX31_RS20735 -1.3 -3.5 exodeoxyribonuclease V subunit beta compare
EX31_RS03920 -1.2 -5.4 transaldolase compare
EX31_RS08130 -1.2 -1.4 accessory factor UbiK family protein compare
EX31_RS25985 -1.2 -2.2 protein YrbN compare
EX31_RS09425 -1.2 -1.2 L-cystine ABC transporter ATP-binding protein YecC compare
EX31_RS24480 -1.2 -2.7 purine nucleoside phosphoramidase compare
EX31_RS08535 -1.2 -2.4 30S ribosome-binding factor RbfA compare
EX31_RS20180 -1.2 -2.5 phosphocarrier protein Hpr compare
EX31_RS25370 -1.2 -7.2 HTH-type transcriptional regulator MetR compare
EX31_RS21190 -1.1 -3.0 ribonuclease HI compare
EX31_RS05060 -1.1 -5.8 gluconate operon transcriptional repressor GntR compare
EX31_RS06140 -1.1 -7.5 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
EX31_RS07750 -1.1 -7.8 glutamate--cysteine ligase compare
EX31_RS22740 -1.1 -6.5 4-hydroxy-tetrahydrodipicolinate synthase compare
EX31_RS03790 -1.1 -2.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) compare
EX31_RS13430 -1.1 -3.3 hypothetical protein compare
EX31_RS25365 -1.1 -1.2 50S ribosomal protein L31 compare
EX31_RS03900 -1.1 -4.3 molecular chaperone DnaK compare
EX31_RS07130 -1.1 -2.5 ABC transporter substrate-binding protein compare
EX31_RS07440 -1.0 -1.7 urea carboxylase-associated family protein compare
EX31_RS15000 -1.0 -6.5 branched-chain amino acid transaminase compare
EX31_RS26065 -1.0 -2.1 IS630 family transposase compare
EX31_RS20530 -1.0 -4.5 nucleoside-diphosphate kinase compare
EX31_RS11845 -1.0 -0.8 repressor LexA compare
EX31_RS20185 -1.0 -4.5 phosphoenolpyruvate-protein phosphotransferase PtsI compare
EX31_RS20890 -1.0 -2.0 hypothetical protein compare
EX31_RS09190 -1.0 -2.6 ABC transporter permease compare
EX31_RS06000 -1.0 -2.9 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
EX31_RS05825 -1.0 -1.8 mannitol-1-phosphate 5-dehydrogenase compare
EX31_RS16720 -1.0 -3.6 helix-turn-helix domain-containing protein compare
EX31_RS25450 -1.0 -2.8 helix-turn-helix domain-containing protein compare
EX31_RS09790 -1.0 -2.6 autoinducer 2 ABC transporter permease LsrD compare
EX31_RS13740 -1.0 -1.6 glutathione transferase GstA compare
EX31_RS23315 -0.9 -3.8 replication initiation negative regulator SeqA compare
EX31_RS01615 -0.9 -2.1 DNA breaking-rejoining protein compare
EX31_RS19780 -0.9 -4.5 tRNA-Arg compare
EX31_RS14220 -0.9 -2.9 met regulon transcriptional regulator MetJ compare
EX31_RS14160 -0.9 -3.5 HTH-type transcriptional repressor FabR compare
EX31_RS03665 -0.9 -7.9 acetolactate synthase 3 large subunit compare
EX31_RS23500 -0.9 -2.8 peptidoglycan-associated lipoprotein Pal compare
EX31_RS07885 -0.9 -6.0 uroporphyrinogen-III C-methyltransferase compare
EX31_RS16000 -0.9 -2.3 alternative ribosome-rescue factor A compare
EX31_RS02525 -0.9 -4.1 ABC transporter permease compare
EX31_RS24255 -0.9 -7.1 glucans biosynthesis glucosyltransferase MdoH compare
EX31_RS23495 -0.9 -3.9 Tol-Pal system protein TolB compare
EX31_RS15015 -0.9 -2.7 HTH-type transcriptional activator IlvY compare
EX31_RS19400 -0.9 -2.0 NADH-quinone oxidoreductase subunit NuoI compare
EX31_RS06795 -0.8 -2.7 ABC transporter ATP-binding protein compare
EX31_RS05010 -0.8 -6.8 glycogen synthase GlgA compare
EX31_RS07785 -0.8 -1.1 carbon storage regulator CsrA compare
EX31_RS14990 -0.8 -5.8 acetolactate synthase 2 catalytic subunit compare
EX31_RS01610 -0.8 -1.7 phage tail protein compare
EX31_RS03570 -0.8 -1.1 DUF721 domain-containing protein compare
EX31_RS05145 -0.8 -4.2 inorganic phosphate transporter PitA compare
EX31_RS24250 -0.8 -4.6 glucan biosynthesis protein G compare
EX31_RS06485 -0.8 -1.3 YdbL family protein compare
EX31_RS19655 -0.8 -3.0 beta-ketoacyl-ACP synthase I compare
EX31_RS20265 -0.8 -1.4 YaiI/YqxD family protein compare
EX31_RS18525 -0.8 -1.8 DNA translocase FtsK compare
EX31_RS13815 -0.8 -0.9 ribonuclease T compare
EX31_RS15375 -0.8 -1.3 nitrogen fixation protein NifW compare
EX31_RS23940 -0.8 -2.3 ABC transporter permease compare
EX31_RS07545 -0.8 -2.7 SDR family oxidoreductase compare
EX31_RS25410 -0.8 -1.0 transposase compare


Specific Phenotypes

For 2 genes in this experiment

For carbon source D-Glucose in Rahnella sp. WP5

For carbon source D-Glucose across organisms