Experiment set2IT086 for Cupriavidus basilensis FW507-4G11

Compare to:

L-Threonine nitrogen source

200 most important genes:

  gene name fitness t score description  
RR42_RS16265 -8.2 -5.6 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
RR42_RS01385 -7.0 -4.8 5,10-methylenetetrahydrofolate reductase compare
RR42_RS18305 -6.6 -4.5 anthranilate phosphoribosyltransferase compare
RR42_RS14390 -6.3 -4.4 3-isopropylmalate dehydratase compare
RR42_RS30655 -6.3 -4.3 LysR family transcriptional regulator compare
RR42_RS14365 -6.1 -4.1 N-(5'-phosphoribosyl)anthranilate isomerase compare
RR42_RS06485 -6.0 -5.8 chorismate synthase compare
RR42_RS16255 -6.0 -7.1 sulfate adenylyltransferase compare
RR42_RS33255 -5.9 -3.8 protein-tyrosine phosphatase compare
RR42_RS04475 -5.8 -10.2 3-phosphoshikimate 1-carboxyvinyltransferase compare
RR42_RS16250 -5.8 -6.9 sulfate adenylyltransferase compare
RR42_RS19005 -5.6 -5.4 3-dehydroquinate synthase compare
RR42_RS14400 -5.6 -5.4 isopropylmalate isomerase compare
RR42_RS05860 -5.5 -5.3 phospho-2-dehydro-3-deoxyheptonate aldolase compare
RR42_RS13910 -5.3 -8.4 glutamate racemase compare
RR42_RS30660 -5.3 -9.6 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase compare
RR42_RS01160 -5.3 -11.7 homoserine O-acetyltransferase compare
RR42_RS11770 -5.2 -3.6 cyclase compare
RR42_RS14385 -5.1 -6.9 3-isopropylmalate dehydrogenase compare
RR42_RS19010 -4.8 -8.6 shikimate kinase compare
RR42_RS16280 -4.8 -8.0 transcriptional regulator compare
RR42_RS16245 -4.7 -6.4 uroporphyrin-III methyltransferase compare
RR42_RS18295 -4.3 -12.5 anthranilate synthase component I compare
RR42_RS05990 -4.2 -9.3 aromatic amino acid aminotransferase compare
RR42_RS16275 -4.1 -4.0 membrane protein compare
RR42_RS16270 -4.1 -11.0 sulfite reductase compare
RR42_RS18990 -4.0 -18.4 glutamate synthase compare
RR42_RS25930 -4.0 -5.4 glycine dehydrogenase (deaminating) (EC 1.4.1.10) (from data) compare
RR42_RS04470 -3.9 -6.9 prephenate dehydrogenase compare
RR42_RS14320 -3.9 -5.4 O-succinylhomoserine sulfhydrylase compare
RR42_RS01290 -3.8 -8.1 thiamine biosynthesis protein ThiC compare
RR42_RS33260 -3.8 -9.8 multidrug MFS transporter compare
RR42_RS18300 -3.7 -3.8 anthranilate synthase subunit II compare
RR42_RS33355 -3.6 -5.3 membrane protein compare
RR42_RS18985 -3.6 -7.9 glutamate synthase compare
RR42_RS33250 -3.5 -9.4 tyrosine protein kinase compare
RR42_RS07555 -3.4 -3.9 potassium transporter Kup compare
RR42_RS04535 -3.3 -4.2 cysteine synthase compare
RR42_RS01845 -3.3 -1.9 glycerol-3-phosphate dehydrogenase compare
RR42_RS33240 -3.2 -17.5 GDP-L-fucose synthase compare
RR42_RS07605 -3.2 -7.2 poly-beta-hydroxybutyrate polymerase compare
RR42_RS02705 -3.2 -3.0 Holliday junction DNA helicase RuvA compare
RR42_RS12980 -3.2 -5.5 chemotaxis protein CheY compare
RR42_RS04460 -3.2 -5.5 chorismate mutase compare
RR42_RS17645 -3.2 -6.2 shikimate dehydrogenase compare
RR42_RS14360 -3.1 -1.7 tryptophan synthase subunit alpha compare
RR42_RS03080 -3.0 -3.1 recombinase RecA compare
RR42_RS18995 -3.0 -8.2 transposase compare
RR42_RS33245 -3.0 -8.4 mannose-1-phosphate guanyltransferase compare
RR42_RS12040 -2.9 -11.4 MFS transporter compare
RR42_RS30640 -2.9 -8.9 DNA mismatch repair protein MutT compare
RR42_RS16240 -2.6 -1.4 cobalamin biosynthesis protein CbiX compare
RR42_RS33235 -2.6 -9.8 GDP-mannose 4,6-dehydratase compare
RR42_RS21220 -2.5 -2.9 iron transporter FeoB compare
RR42_RS12985 -2.4 -6.6 histidine kinase compare
RR42_RS25785 -2.4 -2.7 TetR family transcriptional regulator compare
RR42_RS15415 -2.3 -3.5 membrane protein compare
RR42_RS01775 -2.3 -6.1 glutamate--cysteine ligase compare
RR42_RS01920 -2.3 -3.6 protoheme IX farnesyltransferase compare
RR42_RS18855 -2.2 -4.2 preprotein translocase compare
RR42_RS13905 -2.2 -3.3 fumarate hydratase compare
RR42_RS05955 -2.2 -1.7 hypothetical protein compare
RR42_RS17060 -2.1 -12.8 histidine kinase compare
RR42_RS17050 -2.1 -5.5 phosphoribosylglycinamide formyltransferase compare
RR42_RS33210 -2.1 -4.2 teichoic acid biosynthesis protein compare
RR42_RS15890 -2.0 -6.4 heme biosynthesis protein HemY compare
RR42_RS15895 -2.0 -6.6 uroporphyrinogen III methyltransferase compare
RR42_RS07615 -1.9 -3.2 3-ketoacyl-ACP reductase compare
RR42_RS00940 -1.9 -8.5 biotin synthase compare
RR42_RS28300 -1.8 -6.8 L-threonine 3-dehydrogenase (EC 1.1.1.103) (from data) compare
RR42_RS06630 -1.8 -2.7 integration host factor subunit alpha compare
RR42_RS12015 -1.8 -2.6 dihydrolipoamide acyltransferase compare
RR42_RS04895 -1.8 -7.9 serine/threonine protein phosphatase compare
RR42_RS02045 -1.8 -9.3 GTPase compare
RR42_RS17390 -1.8 -7.7 ATP-dependent DNA helicase RecG compare
RR42_RS08575 -1.7 -1.5 tail protein compare
RR42_RS26900 -1.7 -2.7 enoyl-CoA hydratase compare
RR42_RS12550 -1.7 -4.1 hypothetical protein compare
RR42_RS17720 -1.7 -2.9 sugar kinase compare
RR42_RS07380 -1.7 -4.1 dihydrolipoamide dehydrogenase compare
RR42_RS17105 -1.7 -8.8 Clp protease ClpX compare
RR42_RS28295 -1.7 -7.4 2-amino-3-ketobutyrate coenzyme A ligase (EC 2.3.1.29) (from data) compare
RR42_RS00115 -1.7 -1.6 hypothetical protein compare
RR42_RS18310 -1.7 -1.3 indole-3-glycerol-phosphate synthase compare
RR42_RS33215 -1.7 -9.0 transferase compare
RR42_RS06095 -1.6 -4.5 hypothetical protein compare
RR42_RS11790 -1.6 -6.5 phosphoenolpyruvate synthase compare
RR42_RS08945 -1.6 -1.8 hypothetical protein compare
RR42_RS06585 -1.6 -10.8 GTP pyrophosphokinase compare
RR42_RS01380 -1.6 -1.9 membrane protein compare
RR42_RS16260 -1.6 -0.9 phosphoadenosine phosphosulfate reductase compare
RR42_RS05420 -1.5 -6.4 membrane protein compare
RR42_RS14055 -1.5 -3.1 elongation factor 4 compare
RR42_RS18850 -1.5 -2.1 preprotein translocase subunit TatC compare
RR42_RS18270 -1.5 -4.3 murein transglycosylase compare
RR42_RS04770 -1.5 -1.5 methylglyoxal synthase compare
RR42_RS35875 -1.5 -8.2 UDP-galactose-4-epimerase compare
RR42_RS20205 -1.4 -2.8 chromosome partitioning protein compare
RR42_RS14790 -1.4 -5.8 cobalamin biosynthesis protein CobD compare
RR42_RS36105 -1.4 -2.9 MarR family transcriptional regulator compare
RR42_RS02250 -1.4 -3.5 GntR family transcriptional regulator compare
RR42_RS36130 -1.4 -6.8 phytanoyl-CoA dioxygenase compare
RR42_RS11795 -1.3 -1.6 PEP synthetase regulatory protein compare
RR42_RS01795 -1.3 -9.0 phosphoenolpyruvate-protein phosphotransferase compare
RR42_RS04700 -1.3 -1.3 ribonuclease G compare
RR42_RS17055 -1.3 -4.3 LuxR family transcriptional regulator compare
RR42_RS07565 -1.3 -6.0 transcription accessory protein compare
RR42_RS26935 -1.3 -4.7 farnesyl-diphosphate farnesyltransferase compare
RR42_RS08175 -1.3 -1.2 hypothetical protein compare
RR42_RS30320 -1.3 -2.3 hypothetical protein compare
RR42_RS02500 -1.2 -1.1 TetR family transcriptional regulator compare
RR42_RS37400 -1.2 -1.2 6-phosphogluconolactonase compare
RR42_RS12615 -1.2 -2.2 LexA family transcriptional regulator compare
RR42_RS02380 -1.2 -4.9 FAD-linked oxidase compare
RR42_RS21125 -1.2 -2.2 membrane protein compare
RR42_RS15740 -1.2 -2.3 hypothetical protein compare
RR42_RS15475 -1.2 -5.2 protein tolQ compare
RR42_RS19895 -1.2 -1.5 elongation factor GreAB compare
RR42_RS07365 -1.2 -1.9 pyruvate dehydrogenase compare
RR42_RS20195 -1.2 -1.1 ATPase F0F1 compare
RR42_RS13830 -1.2 -1.2 hypothetical protein compare
RR42_RS30545 -1.1 -2.0 cobalt-precorrin-6Y C(5)-methyltransferase compare
RR42_RS12175 -1.1 -6.8 malate synthase compare
RR42_RS18930 -1.1 -3.0 BolA family transcriptional regulator compare
RR42_RS11885 -1.1 -6.4 (protein-PII) uridylyltransferase compare
RR42_RS08425 -1.1 -1.5 hypothetical protein compare
RR42_RS00760 -1.1 -2.5 hypothetical protein compare
RR42_RS31530 -1.1 -1.5 histidine kinase compare
RR42_RS12580 -1.1 -1.3 phosphate transport regulator compare
RR42_RS13040 -1.1 -4.7 iron transporter compare
RR42_RS15090 -1.1 -2.8 DNA helicase compare
RR42_RS12185 -1.1 -1.3 LysR family transcriptional regulator compare
RR42_RS17555 -1.0 -1.1 hypothetical protein compare
RR42_RS10920 -1.0 -1.5 hypothetical protein compare
RR42_RS10365 -1.0 -2.5 ABC transporter compare
RR42_RS12180 -1.0 -4.7 haloacid dehalogenase compare
RR42_RS35290 -1.0 -2.6 Fe-S oxidoreductase compare
RR42_RS15000 -1.0 -1.9 GTP cyclohydrolase compare
RR42_RS15410 -1.0 -4.0 membrane protein compare
RR42_RS12590 -1.0 -0.9 50S ribosomal protein L9 compare
RR42_RS17565 -1.0 -6.5 LysR family transcriptional regulator compare
RR42_RS24605 -1.0 -5.2 TetR family transcriptional regulator compare
RR42_RS18825 -1.0 -2.3 ubiquinol-cytochrome C reductase compare
RR42_RS32600 -1.0 -2.4 cytochrome O ubiquinol oxidase subunit II compare
RR42_RS00235 -1.0 -2.9 membrane protein compare
RR42_RS12990 -1.0 -2.2 hypothetical protein compare
RR42_RS21435 -1.0 -2.6 hypothetical protein compare
RR42_RS08525 -1.0 -2.2 hypothetical protein compare
RR42_RS06580 -1.0 -2.7 aminoacrylate peracid reductase compare
RR42_RS26370 -1.0 -1.7 tautomerase compare
RR42_RS02420 -0.9 -0.9 SAM-dependent methyltransferase compare
RR42_RS15035 -0.9 -3.4 ZIP zinc transporter compare
RR42_RS24930 -0.9 -0.8 AraC family transcriptional regulator compare
RR42_RS29785 -0.9 -2.8 hypothetical protein compare
RR42_RS00230 -0.9 -4.3 ADP-ribosylglycohydrolase compare
RR42_RS28720 -0.9 -2.1 hypothetical protein compare
RR42_RS27160 -0.9 -2.4 acetyl-CoA acetyltransferase compare
RR42_RS14030 -0.9 -2.3 DNA recombination protein RecO compare
RR42_RS27570 -0.9 -2.4 murein hydrolase effector protein compare
RR42_RS04320 -0.9 -3.6 cell division protein FtsK compare
RR42_RS12545 -0.9 -4.4 aminotransferase compare
RR42_RS16675 -0.9 -0.7 hypothetical protein compare
RR42_RS20210 -0.9 -3.3 16S rRNA methyltransferase compare
RR42_RS26455 -0.9 -1.0 amino acid ABC transporter ATP-binding protein compare
RR42_RS36335 -0.9 -1.7 enoyl-CoA hydratase compare
RR42_RS09015 -0.9 -2.2 trigger factor compare
RR42_RS22345 -0.9 -2.9 UDP-N-acetylmuramate--alanine ligase compare
RR42_RS35240 -0.9 -1.6 acyl-CoA dehydrogenase compare
RR42_RS02730 -0.9 -2.9 tRNA-dihydrouridine synthase B compare
RR42_RS07225 -0.9 -1.1 hypothetical protein compare
RR42_RS12925 -0.9 -1.4 ATPase compare
RR42_RS27065 -0.9 -1.2 hypothetical protein compare
RR42_RS00420 -0.9 -3.6 hypothetical protein compare
RR42_RS02150 -0.9 -1.8 membrane protein compare
RR42_RS04245 -0.9 -2.0 chemotaxis protein CheY compare
RR42_RS16430 -0.9 -2.6 transposase compare
RR42_RS11785 -0.9 -1.4 NfeD-like family protein 1 compare
RR42_RS31285 -0.9 -1.5 XRE family transcriptional regulator compare
RR42_RS00925 -0.9 -4.6 adenosylmethionine--8-amino-7-oxononanoate aminotransferase BioA compare
RR42_RS12305 -0.9 -1.0 hypothetical protein compare
RR42_RS03630 -0.9 -1.0 cold-shock protein compare
RR42_RS21665 -0.9 -4.5 cobalt transporter compare
RR42_RS08330 -0.9 -1.0 hypothetical protein compare
RR42_RS22535 -0.8 -2.1 ArsR family transcriptional regulator compare
RR42_RS37045 -0.8 -0.7 thiamine biosynthesis protein ApbE compare
RR42_RS00715 -0.8 -1.5 ferritin compare
RR42_RS03170 -0.8 -3.2 hypothetical protein compare
RR42_RS18725 -0.8 -1.0 hypothetical protein compare
RR42_RS34115 -0.8 -2.8 hypothetical protein compare
RR42_RS32595 -0.8 -2.9 cytochrome o ubiquinol oxidase subunit I compare
RR42_RS02085 -0.8 -3.0 RNA polymerase subunit sigma-54 compare
RR42_RS06015 -0.8 -5.6 recombinase compare
RR42_RS11530 -0.8 -0.8 LuxR family transcriptional regulator compare
RR42_RS02030 -0.8 -2.0 membrane protein compare
RR42_RS23845 -0.8 -1.6 hypothetical protein compare
RR42_RS36120 -0.8 -3.5 LysR family transcriptional regulator compare
RR42_RS18120 -0.8 -1.3 cell division protein MraZ compare
RR42_RS16510 -0.8 -1.6 hypothetical protein compare
RR42_RS28885 -0.8 -2.9 membrane protein compare
RR42_RS15785 -0.8 -4.8 glycosyl transferase family 28 compare


Specific Phenotypes

For 3 genes in this experiment

For nitrogen source L-Threonine in Cupriavidus basilensis FW507-4G11

For nitrogen source L-Threonine across organisms