Experiment set2IT086 for Burkholderia phytofirmans PsJN

Compare to:

inner cut, LB soft agar motility assay

200 most important genes:

  gene name fitness t score description  
BPHYT_RS15075 -5.9 -2.9 dihydrokaempferol 4-reductase compare
BPHYT_RS16710 -5.6 -1.6 LysR family transcriptional regulator compare
BPHYT_RS14855 -5.6 -2.7 ADP-L-glycero-D-manno-heptose-6-epimerase compare
BPHYT_RS04290 -4.9 -2.8 glycosyl transferase family 2 compare
BPHYT_RS02865 -4.8 -3.3 hypothetical protein compare
BPHYT_RS16675 -4.7 -2.9 dihydroorotase compare
BPHYT_RS14865 -4.5 -3.8 UDP-glucose 6-dehydrogenase compare
BPHYT_RS12615 -4.4 -1.7 dihydrodipicolinate synthase compare
BPHYT_RS16175 -4.3 -3.7 hemolysin D compare
BPHYT_RS09515 -4.3 -5.8 phosphoribosylformylglycinamidine synthase compare
BPHYT_RS19085 -4.2 -8.3 flagellin compare
BPHYT_RS18865 -4.2 -5.4 flagellar L-ring protein FlgH compare
BPHYT_RS08850 -4.2 -3.0 transcriptional regulator compare
BPHYT_RS18945 -4.0 -7.4 flagellar biosynthesis protein FlhB compare
BPHYT_RS18910 -3.9 -2.4 FlgN compare
BPHYT_RS14400 -3.9 -3.8 anti-sigma factor compare
BPHYT_RS06410 -3.8 -3.3 transcriptional regulator compare
BPHYT_RS06530 -3.8 -1.4 membrane protein compare
BPHYT_RS16255 -3.6 -6.0 phosphoribosylaminoimidazole-succinocarboxamide synthase compare
BPHYT_RS18845 -3.5 -13.1 flagellar hook-associated protein FlgK conserved
BPHYT_RS18970 -3.5 -15.5 chemotaxis protein compare
BPHYT_RS06175 -3.5 -5.6 LPS biosynthesis compare
BPHYT_RS16840 -3.5 -3.3 transketolase compare
BPHYT_RS18870 -3.5 -9.1 flagellar basal body rod protein FlgG compare
BPHYT_RS18890 -3.4 -3.8 flagellar basal body rod protein FlgC compare
BPHYT_RS33515 -3.4 -10.7 porin compare
BPHYT_RS23840 -3.3 -3.8 methyltransferase compare
BPHYT_RS01795 -3.3 -6.7 histidine kinase compare
BPHYT_RS18795 -3.3 -4.6 flagellar export protein FliJ compare
BPHYT_RS04370 -3.2 -2.2 glycosyl transferase compare
BPHYT_RS18925 -3.2 -10.5 RNA polymerase sigma70 compare
BPHYT_RS18840 -3.2 -8.7 flagellar hook-associated protein FlgL compare
BPHYT_RS18935 -3.2 -8.8 flagellar biosynthesis regulator FlhF compare
BPHYT_RS18895 -3.2 -6.8 flagellar basal body rod protein FlgB compare
BPHYT_RS01790 -3.1 -15.4 LuxR family transcriptional regulator compare
BPHYT_RS16245 -3.1 -5.5 phosphoribosylaminoimidazole carboxylase compare
BPHYT_RS18790 -3.1 -9.6 ATP synthase compare
BPHYT_RS19010 -3.1 -6.7 flagellar motor protein MotB conserved
BPHYT_RS33920 -3.0 -8.4 type II citrate synthase compare
BPHYT_RS18900 -3.0 -9.9 flagella basal body P-ring formation protein FlgA compare
BPHYT_RS01485 -3.0 -1.2 histidine kinase compare
BPHYT_RS18940 -3.0 -8.0 flagellar biosynthesis protein FlhA compare
BPHYT_RS18775 -2.9 -10.5 flagellar M-ring protein FliF compare
BPHYT_RS12465 -2.9 -4.5 inositol monophosphatase compare
BPHYT_RS18765 -2.9 -7.0 flagellar biosynthesis protein FliS compare
BPHYT_RS03640 -2.8 -4.3 phosphoribosylformylglycinamidine cyclo-ligase compare
BPHYT_RS03725 -2.8 -2.2 serine hydroxymethyltransferase compare
BPHYT_RS14395 -2.8 -8.6 sugar dehydratase compare
BPHYT_RS01625 -2.8 -4.7 chemotaxis protein CheY compare
BPHYT_RS18825 -2.7 -4.8 flagellar biosynthesis protein FliP compare
BPHYT_RS06990 -2.7 -1.8 membrane protein compare
BPHYT_RS17520 -2.7 -5.9 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase compare
BPHYT_RS33765 -2.7 -1.5 membrane protein compare
BPHYT_RS30040 -2.6 -1.6 hypothetical protein compare
BPHYT_RS16215 -2.6 -6.8 sensor histidine kinase compare
BPHYT_RS18830 -2.6 -7.9 flagellar biosynthesis protein FliQ compare
BPHYT_RS18800 -2.5 -5.3 flagellar hook-length control protein compare
BPHYT_RS15710 -2.5 -2.1 ATP-dependent Clp protease ATP-binding protein compare
BPHYT_RS19015 -2.5 -8.4 flagellar motor protein MotA conserved
BPHYT_RS02965 -2.4 -2.7 membrane protein compare
BPHYT_RS34780 -2.4 -3.8 phytoene synthase compare
BPHYT_RS19125 -2.4 -4.7 short-chain dehydrogenase compare
BPHYT_RS18880 -2.4 -8.1 flagellar hook protein FlgE compare
BPHYT_RS16270 -2.3 -3.9 phosphoglycerate kinase compare
BPHYT_RS01455 -2.3 -1.1 peptide deformylase compare
BPHYT_RS18875 -2.3 -2.9 flagellar basal body rod protein FlgF compare
BPHYT_RS18810 -2.3 -4.9 flagellar motor switch protein FliM compare
BPHYT_RS16345 -2.2 -5.2 succinyl-CoA ligase [ADP-forming] subunit beta compare
BPHYT_RS19120 -2.2 -6.9 3-oxoacyl-ACP synthase compare
BPHYT_RS09315 -2.2 -1.2 chemotaxis protein CheY compare
BPHYT_RS16835 -2.2 -4.9 glyceraldehyde-3-phosphate dehydrogenase compare
BPHYT_RS19100 -2.1 -10.6 hypothetical protein compare
BPHYT_RS23270 -2.1 -1.8 enoyl-CoA hydratase compare
BPHYT_RS34815 -2.1 -2.5 ABC transporter compare
BPHYT_RS18965 -2.1 -1.8 chemotaxis protein CheY compare
BPHYT_RS04285 -2.1 -2.0 rhamnosyltransferase compare
BPHYT_RS09500 -2.1 -6.0 glucose-6-phosphate isomerase compare
BPHYT_RS18995 -2.0 -5.1 purine-binding chemotaxis protein compare
BPHYT_RS13245 -2.0 -5.8 hypothetical protein compare
BPHYT_RS18885 -2.0 -3.1 flagellar basal body rod modification protein FlgD compare
BPHYT_RS18855 -2.0 -3.8 flagellar rod assembly protein FlgJ compare
BPHYT_RS02860 -2.0 -1.3 membrane protein compare
BPHYT_RS20060 -1.9 -1.6 hypothetical protein compare
BPHYT_RS34360 -1.9 -6.0 methyl-accepting chemotaxis protein conserved
BPHYT_RS19105 -1.9 -7.7 aminotransferase compare
BPHYT_RS03655 -1.9 -1.2 membrane protein compare
BPHYT_RS20440 -1.9 -1.6 IclR family transcriptional regulator compare
BPHYT_RS16340 -1.9 -6.3 succinyl-CoA synthetase subunit alpha compare
BPHYT_RS06405 -1.9 -7.0 phosphoribosylamine--glycine ligase compare
BPHYT_RS08150 -1.9 -1.1 membrane protein compare
BPHYT_RS02590 -1.9 -7.0 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase compare
BPHYT_RS19000 -1.8 -8.3 chemotaxis protein CheA compare
BPHYT_RS06610 -1.8 -2.1 triosephosphate isomerase compare
BPHYT_RS22360 -1.8 -3.5 response regulator receiver compare
BPHYT_RS06325 -1.8 -3.5 ATPase compare
BPHYT_RS33535 -1.8 -13.0 RNA polymerase sigma factor RpoD compare
BPHYT_RS19130 -1.8 -3.5 acetyltransferase compare
BPHYT_RS06190 -1.8 -3.0 heptosyltransferase compare
BPHYT_RS33890 -1.8 -7.8 fimbrial protein FimV compare
BPHYT_RS18785 -1.8 -1.7 flagellar assembly protein FliH compare
BPHYT_RS11705 -1.7 -1.3 hypothetical protein compare
BPHYT_RS15620 -1.7 -4.1 peptidyl-prolyl cis-trans isomerase compare
BPHYT_RS02285 -1.7 -4.3 cell division protein compare
BPHYT_RS08565 -1.7 -1.8 dihydroorotate dehydrogenase compare
BPHYT_RS17165 -1.7 -3.4 cell division protein ZapD compare
BPHYT_RS08960 -1.7 -1.6 threonine synthase compare
BPHYT_RS10095 -1.7 -2.3 integrase compare
BPHYT_RS18610 -1.7 -6.4 lytic transglycosylase compare
BPHYT_RS15615 -1.7 -3.6 4-hydroxy-3-methylbut-2-enyl diphosphate reductase compare
BPHYT_RS18805 -1.6 -3.0 flagellar basal body protein FliL compare
BPHYT_RS19025 -1.6 -3.3 transcriptional regulator compare
BPHYT_RS33460 -1.6 -1.0 protocatechuate 3,4-dioxygenase subunit alpha compare
BPHYT_RS05320 -1.6 -1.8 beta-lactamase compare
BPHYT_RS06375 -1.6 -4.7 ribonuclease compare
BPHYT_RS02525 -1.6 -8.0 membrane protein compare
BPHYT_RS01530 -1.6 -1.9 penicillin-binding protein 2 compare
BPHYT_RS17920 -1.6 -1.4 protein CyaY compare
BPHYT_RS12845 -1.6 -10.7 ATPase compare
BPHYT_RS16210 -1.6 -2.4 peptidase compare
BPHYT_RS02130 -1.5 -3.6 hydroxymethylglutaryl-CoA lyase compare
BPHYT_RS35835 -1.5 -4.0 hypothetical protein compare
BPHYT_RS34805 -1.5 -4.9 ABC transporter compare
BPHYT_RS17095 -1.5 -3.2 proline--tRNA ligase compare
BPHYT_RS01620 -1.5 -7.1 sensor histidine kinase compare
BPHYT_RS17530 -1.5 -4.6 3-octaprenyl-4-hydroxybenzoate carboxy-lyase compare
BPHYT_RS25870 -1.5 -1.0 type III secretion system ATPase compare
BPHYT_RS29320 -1.5 -1.6 histidine kinase compare
BPHYT_RS04385 -1.5 -2.2 nucleoside-diphosphate sugar oxidoreductase compare
BPHYT_RS21905 -1.5 -1.2 IclR family transcriptional regulator compare
BPHYT_RS18415 -1.5 -2.0 hypothetical protein compare
BPHYT_RS05615 -1.5 -1.4 hypothetical protein compare
BPHYT_RS18930 -1.5 -3.2 flagellar biosynthesis protein FlhG compare
BPHYT_RS28705 -1.5 -1.4 IclR family transcriptional regulator compare
BPHYT_RS30750 -1.5 -1.6 GntR family transcriptional regulator compare
BPHYT_RS20940 -1.5 -2.0 citrate synthase compare
BPHYT_RS24500 -1.5 -1.8 histidine kinase compare
BPHYT_RS30485 -1.5 -1.2 ABC transporter ATP-binding protein compare
BPHYT_RS11535 -1.5 -4.0 membrane protein compare
BPHYT_RS26025 -1.5 -0.9 hypothetical protein compare
BPHYT_RS06320 -1.5 -2.3 chemotaxis protein CheY compare
BPHYT_RS14735 -1.5 -1.1 hypothetical protein compare
BPHYT_RS17900 -1.5 -3.1 hypothetical protein compare
BPHYT_RS20235 -1.4 -4.1 iron ABC transporter compare
BPHYT_RS04455 -1.4 -1.2 glycosyl transferase compare
BPHYT_RS26310 -1.4 -2.4 ribonuclease R compare
BPHYT_RS34810 -1.4 -4.1 RND transporter compare
BPHYT_RS35770 -1.4 -1.2 glyoxalase compare
BPHYT_RS29110 -1.4 -3.4 DNA-directed DNA polymerase compare
BPHYT_RS14250 -1.4 -6.6 glycosyl transferase compare
BPHYT_RS01435 -1.4 -12.2 LysR family transcriptional regulator compare
BPHYT_RS18780 -1.4 -2.9 flagellar motor switch protein FliG compare
BPHYT_RS14670 -1.4 -1.2 hypothetical protein compare
BPHYT_RS15415 -1.4 -8.7 3-octaprenyl-4-hydroxybenzoate carboxy-lyase compare
BPHYT_RS12990 -1.4 -1.8 iron transporter compare
BPHYT_RS23760 -1.4 -2.5 phosphonate ABC transporter permease compare
BPHYT_RS24565 -1.3 -3.0 membrane protein compare
BPHYT_RS20790 -1.3 -1.8 TetR family transcriptional regulator compare
BPHYT_RS19115 -1.3 -1.9 acyl carrier protein compare
BPHYT_RS19305 -1.3 -5.4 ATP-dependent DNA helicase Rep compare
BPHYT_RS33610 -1.3 -1.7 DNA polymerase I compare
BPHYT_RS06685 -1.3 -1.8 NADH:ubiquinone oxidoreductase subunit M compare
BPHYT_RS18860 -1.3 -2.1 flagellar P-ring protein FlgI compare
BPHYT_RS21940 -1.3 -3.0 hemolysin D compare
BPHYT_RS01425 -1.2 -3.6 3-phosphoglycerate dehydrogenase compare
BPHYT_RS18980 -1.2 -5.0 chemotaxis protein CheR compare
BPHYT_RS22560 -1.2 -3.0 flagellar transcriptional regulator FlhD compare
BPHYT_RS21335 -1.2 -1.8 CDP-alcohol phosphatidyltransferase compare
BPHYT_RS05650 -1.2 -0.8 hypothetical protein compare
BPHYT_RS17035 -1.2 -2.7 sugar kinase compare
BPHYT_RS36005 -1.2 -3.4 hypothetical protein compare
BPHYT_RS17860 -1.2 -3.0 transposase compare
BPHYT_RS17830 -1.2 -2.2 histidine kinase compare
BPHYT_RS17100 -1.2 -4.3 RNA pyrophosphohydrolase compare
BPHYT_RS06900 -1.2 -4.4 aspartate aminotransferase compare
BPHYT_RS05335 -1.2 -1.9 AraC family transcriptional regulator compare
BPHYT_RS10270 -1.2 -3.2 D-amino acid dehydrogenase compare
BPHYT_RS17890 -1.2 -1.7 shikimate kinase compare
BPHYT_RS17445 -1.2 -3.0 GTP-binding protein YchF compare
BPHYT_RS16880 -1.2 -0.9 malic enzyme compare
BPHYT_RS07760 -1.2 -1.3 diguanylate phosphodiesterase compare
BPHYT_RS02415 -1.2 -5.1 cytochrome C550 compare
BPHYT_RS23275 -1.2 -2.6 3-methylcrotonyl-CoA carboxylase subunit alpha compare
BPHYT_RS36355 -1.2 -1.8 hypothetical protein compare
BPHYT_RS13200 -1.2 -1.6 molybdopterin binding oxidoreductase compare
BPHYT_RS22265 -1.2 -1.3 hypothetical protein compare
BPHYT_RS03645 -1.2 -1.7 tRNA dimethylallyltransferase compare
BPHYT_RS17885 -1.2 -4.0 3-dehydroquinate synthase compare
BPHYT_RS14255 -1.1 -7.4 ABC transporter compare
BPHYT_RS01975 -1.1 -1.6 hypothetical protein compare
BPHYT_RS34530 -1.1 -1.1 LysR family transcriptional regulator compare
BPHYT_RS23430 -1.1 -2.1 bifunctional D-altronate/D-mannonate dehydratase compare
BPHYT_RS22030 -1.1 -1.8 peptide ABC transporter ATP-binding protein compare
BPHYT_RS09620 -1.1 -2.5 aminodeoxychorismate lyase compare
BPHYT_RS02180 -1.1 -1.5 hypothetical protein compare
BPHYT_RS05235 -1.1 -1.0 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase compare
BPHYT_RS30085 -1.1 -1.0 hypothetical protein compare
BPHYT_RS16350 -1.1 -2.2 hypothetical protein compare
BPHYT_RS12510 -1.1 -1.5 RNA-binding protein compare
BPHYT_RS28880 -1.1 -1.9 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase compare
BPHYT_RS10345 -1.1 -0.9 flagellar motor protein MotB compare


Specific Phenotypes

For 8 genes in this experiment

For motility Agar in Burkholderia phytofirmans PsJN

For motility Agar across organisms