Experiment set2IT086 for Burkholderia phytofirmans PsJN

Compare to:

inner cut, LB soft agar motility assay

200 most detrimental genes:

  gene name fitness t score description  
BPHYT_RS06105 +2.1 2.7 hypothetical protein compare
BPHYT_RS16090 +1.9 2.4 hypothetical protein compare
BPHYT_RS32210 +1.8 1.1 hypothetical protein compare
BPHYT_RS13320 +1.8 2.3 allantoate amidohydrolase compare
BPHYT_RS30465 +1.5 2.0 short-chain dehydrogenase compare
BPHYT_RS28255 +1.4 2.6 hypothetical protein compare
BPHYT_RS29520 +1.3 1.6 hypothetical protein compare
BPHYT_RS29260 +1.3 4.6 esterase compare
BPHYT_RS28860 +1.3 1.7 haloacid dehalogenase compare
BPHYT_RS10040 +1.3 1.5 hypothetical protein compare
BPHYT_RS26870 +1.3 5.4 cytochrome C551 compare
BPHYT_RS28575 +1.3 1.5 transcriptional regulator compare
BPHYT_RS19325 +1.2 2.8 glycine cleavage system H protein compare
BPHYT_RS28690 +1.2 2.0 diguanylate phosphodiesterase compare
BPHYT_RS32690 +1.1 1.6 acyl-CoA dehydrogenase compare
BPHYT_RS27370 +1.1 1.3 CoA transferase compare
BPHYT_RS10240 +1.1 1.3 translation initiation inhibitor compare
BPHYT_RS14740 +1.1 5.4 threonine-phosphate decarboxylase compare
BPHYT_RS26815 +1.1 2.6 1-aminocyclopropane-1-carboxylate deaminase compare
BPHYT_RS20630 +1.1 1.5 patatin compare
BPHYT_RS13555 +1.1 1.9 acyl-CoA dehydrogenase compare
BPHYT_RS08600 +1.1 1.9 hypothetical protein compare
BPHYT_RS17490 +1.1 2.2 haloacid dehalogenase compare
BPHYT_RS36540 +1.1 2.8 hypothetical protein compare
BPHYT_RS16335 +1.1 1.3 membrane protein compare
BPHYT_RS29820 +1.0 1.7 hypothetical protein compare
BPHYT_RS09765 +1.0 2.8 G-D-S-L family lipolytic protein compare
BPHYT_RS28215 +1.0 3.8 D-ribose transporter ATP binding protein compare
BPHYT_RS03925 +1.0 2.2 LysR family transcriptional regulator compare
BPHYT_RS30265 +1.0 1.2 hypothetical protein compare
BPHYT_RS23615 +1.0 1.6 XRE family transcriptional regulator compare
BPHYT_RS30500 +1.0 1.8 ABC transporter permease compare
BPHYT_RS30425 +0.9 1.5 LysR family transcriptional regulator compare
BPHYT_RS26525 +0.9 1.4 amino acid ABC transporter substrate-binding protein compare
BPHYT_RS12520 +0.9 2.7 nicotinate phosphoribosyltransferase compare
BPHYT_RS11455 +0.9 1.6 manganese transporter compare
BPHYT_RS27485 +0.9 1.8 NAD-dependent dehydratase compare
BPHYT_RS36400 +0.9 1.5 hypothetical protein compare
BPHYT_RS11265 +0.9 1.7 hypothetical protein compare
BPHYT_RS12050 +0.9 1.8 hypothetical protein compare
BPHYT_RS22875 +0.9 4.5 hypothetical protein compare
BPHYT_RS09385 +0.9 1.1 FAD-dependent oxidoreductase compare
BPHYT_RS25470 +0.9 1.3 alkylhydroperoxidase compare
BPHYT_RS15320 +0.9 1.7 hypothetical protein compare
BPHYT_RS28635 +0.9 1.3 hypothetical protein compare
BPHYT_RS16490 +0.9 4.2 glycerol-3-phosphate dehydrogenase compare
BPHYT_RS16065 +0.9 0.7 LacI family transcriptional regulator compare
BPHYT_RS31430 +0.9 2.8 FAD-dependent oxidoreductase compare
BPHYT_RS02880 +0.9 0.9 ATP-dependent protease compare
BPHYT_RS06080 +0.9 2.2 endonuclease IV compare
BPHYT_RS14790 +0.9 2.7 D-amino acid dehydrogenase compare
BPHYT_RS21235 +0.9 1.7 hypothetical protein compare
BPHYT_RS19895 +0.9 1.8 rod shape-determining protein RodA compare
BPHYT_RS00140 +0.9 3.4 MerR family transcriptional regulator compare
BPHYT_RS01985 +0.9 1.5 hypothetical protein compare
BPHYT_RS06455 +0.9 1.7 potassium-transporting ATPase C chain compare
BPHYT_RS26825 +0.9 1.2 quercetin 2,3-dioxygenase compare
BPHYT_RS06470 +0.9 0.8 membrane protein compare
BPHYT_RS07040 +0.9 2.1 asparaginase compare
BPHYT_RS21925 +0.9 2.6 formimidoylglutamase compare
BPHYT_RS10360 +0.8 2.6 MFS transporter compare
BPHYT_RS18420 +0.8 1.9 hypothetical protein compare
BPHYT_RS35230 +0.8 1.3 type 11 methyltransferase compare
BPHYT_RS36245 +0.8 1.5 hypothetical protein compare
BPHYT_RS02540 +0.8 1.3 hypothetical protein compare
BPHYT_RS18750 +0.8 2.2 flagellar biosynthetic protein FlhB compare
BPHYT_RS20775 +0.8 1.8 3-ketoacyl-ACP reductase compare
BPHYT_RS07425 +0.8 1.1 hypothetical protein compare
BPHYT_RS07085 +0.8 1.8 LysR family transcriptional regulator compare
BPHYT_RS03215 +0.8 1.6 TetR family transcriptional regulator compare
BPHYT_RS28900 +0.8 1.2 2-oxo-hepta-3-ene-1,7-dioic acid hydratase compare
BPHYT_RS31685 +0.8 1.8 D-isomer specific 2-hydroxyacid dehydrogenase compare
BPHYT_RS26575 +0.8 1.0 hypothetical protein compare
BPHYT_RS36250 +0.8 2.4 hypothetical protein compare
BPHYT_RS31890 +0.8 1.4 transposase compare
BPHYT_RS29330 +0.8 1.6 acetyltransferase compare
BPHYT_RS36320 +0.8 3.0 type IV secretion system family protein compare
BPHYT_RS14785 +0.8 1.9 AsnC family transcriptional regulator compare
BPHYT_RS32345 +0.8 2.5 LrgB family protein compare
BPHYT_RS32930 +0.8 1.5 NADPH:quinone reductase and related Zn-dependent oxidoreductase-like protein compare
BPHYT_RS29300 +0.8 1.9 endoribonuclease L-PSP compare
BPHYT_RS20880 +0.8 0.8 polyketide cyclase compare
BPHYT_RS10750 +0.8 0.9 LysR family transcriptional regulator compare
BPHYT_RS26085 +0.8 3.3 ABC transporter substrate-binding protein compare
BPHYT_RS07175 +0.8 2.0 peptidase C69 compare
BPHYT_RS20715 +0.8 1.3 peptidase compare
BPHYT_RS10135 +0.8 1.0 hypothetical protein compare
BPHYT_RS28985 +0.8 1.6 hypothetical protein compare
BPHYT_RS10115 +0.8 2.0 hypothetical protein compare
BPHYT_RS02035 +0.8 0.8 hypothetical protein compare
BPHYT_RS10430 +0.8 2.5 glycosyl transferase family 1 compare
BPHYT_RS23565 +0.8 3.0 ABC transporter compare
BPHYT_RS15285 +0.7 2.4 transcription elongation factor GreB compare
BPHYT_RS08190 +0.7 0.9 type II secretion system protein compare
BPHYT_RS08280 +0.7 2.8 acyl dehydratase compare
BPHYT_RS00750 +0.7 1.7 SpoVT/AbrB domain-containing protein compare
BPHYT_RS36555 +0.7 3.9 hypothetical protein compare
BPHYT_RS35590 +0.7 1.4 tryptophanyl-tRNA synthetase compare
BPHYT_RS15305 +0.7 3.2 guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase compare
BPHYT_RS05085 +0.7 2.0 LysR family transcriptional regulator compare
BPHYT_RS24690 +0.7 4.3 ionic transporter y4hA compare
BPHYT_RS26900 +0.7 2.0 isoprenylcysteine carboxyl methyltransferase compare
BPHYT_RS00380 +0.7 1.8 3-octaprenyl-4-hydroxybenzoate carboxy-lyase compare
BPHYT_RS04115 +0.7 2.6 glycosyhydrolase compare
BPHYT_RS01235 +0.7 0.8 hypothetical protein compare
BPHYT_RS12455 +0.7 3.3 serine O-acetyltransferase compare
BPHYT_RS33820 +0.7 4.2 histidine kinase compare
BPHYT_RS08985 +0.7 2.5 Rrf2 family transcriptional regulator compare
BPHYT_RS32240 +0.7 1.1 chromosome replication initiation inhibitor protein compare
BPHYT_RS15325 +0.7 1.8 ribonuclease PH compare
BPHYT_RS10320 +0.7 1.9 hypothetical protein compare
BPHYT_RS30140 +0.7 1.1 3-methylitaconate isomerase compare
BPHYT_RS20900 +0.7 1.2 phytanoyl-CoA dioxygenase compare
BPHYT_RS30200 +0.7 3.1 FAD-dependent oxidoreductase compare
BPHYT_RS09850 +0.7 1.2 molybdopterin oxidoreductase compare
BPHYT_RS16815 +0.7 1.4 ureidoglycolate hydrolase compare
BPHYT_RS20180 +0.7 0.8 sugar ABC transporter substrate-binding protein compare
BPHYT_RS31630 +0.7 2.2 hypothetical protein compare
BPHYT_RS07435 +0.7 2.3 amino acid transporter compare
BPHYT_RS10425 +0.7 3.1 polysaccharide deacetylase compare
BPHYT_RS34185 +0.7 2.6 cold-shock protein compare
BPHYT_RS11810 +0.7 0.9 LysR family transcriptional regulator compare
BPHYT_RS26970 +0.7 2.9 L-lactate dehydrogenase, LldF subunit (from data) compare
BPHYT_RS02970 +0.7 5.4 excinuclease ABC subunit A compare
BPHYT_RS24210 +0.7 1.3 urea transporter compare
BPHYT_RS31050 +0.7 0.7 epimerase compare
BPHYT_RS10265 +0.7 2.3 aminotransferase compare
BPHYT_RS11275 +0.7 1.7 hypothetical protein compare
BPHYT_RS13310 +0.7 1.5 dihydropyrimidine dehydrogenase subunit B compare
BPHYT_RS17695 +0.7 2.2 membrane protein compare
BPHYT_RS34280 +0.7 1.4 hypothetical protein compare
BPHYT_RS26290 +0.7 1.2 photosystem reaction center subunit H compare
BPHYT_RS22860 +0.7 0.7 chemotaxis protein CheY compare
BPHYT_RS02100 +0.7 0.9 AsnC family transcriptional regulator compare
BPHYT_RS22105 +0.6 2.6 tRNA synthetase compare
BPHYT_RS36185 +0.6 1.0 hypothetical protein compare
BPHYT_RS08410 +0.6 0.6 dehydrogenase compare
BPHYT_RS30075 +0.6 1.9 NADPH:quinone oxidoreductase compare
BPHYT_RS26960 +0.6 1.5 LysR family transcriptional regulator compare
BPHYT_RS15120 +0.6 1.3 hypothetical protein compare
BPHYT_RS25045 +0.6 1.6 LysR family transcriptional regulator compare
BPHYT_RS31110 +0.6 1.5 hypothetical protein compare
BPHYT_RS05800 +0.6 1.7 hypothetical protein compare
BPHYT_RS20840 +0.6 1.2 beta-lactamase compare
BPHYT_RS03405 +0.6 1.6 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
BPHYT_RS11825 +0.6 0.7 cytosine deaminase compare
BPHYT_RS34650 +0.6 2.3 l-threonine 3-dehydrogenase compare
BPHYT_RS28535 +0.6 0.6 response regulator receiver compare
BPHYT_RS20890 +0.6 2.0 transglycosylase compare
BPHYT_RS26490 +0.6 0.8 hypothetical protein compare
BPHYT_RS09980 +0.6 0.9 TetR family transcriptional regulator compare
BPHYT_RS05005 +0.6 1.4 hypothetical protein compare
BPHYT_RS13080 +0.6 0.8 hypothetical protein compare
BPHYT_RS33965 +0.6 1.4 methylcitrate synthase compare
BPHYT_RS26715 +0.6 1.0 GTP-binding protein compare
BPHYT_RS22470 +0.6 0.8 hydrolase compare
BPHYT_RS26930 +0.6 2.7 mechanosensitive ion channel protein compare
BPHYT_RS12920 +0.6 1.5 hypothetical protein compare
BPHYT_RS20795 +0.6 1.8 sorbosone dehydrogenase compare
BPHYT_RS26950 +0.6 3.1 MFS transporter compare
BPHYT_RS02985 +0.6 1.2 MaoC family dehydratase compare
BPHYT_RS11980 +0.6 1.1 LysR family transcriptional regulator compare
BPHYT_RS28270 +0.6 1.6 ABC transporter substrate-binding protein compare
BPHYT_RS17755 +0.6 1.6 ABC transporter substrate-binding protein compare
BPHYT_RS03445 +0.6 2.6 cytochrome B561 compare
BPHYT_RS10440 +0.6 2.3 GntR family transcriptional regulator compare
BPHYT_RS04985 +0.6 1.5 hypothetical protein compare
BPHYT_RS27705 +0.6 3.1 universal stress protein A compare
BPHYT_RS17265 +0.6 0.8 cell division protein compare
BPHYT_RS31505 +0.6 1.8 hypothetical protein compare
BPHYT_RS10435 +0.6 1.6 ThiJ/PfpI domain-containing protein compare
BPHYT_RS18430 +0.6 3.0 hypothetical protein compare
BPHYT_RS34705 +0.6 1.6 ABC transporter substrate-binding protein compare
BPHYT_RS30860 +0.6 0.9 sugar ABC transporter permease compare
BPHYT_RS24305 +0.6 1.0 glutathione S-transferase compare
BPHYT_RS17410 +0.6 1.6 adenylate cyclase compare
BPHYT_RS09810 +0.6 1.1 hypothetical protein compare
BPHYT_RS26925 +0.6 1.2 NIPSNAP family containing protein compare
BPHYT_RS25845 +0.6 0.8 RND transporter MFP subunit compare
BPHYT_RS20290 +0.6 1.6 LysR family transcriptional regulator compare
BPHYT_RS24915 +0.6 3.0 ubiquinol oxidase subunit II compare
BPHYT_RS20155 +0.6 0.6 hypothetical protein compare
BPHYT_RS05575 +0.6 2.0 Fis family transcriptional regulator compare
BPHYT_RS08815 +0.6 2.5 L-asparaginase (EC 3.5.1.1) (from data) compare
BPHYT_RS21695 +0.6 2.4 membrane protein compare
BPHYT_RS29475 +0.6 1.6 carbon-phosphorus lyase complex subunit PhnJ compare
BPHYT_RS28995 +0.6 2.0 histidine kinase compare
BPHYT_RS14620 +0.6 1.5 acyl-CoA hydrolase compare
BPHYT_RS23245 +0.6 1.8 phospho-2-dehydro-3-deoxyheptonate aldolase compare
BPHYT_RS03625 +0.6 2.3 Histidinol-phosphatase (EC:3.1.3.15) (from data) compare
BPHYT_RS05850 +0.6 2.2 hypothetical protein compare
BPHYT_RS28930 +0.6 0.7 chromosome partitioning protein ParA compare
BPHYT_RS32145 +0.6 2.2 type IV secretory pathway protein VirD4 compare
BPHYT_RS21790 +0.6 1.3 hypothetical protein compare
BPHYT_RS20430 +0.6 1.5 3-dehydroquinate dehydratase compare
BPHYT_RS14560 +0.6 2.6 AraC family transcriptional regulator compare
BPHYT_RS10120 +0.6 1.1 membrane protein compare
BPHYT_RS18635 +0.6 1.1 LamB/YcsF family protein compare
BPHYT_RS05385 +0.6 3.0 short-chain dehydrogenase compare
BPHYT_RS21025 +0.6 0.7 cation-binding protein compare


Specific Phenotypes

For 8 genes in this experiment

For motility Agar in Burkholderia phytofirmans PsJN

For motility Agar across organisms